Multiple platform build/check report for BioC 3.19 - CHECK results for graper on nebbiolo1

Hostname	OS	Arch (*)	R version	Installed pkgs
nebbiolo1	Linux (Ubuntu 22.04.3 LTS)	x86_64	4.4.1 (2024-06-14) -- "Race for Your Life"	4763
palomino7	Windows Server 2022 Datacenter	x64	4.4.1 (2024-06-14 ucrt) -- "Race for Your Life"	4500
merida1	macOS 12.7.5 Monterey	x86_64	4.4.1 (2024-06-14) -- "Race for Your Life"	4530
kjohnson1	macOS 13.6.6 Ventura	arm64	4.4.1 (2024-06-14) -- "Race for Your Life"	4480
Click on any hostname to see more info about the system (e.g. compilers) () as reported by 'uname -p', except on Windows and Mac OS X*

CHECK results for graper on nebbiolo1

To the developers/maintainers of the graper package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/graper.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results

Summary

Package: graper

Version: 1.20.0

Command: /home/biocbuild/bbs-3.19-bioc/R/bin/R CMD check --install=check:graper.install-out.txt --library=/home/biocbuild/bbs-3.19-bioc/R/site-library --timings graper_1.20.0.tar.gz

StartedAt: 2024-10-17 01:07:41 -0400 (Thu, 17 Oct 2024)

EndedAt: 2024-10-17 01:09:03 -0400 (Thu, 17 Oct 2024)

EllapsedTime: 82.2 seconds

RetCode: 0

Status: OK

CheckDir: graper.Rcheck

Warnings: 0

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.19-bioc/R/bin/R CMD check --install=check:graper.install-out.txt --library=/home/biocbuild/bbs-3.19-bioc/R/site-library --timings graper_1.20.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory ‘/home/biocbuild/bbs-3.19-bioc/meat/graper.Rcheck’
* using R version 4.4.1 (2024-06-14)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0
    GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0
* running under: Ubuntu 22.04.5 LTS
* using session charset: UTF-8
* checking for file ‘graper/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘graper’ version ‘1.20.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘graper’ can be installed ... OK
* used C++ compiler: ‘g++ (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’
* checking C++ specification ... NOTE
  Specified C++11: please drop specification unless essential
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... NOTE
checkRd: (-1) predict.graper.Rd:19-21: Lost braces in \itemize; meant \describe ?
checkRd: (-1) predict.graper.Rd:22: Lost braces in \itemize; meant \describe ?
checkRd: (-1) predict.graper.Rd:23-24: Lost braces in \itemize; meant \describe ?
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking compilation flags in Makevars ... OK
* checking for GNU extensions in Makefiles ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking use of PKG_*FLAGS in Makefiles ... OK
* checking compiled code ... NOTE
Note: information on .o files is not available
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘testthat.R’
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... OK
* DONE

Status: 3 NOTEs
See
  ‘/home/biocbuild/bbs-3.19-bioc/meat/graper.Rcheck/00check.log’
for details.

Installation output

graper.Rcheck/00install.out

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.19-bioc/R/bin/R CMD INSTALL graper
###
##############################################################################
##############################################################################


* installing to library ‘/home/biocbuild/bbs-3.19-bioc/R/site-library’
* installing *source* package ‘graper’ ...
** using staged installation
** libs
using C++ compiler: ‘g++ (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0’
using C++11
g++ -std=gnu++11 -I"/home/biocbuild/bbs-3.19-bioc/R/include" -DNDEBUG  -I'/home/biocbuild/bbs-3.19-bioc/R/site-library/Rcpp/include' -I'/home/biocbuild/bbs-3.19-bioc/R/site-library/RcppArmadillo/include' -I'/home/biocbuild/bbs-3.19-bioc/R/site-library/BH/include' -I/usr/local/include    -fpic  -g -O2  -Wall  -c RcppExports.cpp -o RcppExports.o
g++ -std=gnu++11 -I"/home/biocbuild/bbs-3.19-bioc/R/include" -DNDEBUG  -I'/home/biocbuild/bbs-3.19-bioc/R/site-library/Rcpp/include' -I'/home/biocbuild/bbs-3.19-bioc/R/site-library/RcppArmadillo/include' -I'/home/biocbuild/bbs-3.19-bioc/R/site-library/BH/include' -I/usr/local/include    -fpic  -g -O2  -Wall  -c fit_graper.cpp -o fit_graper.o
In file included from /home/biocbuild/bbs-3.19-bioc/R/site-library/BH/include/boost/math/special_functions/detail/round_fwd.hpp:11,
                 from /home/biocbuild/bbs-3.19-bioc/R/site-library/BH/include/boost/math/special_functions/math_fwd.hpp:29,
                 from /home/biocbuild/bbs-3.19-bioc/R/site-library/BH/include/boost/math/special_functions/digamma.hpp:15,
                 from graper_linear_dense_ff.h:2,
                 from fit_graper.cpp:4:
/home/biocbuild/bbs-3.19-bioc/R/site-library/BH/include/boost/math/tools/config.hpp:23:6: warning: #warning "The minimum language standard to use Boost.Math will be C++14 starting in July 2023 (Boost 1.82 release)" [-Wcpp]
   23 | #    warning "The minimum language standard to use Boost.Math will be C++14 starting in July 2023 (Boost 1.82 release)"
      |      ^~~~~~~
g++ -std=gnu++11 -shared -L/home/biocbuild/bbs-3.19-bioc/R/lib -L/usr/local/lib -o graper.so RcppExports.o fit_graper.o -llapack -L/home/biocbuild/bbs-3.19-bioc/R/lib -lRblas -lgfortran -lm -lquadmath -L/home/biocbuild/bbs-3.19-bioc/R/lib -lR
installing to /home/biocbuild/bbs-3.19-bioc/R/site-library/00LOCK-graper/00new/graper/libs
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (graper)

Tests output

graper.Rcheck/tests/testthat.Rout


R version 4.4.1 (2024-06-14) -- "Race for Your Life"
Copyright (C) 2024 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> library(testthat)
> library(graper)
> 
> test_check("graper")
iteration 1
Updating parameters of variational distributions...
Calculating ELB..
ELB=-868.206
ELB improved by inf

iteration 2
Updating parameters of variational distributions...
Calculating ELB..
ELB=-568.256
ELB improved by 299.951

iteration 3
Updating parameters of variational distributions...
Calculating ELB..
ELB=-510.121
ELB improved by 58.1348

iteration 4
Updating parameters of variational distributions...
Calculating ELB..
ELB=-474.766
ELB improved by 35.3546

iteration 5
Updating parameters of variational distributions...
Calculating ELB..
ELB=-459.714
ELB improved by 15.0519

iteration 6
Updating parameters of variational distributions...
Calculating ELB..
ELB=-453.815
ELB improved by 5.89984

iteration 7
Updating parameters of variational distributions...
Calculating ELB..
ELB=-450.558
ELB improved by 3.25661

iteration 8
Updating parameters of variational distributions...
Calculating ELB..
ELB=-447.945
ELB improved by 2.6133

iteration 9
Updating parameters of variational distributions...
Calculating ELB..
ELB=-445.498
ELB improved by 2.44714

iteration 10
Updating parameters of variational distributions...
Calculating ELB..
ELB=-443.029
ELB improved by 2.46813

iteration 11
Updating parameters of variational distributions...
Calculating ELB..
ELB=-440.419
ELB improved by 2.61009

iteration 12
Updating parameters of variational distributions...
Calculating ELB..
ELB=-437.575
ELB improved by 2.84462

iteration 13
Updating parameters of variational distributions...
Calculating ELB..
ELB=-434.458
ELB improved by 3.11641

iteration 14
Updating parameters of variational distributions...
Calculating ELB..
ELB=-431.164
ELB improved by 3.29463

iteration 15
Updating parameters of variational distributions...
Calculating ELB..
ELB=-427.984
ELB improved by 3.17956

iteration 16
Updating parameters of variational distributions...
Calculating ELB..
ELB=-425.33
ELB improved by 2.65456

iteration 17
Updating parameters of variational distributions...
Calculating ELB..
ELB=-423.431
ELB improved by 1.89834

iteration 18
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.193
ELB improved by 1.23813

iteration 19
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.383
ELB improved by 0.810182

iteration 20
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.821
ELB improved by 0.562142

iteration 21
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.406
ELB improved by 0.415036

iteration 22
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.084
ELB improved by 0.321993

iteration 23
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.824
ELB improved by 0.259949

iteration 24
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.607
ELB improved by 0.216737

iteration 25
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.422
ELB improved by 0.185238

iteration 26
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.261
ELB improved by 0.161145

iteration 27
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.119
ELB improved by 0.141849

iteration 28
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.993
ELB improved by 0.125787

iteration 29
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.881
ELB improved by 0.112052

iteration 30
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.781
ELB improved by 0.100153

iteration 31
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.691
ELB improved by 0.0898333

iteration 32
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.61
ELB improved by 0.0809429

iteration 33
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.537
ELB improved by 0.0733497

iteration 34
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.47
ELB improved by 0.0669045

iteration 35
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.408
ELB improved by 0.0614419

iteration 36
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.352
ELB improved by 0.0567969

iteration 37
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.299
ELB improved by 0.0528206

iteration 38
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.249
ELB improved by 0.0493882

iteration 39
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.203
ELB improved by 0.0463997

iteration 40
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.159
ELB improved by 0.0437768

iteration 41
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.118
ELB improved by 0.0414586

iteration 42
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.078
ELB improved by 0.0393973

iteration 43
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.041
ELB improved by 0.0375547

iteration 44
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.005
ELB improved by 0.0359002

iteration 45
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.97
ELB improved by 0.034408

iteration 46
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.937
ELB improved by 0.033057

iteration 47
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.906
ELB improved by 0.0318289

iteration 48
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.875
ELB improved by 0.0307084

iteration 49
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.845
ELB improved by 0.029682

iteration 50
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.816
ELB improved by 0.0287382

iteration 51
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.789
ELB improved by 0.0278669

iteration 52
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.762
ELB improved by 0.0270595

iteration 53
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.735
ELB improved by 0.0263083

iteration 54
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.71
ELB improved by 0.0256069

iteration 55
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.685
ELB improved by 0.0249495

iteration 56
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.66
ELB improved by 0.0243314

iteration 57
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.637
ELB improved by 0.0237483

iteration 58
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.613
ELB improved by 0.0231968

iteration 59
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.591
ELB improved by 0.0226739

iteration 60
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.569
ELB improved by 0.0221771

iteration 61
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.547
ELB improved by 0.0217045

iteration 62
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.526
ELB improved by 0.0212543

iteration 63
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.505
ELB improved by 0.0208252

iteration 64
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.484
ELB improved by 0.0204162

iteration 65
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.464
ELB improved by 0.0200264

iteration 66
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.445
ELB improved by 0.0196551

iteration 67
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.425
ELB improved by 0.019302

iteration 68
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.406
ELB improved by 0.0189665

iteration 69
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.388
ELB improved by 0.0186483

iteration 70
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.369
ELB improved by 0.0183472

iteration 71
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.351
ELB improved by 0.0180628

iteration 72
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.334
ELB improved by 0.0177949

iteration 73
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.316
ELB improved by 0.0175432

iteration 74
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.299
ELB improved by 0.0173074

iteration 75
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.282
ELB improved by 0.0170872

iteration 76
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.265
ELB improved by 0.0168821

iteration 77
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.248
ELB improved by 0.0166918

iteration 78
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.231
ELB improved by 0.0165157

iteration 79
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.215
ELB improved by 0.0163533

iteration 80
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.199
ELB improved by 0.0162041

iteration 81
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.183
ELB improved by 0.0160674

iteration 82
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.167
ELB improved by 0.0159426

iteration 83
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.151
ELB improved by 0.0158289

iteration 84
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.135
ELB improved by 0.0157258

iteration 85
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.12
ELB improved by 0.0156323

iteration 86
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.104
ELB improved by 0.0155479

iteration 87
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.089
ELB improved by 0.0154715

iteration 88
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.073
ELB improved by 0.0154026

iteration 89
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.058
ELB improved by 0.0153402

iteration 90
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.043
ELB improved by 0.0152836

iteration 91
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.027
ELB improved by 0.0152318

iteration 92
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.012
ELB improved by 0.0151842

iteration 93
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.997
ELB improved by 0.0151397

iteration 94
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.982
ELB improved by 0.0150977

iteration 95
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.967
ELB improved by 0.0150572

iteration 96
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.952
ELB improved by 0.0150175

iteration 97
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.937
ELB improved by 0.0149777

iteration 98
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.922
ELB improved by 0.014937

iteration 99
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.907
ELB improved by 0.0148946

iteration 100
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.892
ELB improved by 0.0148497

iteration 101
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.877
ELB improved by 0.0148016

iteration 102
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.863
ELB improved by 0.0147495

iteration 103
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.848
ELB improved by 0.0146928

iteration 104
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.833
ELB improved by 0.0146307

iteration 105
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.819
ELB improved by 0.0145627

iteration 106
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.804
ELB improved by 0.0144881

iteration 107
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.79
ELB improved by 0.0144065

iteration 108
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.776
ELB improved by 0.0143172

iteration 109
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.761
ELB improved by 0.0142201

iteration 110
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.747
ELB improved by 0.0141146

iteration 111
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.733
ELB improved by 0.0140005

iteration 112
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.719
ELB improved by 0.0138777

iteration 113
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.706
ELB improved by 0.013746

iteration 114
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.692
ELB improved by 0.0136055

iteration 115
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.679
ELB improved by 0.0134561

iteration 116
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.665
ELB improved by 0.0132982

iteration 117
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.652
ELB improved by 0.013132

iteration 118
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.639
ELB improved by 0.0129578

iteration 119
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.626
ELB improved by 0.0127762

iteration 120
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.614
ELB improved by 0.0125877

iteration 121
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.601
ELB improved by 0.0123931

iteration 122
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.589
ELB improved by 0.0121931

iteration 123
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.577
ELB improved by 0.0119887

iteration 124
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.566
ELB improved by 0.0117809

iteration 125
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.554
ELB improved by 0.0115708

iteration 126
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.543
ELB improved by 0.0113597

iteration 127
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.531
ELB improved by 0.011149

iteration 128
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.52
ELB improved by 0.0109401

iteration 129
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.51
ELB improved by 0.0107347

iteration 130
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.499
ELB improved by 0.0105348

iteration 131
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.489
ELB improved by 0.0103422

iteration 132
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.479
ELB improved by 0.0101595

iteration 133
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.469
ELB improved by 0.00998918

ELB converged
iteration 1
Updating parameters of variational distributions...
Calculating ELB..
ELB=-901.016
ELB improved by inf

iteration 2
Updating parameters of variational distributions...
Calculating ELB..
ELB=-602.2
ELB improved by 298.817

iteration 3
Updating parameters of variational distributions...
Calculating ELB..
ELB=-540.531
ELB improved by 61.6689

iteration 4
Updating parameters of variational distributions...
Calculating ELB..
ELB=-493.672
ELB improved by 46.8591

iteration 5
Updating parameters of variational distributions...
Calculating ELB..
ELB=-469.977
ELB improved by 23.6944

iteration 6
Updating parameters of variational distributions...
Calculating ELB..
ELB=-460.051
ELB improved by 9.92575

iteration 7
Updating parameters of variational distributions...
Calculating ELB..
ELB=-454.551
ELB improved by 5.50034

iteration 8
Updating parameters of variational distributions...
Calculating ELB..
ELB=-450.291
ELB improved by 4.25998

iteration 9
Updating parameters of variational distributions...
Calculating ELB..
ELB=-446.377
ELB improved by 3.9142

iteration 10
Updating parameters of variational distributions...
Calculating ELB..
ELB=-442.527
ELB improved by 3.85019

iteration 11
Updating parameters of variational distributions...
Calculating ELB..
ELB=-438.684
ELB improved by 3.84249

iteration 12
Updating parameters of variational distributions...
Calculating ELB..
ELB=-434.954
ELB improved by 3.73041

iteration 13
Updating parameters of variational distributions...
Calculating ELB..
ELB=-431.56
ELB improved by 3.39435

iteration 14
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.738
ELB improved by 2.82122

iteration 15
Updating parameters of variational distributions...
Calculating ELB..
ELB=-426.609
ELB improved by 2.12885

iteration 16
Updating parameters of variational distributions...
Calculating ELB..
ELB=-425.116
ELB improved by 1.49385

iteration 17
Updating parameters of variational distributions...
Calculating ELB..
ELB=-424.089
ELB improved by 1.02654

iteration 18
Updating parameters of variational distributions...
Calculating ELB..
ELB=-423.36
ELB improved by 0.72876

iteration 19
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.809
ELB improved by 0.551188

iteration 20
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.363
ELB improved by 0.445914

iteration 21
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.982
ELB improved by 0.381543

iteration 22
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.641
ELB improved by 0.340496

iteration 23
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.328
ELB improved by 0.313479

iteration 24
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.032
ELB improved by 0.295546

iteration 25
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.748
ELB improved by 0.283817

iteration 26
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.472
ELB improved by 0.276123

iteration 27
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.202
ELB improved by 0.270185

iteration 28
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.939
ELB improved by 0.263439

iteration 29
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.685
ELB improved by 0.253744

iteration 30
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.444
ELB improved by 0.24046

iteration 31
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.22
ELB improved by 0.224607

iteration 32
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.012
ELB improved by 0.207922

iteration 33
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.82
ELB improved by 0.191883

iteration 34
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.643
ELB improved by 0.177394

iteration 35
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.478
ELB improved by 0.164906

iteration 36
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.323
ELB improved by 0.154601

iteration 37
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.177
ELB improved by 0.146516

iteration 38
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.036
ELB improved by 0.140545

iteration 39
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.9
ELB improved by 0.136363

iteration 40
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.766
ELB improved by 0.13333

iteration 41
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.636
ELB improved by 0.130518

iteration 42
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.509
ELB improved by 0.12702

iteration 43
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.386
ELB improved by 0.122415

iteration 44
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.269
ELB improved by 0.116959

iteration 45
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.158
ELB improved by 0.111311

iteration 46
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.052
ELB improved by 0.106095

iteration 47
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.95
ELB improved by 0.101693

iteration 48
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.852
ELB improved by 0.0982731

iteration 49
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.756
ELB improved by 0.0958943

iteration 50
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.662
ELB improved by 0.0945555

iteration 51
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.567
ELB improved by 0.0941685

iteration 52
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.473
ELB improved by 0.0944554

iteration 53
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.378
ELB improved by 0.0948212

iteration 54
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.284
ELB improved by 0.0943455

iteration 55
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.192
ELB improved by 0.0920817

iteration 56
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.104
ELB improved by 0.0876116

iteration 57
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.023
ELB improved by 0.0813598

iteration 58
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.948
ELB improved by 0.0742781

iteration 59
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.881
ELB improved by 0.0672419

iteration 60
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.82
ELB improved by 0.0607365

iteration 61
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.766
ELB improved by 0.0549112

iteration 62
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.716
ELB improved by 0.0497471

iteration 63
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.671
ELB improved by 0.0451727

iteration 64
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.63
ELB improved by 0.0411134

iteration 65
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.592
ELB improved by 0.0375046

iteration 66
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.558
ELB improved by 0.0342929

iteration 67
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.526
ELB improved by 0.0314337

iteration 68
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.497
ELB improved by 0.0288897

iteration 69
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.471
ELB improved by 0.0266297

iteration 70
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.446
ELB improved by 0.0246274

iteration 71
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.423
ELB improved by 0.0228612

iteration 72
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.402
ELB improved by 0.0213133

iteration 73
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.382
ELB improved by 0.0199694

iteration 74
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.363
ELB improved by 0.018819

iteration 75
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.345
ELB improved by 0.0178554

iteration 76
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.328
ELB improved by 0.0170755

iteration 77
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.312
ELB improved by 0.0164806

iteration 78
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.296
ELB improved by 0.0160763

iteration 79
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.28
ELB improved by 0.0158723

iteration 80
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.264
ELB improved by 0.0158821

iteration 81
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.248
ELB improved by 0.0161197

iteration 82
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.231
ELB improved by 0.0165944

iteration 83
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.214
ELB improved by 0.0173011

iteration 84
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.196
ELB improved by 0.0182052

iteration 85
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.176
ELB improved by 0.0192251

iteration 86
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.156
ELB improved by 0.0202198

iteration 87
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.135
ELB improved by 0.0209964

iteration 88
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.114
ELB improved by 0.0213501

iteration 89
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.093
ELB improved by 0.0211323

iteration 90
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.072
ELB improved by 0.020313

iteration 91
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.053
ELB improved by 0.0189969

iteration 92
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.036
ELB improved by 0.0173803

iteration 93
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.02
ELB improved by 0.0156798

iteration 94
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.006
ELB improved by 0.0140741

iteration 95
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.994
ELB improved by 0.0126809

iteration 96
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.982
ELB improved by 0.0115595

iteration 97
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.971
ELB improved by 0.0107278

iteration 98
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.961
ELB improved by 0.0101777

iteration 99
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.951
ELB improved by 0.00988742

ELB converged
iteration 1
Updating parameters of variational distributions...
Calculating ELB..
ELB=-855.316
ELB improved by inf

iteration 2
Updating parameters of variational distributions...
Calculating ELB..
ELB=-555.388
ELB improved by 299.929

iteration 3
Updating parameters of variational distributions...
Calculating ELB..
ELB=-496.705
ELB improved by 58.6822

iteration 4
Updating parameters of variational distributions...
Calculating ELB..
ELB=-464.772
ELB improved by 31.9338

iteration 5
Updating parameters of variational distributions...
Calculating ELB..
ELB=-450.689
ELB improved by 14.0822

iteration 6
Updating parameters of variational distributions...
Calculating ELB..
ELB=-442.313
ELB improved by 8.3766

iteration 7
Updating parameters of variational distributions...
Calculating ELB..
ELB=-434.564
ELB improved by 7.74886

iteration 8
Updating parameters of variational distributions...
Calculating ELB..
ELB=-425.734
ELB improved by 8.83037

iteration 9
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.968
ELB improved by 9.76518

iteration 10
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.158
ELB improved by 8.80996

iteration 11
Updating parameters of variational distributions...
Calculating ELB..
ELB=-400.916
ELB improved by 6.24215

iteration 12
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.975
ELB improved by 3.94154

iteration 13
Updating parameters of variational distributions...
Calculating ELB..
ELB=-394.374
ELB improved by 2.60087

iteration 14
Updating parameters of variational distributions...
Calculating ELB..
ELB=-392.452
ELB improved by 1.92185

iteration 15
Updating parameters of variational distributions...
Calculating ELB..
ELB=-390.869
ELB improved by 1.58322

iteration 16
Updating parameters of variational distributions...
Calculating ELB..
ELB=-389.447
ELB improved by 1.42177

iteration 17
Updating parameters of variational distributions...
Calculating ELB..
ELB=-388.057
ELB improved by 1.38996

iteration 18
Updating parameters of variational distributions...
Calculating ELB..
ELB=-386.497
ELB improved by 1.55974

iteration 19
Updating parameters of variational distributions...
Calculating ELB..
ELB=-384.322
ELB improved by 2.17569

iteration 20
Updating parameters of variational distributions...
Calculating ELB..
ELB=-381.311
ELB improved by 3.01045

iteration 21
Updating parameters of variational distributions...
Calculating ELB..
ELB=-378.11
ELB improved by 3.20105

iteration 22
Updating parameters of variational distributions...
Calculating ELB..
ELB=-375.201
ELB improved by 2.90912

iteration 23
Updating parameters of variational distributions...
Calculating ELB..
ELB=-372.53
ELB improved by 2.67141

iteration 24
Updating parameters of variational distributions...
Calculating ELB..
ELB=-370.045
ELB improved by 2.48459

iteration 25
Updating parameters of variational distributions...
Calculating ELB..
ELB=-367.813
ELB improved by 2.23187

iteration 26
Updating parameters of variational distributions...
Calculating ELB..
ELB=-365.934
ELB improved by 1.87906

iteration 27
Updating parameters of variational distributions...
Calculating ELB..
ELB=-364.477
ELB improved by 1.45682

iteration 28
Updating parameters of variational distributions...
Calculating ELB..
ELB=-363.43
ELB improved by 1.04768

iteration 29
Updating parameters of variational distributions...
Calculating ELB..
ELB=-362.707
ELB improved by 0.722937

iteration 30
Updating parameters of variational distributions...
Calculating ELB..
ELB=-362.209
ELB improved by 0.497673

iteration 31
Updating parameters of variational distributions...
Calculating ELB..
ELB=-361.858
ELB improved by 0.351199

iteration 32
Updating parameters of variational distributions...
Calculating ELB..
ELB=-361.601
ELB improved by 0.256967

iteration 33
Updating parameters of variational distributions...
Calculating ELB..
ELB=-361.406
ELB improved by 0.194903

iteration 34
Updating parameters of variational distributions...
Calculating ELB..
ELB=-361.253
ELB improved by 0.152398

iteration 35
Updating parameters of variational distributions...
Calculating ELB..
ELB=-361.131
ELB improved by 0.122054

iteration 36
Updating parameters of variational distributions...
Calculating ELB..
ELB=-361.032
ELB improved by 0.0995701

iteration 37
Updating parameters of variational distributions...
Calculating ELB..
ELB=-360.949
ELB improved by 0.0823865

iteration 38
Updating parameters of variational distributions...
Calculating ELB..
ELB=-360.881
ELB improved by 0.0689249

iteration 39
Updating parameters of variational distributions...
Calculating ELB..
ELB=-360.822
ELB improved by 0.0581712

iteration 40
Updating parameters of variational distributions...
Calculating ELB..
ELB=-360.773
ELB improved by 0.049448

iteration 41
Updating parameters of variational distributions...
Calculating ELB..
ELB=-360.731
ELB improved by 0.0422862

iteration 42
Updating parameters of variational distributions...
Calculating ELB..
ELB=-360.694
ELB improved by 0.03635

iteration 43
Updating parameters of variational distributions...
Calculating ELB..
ELB=-360.663
ELB improved by 0.0313923

iteration 44
Updating parameters of variational distributions...
Calculating ELB..
ELB=-360.636
ELB improved by 0.0272262

iteration 45
Updating parameters of variational distributions...
Calculating ELB..
ELB=-360.612
ELB improved by 0.0237078

iteration 46
Updating parameters of variational distributions...
Calculating ELB..
ELB=-360.591
ELB improved by 0.0207239

iteration 47
Updating parameters of variational distributions...
Calculating ELB..
ELB=-360.573
ELB improved by 0.0181842

iteration 48
Updating parameters of variational distributions...
Calculating ELB..
ELB=-360.557
ELB improved by 0.0160158

iteration 49
Updating parameters of variational distributions...
Calculating ELB..
ELB=-360.543
ELB improved by 0.0141593

iteration 50
Updating parameters of variational distributions...
Calculating ELB..
ELB=-360.53
ELB improved by 0.0125657

iteration 51
Updating parameters of variational distributions...
Calculating ELB..
ELB=-360.519
ELB improved by 0.0111946

iteration 52
Updating parameters of variational distributions...
Calculating ELB..
ELB=-360.509
ELB improved by 0.0100122

iteration 53
Updating parameters of variational distributions...
Calculating ELB..
ELB=-360.5
ELB improved by 0.00899024

ELB converged
iteration 1
Updating parameters of variational distributions...
Calculating ELB..
ELB=-893.305
ELB improved by inf

iteration 2
Updating parameters of variational distributions...
Calculating ELB..
ELB=-581.278
ELB improved by 312.027

iteration 3
Updating parameters of variational distributions...
Calculating ELB..
ELB=-523.589
ELB improved by 57.6888

iteration 4
Updating parameters of variational distributions...
Calculating ELB..
ELB=-486.046
ELB improved by 37.5429

iteration 5
Updating parameters of variational distributions...
Calculating ELB..
ELB=-467.115
ELB improved by 18.9313

iteration 6
Updating parameters of variational distributions...
Calculating ELB..
ELB=-457.574
ELB improved by 9.54126

iteration 7
Updating parameters of variational distributions...
Calculating ELB..
ELB=-451.29
ELB improved by 6.28363

iteration 8
Updating parameters of variational distributions...
Calculating ELB..
ELB=-445.938
ELB improved by 5.35181

iteration 9
Updating parameters of variational distributions...
Calculating ELB..
ELB=-440.718
ELB improved by 5.22033

iteration 10
Updating parameters of variational distributions...
Calculating ELB..
ELB=-435.405
ELB improved by 5.31276

iteration 11
Updating parameters of variational distributions...
Calculating ELB..
ELB=-430.227
ELB improved by 5.17819

iteration 12
Updating parameters of variational distributions...
Calculating ELB..
ELB=-425.686
ELB improved by 4.54077

iteration 13
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.175
ELB improved by 3.51113

iteration 14
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.696
ELB improved by 2.47868

iteration 15
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.997
ELB improved by 1.69919

iteration 16
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.817
ELB improved by 1.18046

iteration 17
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.976
ELB improved by 0.840351

iteration 18
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.363
ELB improved by 0.613379

iteration 19
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.903
ELB improved by 0.460189

iteration 20
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.547
ELB improved by 0.35556

iteration 21
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.264
ELB improved by 0.282937

iteration 22
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.033
ELB improved by 0.231543

iteration 23
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.838
ELB improved by 0.194313

iteration 24
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.672
ELB improved by 0.166649

iteration 25
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.526
ELB improved by 0.145602

iteration 26
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.397
ELB improved by 0.129288

iteration 27
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.28
ELB improved by 0.116482

iteration 28
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.174
ELB improved by 0.106364

iteration 29
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.076
ELB improved by 0.0983671

iteration 30
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.984
ELB improved by 0.0920888

iteration 31
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.896
ELB improved by 0.0872369

iteration 32
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.813
ELB improved by 0.0835975

iteration 33
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.732
ELB improved by 0.0810142

iteration 34
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.652
ELB improved by 0.0793737

iteration 35
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.574
ELB improved by 0.0785975

iteration 36
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.495
ELB improved by 0.0786348

iteration 37
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.416
ELB improved by 0.0794586

iteration 38
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.335
ELB improved by 0.0810628

iteration 39
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.251
ELB improved by 0.0834605

iteration 40
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.164
ELB improved by 0.0866825

iteration 41
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.074
ELB improved by 0.0907766

iteration 42
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.978
ELB improved by 0.0958075

iteration 43
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.876
ELB improved by 0.101855

iteration 44
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.767
ELB improved by 0.109012

iteration 45
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.65
ELB improved by 0.117383

iteration 46
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.523
ELB improved by 0.127078

iteration 47
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.384
ELB improved by 0.138199

iteration 48
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.234
ELB improved by 0.150832

iteration 49
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.068
ELB improved by 0.165019

iteration 50
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.888
ELB improved by 0.180725

iteration 51
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.69
ELB improved by 0.197797

iteration 52
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.474
ELB improved by 0.215907

iteration 53
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.24
ELB improved by 0.234499

iteration 54
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.987
ELB improved by 0.252756

iteration 55
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.717
ELB improved by 0.269609

iteration 56
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.433
ELB improved by 0.28383

iteration 57
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.139
ELB improved by 0.294201

iteration 58
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.839
ELB improved by 0.299726

iteration 59
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.54
ELB improved by 0.299824

iteration 60
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.245
ELB improved by 0.294446

iteration 61
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.961
ELB improved by 0.284068

iteration 62
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.692
ELB improved by 0.269583

iteration 63
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.439
ELB improved by 0.252114

iteration 64
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.207
ELB improved by 0.23282

iteration 65
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.994
ELB improved by 0.212733

iteration 66
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.801
ELB improved by 0.192671

iteration 67
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.628
ELB improved by 0.17322

iteration 68
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.473
ELB improved by 0.154774

iteration 69
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.336
ELB improved by 0.13758

iteration 70
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.214
ELB improved by 0.121785

iteration 71
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.106
ELB improved by 0.10746

iteration 72
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.012
ELB improved by 0.0946163

iteration 73
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.929
ELB improved by 0.0832105

iteration 74
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.855
ELB improved by 0.0731599

iteration 75
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.791
ELB improved by 0.0643538

iteration 76
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.734
ELB improved by 0.0566673

iteration 77
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.684
ELB improved by 0.0499727

iteration 78
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.64
ELB improved by 0.0441472

iteration 79
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.601
ELB improved by 0.0390777

iteration 80
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.566
ELB improved by 0.0346629

iteration 81
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.536
ELB improved by 0.0308135

iteration 82
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.508
ELB improved by 0.0274522

iteration 83
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.484
ELB improved by 0.0245121

iteration 84
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.462
ELB improved by 0.0219357

iteration 85
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.442
ELB improved by 0.0196738

iteration 86
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.424
ELB improved by 0.0176843

iteration 87
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.408
ELB improved by 0.015931

iteration 88
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.394
ELB improved by 0.014383

iteration 89
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.381
ELB improved by 0.0130137

iteration 90
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.369
ELB improved by 0.0118002

iteration 91
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.359
ELB improved by 0.0107229

iteration 92
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.349
ELB improved by 0.00976474

ELB converged
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 24 ]
> 
> proc.time()
   user  system elapsed 
  2.046   0.163   2.199

Example timings

graper.Rcheck/graper-Ex.timings

name	user	system	elapsed
coef.graper	0.054	0.015	0.069
getPIPs	0.047	0.015	0.061
graper	0.084	0.020	0.104
makeExampleData	0.011	0.000	0.011
makeExampleDataWithUnequalGroups	0.013	0.000	0.013
plotELBO	0.212	0.040	0.252
plotGroupPenalties	0.719	0.012	0.731
plotPosterior	0.607	0.028	0.635
predict.graper	2.042	0.096	2.138
print.graper	0.053	0.012	0.065