| Back to Build/check report for BioC 3.15 experimental data |
|
This page was generated on 2022-02-17 08:36:54 -0500 (Thu, 17 Feb 2022).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) | x86_64 | R Under development (unstable) (2022-01-05 r81451) -- "Unsuffered Consequences" | 1362 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
|
To the developers/maintainers of the signatureSearchData package: Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 348/406 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | ||||||||
| signatureSearchData 1.9.5 (landing page) Brendan Gongol
| nebbiolo2 | Linux (Ubuntu 20.04.4 LTS) / x86_64 | OK | OK | OK | ||||||||
| Package: signatureSearchData |
| Version: 1.9.5 |
| Command: /home/biocbuild/bbs-3.15-data-experiment/R/bin/R CMD check --install=check:signatureSearchData.install-out.txt --library=/home/biocbuild/bbs-3.15-data-experiment/R/library --no-vignettes --timings signatureSearchData_1.9.5.tar.gz |
| StartedAt: 2022-02-17 07:58:54 -0500 (Thu, 17 Feb 2022) |
| EndedAt: 2022-02-17 08:00:15 -0500 (Thu, 17 Feb 2022) |
| EllapsedTime: 81.2 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: signatureSearchData.Rcheck |
| Warnings: 0 |
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### Running command:
###
### /home/biocbuild/bbs-3.15-data-experiment/R/bin/R CMD check --install=check:signatureSearchData.install-out.txt --library=/home/biocbuild/bbs-3.15-data-experiment/R/library --no-vignettes --timings signatureSearchData_1.9.5.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.15-data-experiment/meat/signatureSearchData.Rcheck’
* using R Under development (unstable) (2022-01-05 r81451)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘signatureSearchData/DESCRIPTION’ ... OK
* this is package ‘signatureSearchData’ version ‘1.9.5’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘signatureSearchData’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... NOTE
Namespaces in Imports field not imported from:
‘ExperimentHub’ ‘rhdf5’
All declared Imports should be used.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
ES_NULL 8.087 0.527 9.034
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 1 NOTE
See
‘/home/biocbuild/bbs-3.15-data-experiment/meat/signatureSearchData.Rcheck/00check.log’
for details.
signatureSearchData.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.15-data-experiment/R/bin/R CMD INSTALL signatureSearchData ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.15-data-experiment/R/library’ * installing *source* package ‘signatureSearchData’ ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (signatureSearchData)
signatureSearchData.Rcheck/signatureSearchData-Ex.timings
| name | user | system | elapsed | |
| ES_NULL | 8.087 | 0.527 | 9.034 | |
| GO_DATA | 2.218 | 0.140 | 2.643 | |
| GO_DATA_drug | 1.352 | 0.052 | 1.689 | |
| cmap | 0.172 | 0.004 | 0.175 | |
| cmap_expr | 0.185 | 0.009 | 0.194 | |
| cmap_rank | 0.190 | 0.008 | 0.198 | |
| combineNormRes | 0.002 | 0.000 | 0.001 | |
| combineResults | 0.001 | 0.000 | 0.001 | |
| dtlink_db_clue_sti | 1.339 | 0.021 | 1.561 | |
| getCmapCEL | 0.001 | 0.000 | 0.001 | |
| goAnno | 0.910 | 0.047 | 1.163 | |
| goAnno_drug | 0.873 | 0.040 | 1.346 | |
| inst_filter | 0.082 | 0.000 | 0.083 | |
| lincs | 0.064 | 0.000 | 0.064 | |
| lincs_expr | 0.094 | 0.000 | 0.094 | |
| meanExpr | 0.052 | 0.000 | 0.052 | |
| normalizeCel | 0 | 0 | 0 | |
| probe2gene | 0.002 | 0.000 | 0.002 | |
| runLimma | 2.970 | 0.208 | 3.178 | |
| sampleList | 2.364 | 0.000 | 2.364 | |
| sig_filter | 0.051 | 0.002 | 0.055 | |
| signatureSearchData | 1.202 | 0.032 | 1.464 | |
| taurefList | 0.847 | 0.032 | 1.183 | |