Back to Mac ARM64 build report for BioC 3.17 |
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This page was generated on 2023-10-20 09:38:01 -0400 (Fri, 20 Oct 2023).
Hostname | OS | Arch (*) | R version | Installed pkgs |
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kjohnson2 | macOS 12.6.1 Monterey | arm64 | 4.3.1 (2023-06-16) -- "Beagle Scouts" | 4347 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
Package 531/2230 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
densvis 1.10.3 (landing page) Alan O'Callaghan
| kjohnson2 | macOS 12.6.1 Monterey / arm64 | OK | ERROR | skipped | skipped | ||||||||
To the developers/maintainers of the densvis package: - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
Package: densvis |
Version: 1.10.3 |
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL densvis |
StartedAt: 2023-10-15 15:40:50 -0400 (Sun, 15 Oct 2023) |
EndedAt: 2023-10-15 15:41:32 -0400 (Sun, 15 Oct 2023) |
EllapsedTime: 42.0 seconds |
RetCode: 0 |
Status: OK |
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL densvis ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library’ * installing *source* package ‘densvis’ ... ** using non-staged installation via StagedInstall field ** libs using C++ compiler: ‘Apple clang version 14.0.0 (clang-1400.0.29.202)’ using C++14 using SDK: ‘MacOSX11.3.sdk’ clang++ -arch arm64 -std=gnu++14 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/Rcpp/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c RcppExports.cpp -o RcppExports.o clang++ -arch arm64 -std=gnu++14 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/Rcpp/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c densne.cpp -o densne.o densne.cpp:181:24: warning: variable 'row_P' is used uninitialized whenever 'for' loop exits because its condition is false [-Wsometimes-uninitialized] for(int i = 0; i < N * N; i++) P[i] /= sum_P; ^~~~~~~~~ densne.cpp:201:33: note: uninitialized use occurs here computeExpectedLogDist(&ro, row_P, col_P, val_P, val_D, N, logdist_shift); ^~~~~ densne.cpp:181:24: note: remove the condition if it is always true for(int i = 0; i < N * N; i++) P[i] /= sum_P; ^~~~~~~~~ densne.cpp:154:35: note: initialize the variable 'row_P' to silence this warning double* P; unsigned int* row_P; unsigned int* col_P; double* val_P; double* val_D; ^ = nullptr densne.cpp:181:24: warning: variable 'col_P' is used uninitialized whenever 'for' loop exits because its condition is false [-Wsometimes-uninitialized] for(int i = 0; i < N * N; i++) P[i] /= sum_P; ^~~~~~~~~ densne.cpp:201:40: note: uninitialized use occurs here computeExpectedLogDist(&ro, row_P, col_P, val_P, val_D, N, logdist_shift); ^~~~~ densne.cpp:181:24: note: remove the condition if it is always true for(int i = 0; i < N * N; i++) P[i] /= sum_P; ^~~~~~~~~ densne.cpp:154:56: note: initialize the variable 'col_P' to silence this warning double* P; unsigned int* row_P; unsigned int* col_P; double* val_P; double* val_D; ^ = nullptr densne.cpp:181:24: warning: variable 'val_P' is used uninitialized whenever 'for' loop exits because its condition is false [-Wsometimes-uninitialized] for(int i = 0; i < N * N; i++) P[i] /= sum_P; ^~~~~~~~~ densne.cpp:201:47: note: uninitialized use occurs here computeExpectedLogDist(&ro, row_P, col_P, val_P, val_D, N, logdist_shift); ^~~~~ densne.cpp:181:24: note: remove the condition if it is always true for(int i = 0; i < N * N; i++) P[i] /= sum_P; ^~~~~~~~~ densne.cpp:154:71: note: initialize the variable 'val_P' to silence this warning double* P; unsigned int* row_P; unsigned int* col_P; double* val_P; double* val_D; ^ = nullptr densne.cpp:181:24: warning: variable 'val_D' is used uninitialized whenever 'for' loop exits because its condition is false [-Wsometimes-uninitialized] for(int i = 0; i < N * N; i++) P[i] /= sum_P; ^~~~~~~~~ densne.cpp:201:54: note: uninitialized use occurs here computeExpectedLogDist(&ro, row_P, col_P, val_P, val_D, N, logdist_shift); ^~~~~ densne.cpp:181:24: note: remove the condition if it is always true for(int i = 0; i < N * N; i++) P[i] /= sum_P; ^~~~~~~~~ densne.cpp:154:86: note: initialize the variable 'val_D' to silence this warning double* P; unsigned int* row_P; unsigned int* col_P; double* val_P; double* val_D; ^ = nullptr 4 warnings generated. clang++ -arch arm64 -std=gnu++14 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/Rcpp/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c densvis.cpp -o densvis.o clang++ -arch arm64 -std=gnu++14 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/Rcpp/include' -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c sptree.cpp -o sptree.o clang++ -arch arm64 -std=gnu++14 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/opt/R/arm64/lib -o densvis.so RcppExports.o densne.o densvis.o sptree.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/opt/gfortran/lib/gcc/aarch64-apple-darwin20.0/12.2.0 -L/opt/gfortran/lib -lgfortran -lemutls_w -lquadmath -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation ld: warning: could not create compact unwind for ___emutls_get_address: registers 23 and 24 not saved contiguously in frame installing to /Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/densvis/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded * DONE (densvis)