Back to Mac ARM64 build report for BioC 3.17
ABC[D]EFGHIJKLMNOPQRSTUVWXYZ

This page was generated on 2023-10-20 09:38:01 -0400 (Fri, 20 Oct 2023).

HostnameOSArch (*)R versionInstalled pkgs
kjohnson2macOS 12.6.1 Montereyarm644.3.1 (2023-06-16) -- "Beagle Scouts" 4347
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 531/2230HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
densvis 1.10.3  (landing page)
Alan O'Callaghan
Snapshot Date: 2023-10-15 14:00:07 -0400 (Sun, 15 Oct 2023)
git_url: https://git.bioconductor.org/packages/densvis
git_branch: RELEASE_3_17
git_last_commit: 3f6ce50
git_last_commit_date: 2023-07-30 21:07:16 -0400 (Sun, 30 Jul 2023)
kjohnson2macOS 12.6.1 Monterey / arm64  OK    ERROR  skippedskipped

BUILD results for densvis on kjohnson2


To the developers/maintainers of the densvis package:
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results

Summary

Package: densvis
Version: 1.10.3
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data densvis
StartedAt: 2023-10-16 01:26:21 -0400 (Mon, 16 Oct 2023)
EndedAt: 2023-10-16 01:27:38 -0400 (Mon, 16 Oct 2023)
EllapsedTime: 76.6 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data densvis
###
##############################################################################
##############################################################################


* checking for file ‘densvis/DESCRIPTION’ ... OK
* preparing ‘densvis’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘densvis.Rmd’ using rmarkdown

Quitting from lines 123-130 [run-densmap] (densvis.Rmd)
Error: processing vignette 'densvis.Rmd' failed with diagnostics:
ImportError: dlopen(/Users/biocbuild/Library/Caches/org.R-project.R/R/basilisk/1.12.1/densvis/1.10.3/densvis/lib/python3.8/site-packages/scipy/special/_ufuncs.cpython-38-darwin.so, 0x0002): Library not loaded: '@rpath/libgcc_s.2.dylib'
  Referenced from: '/Users/biocbuild/Library/Caches/org.R-project.R/R/basilisk/1.12.1/densvis/1.10.3/densvis/lib/python3.8/site-packages/scipy/special/_ufuncs.cpython-38-darwin.so'
<...truncated...>.2.dylib' (no such file), '/Users/biocbuild/Library/Caches/org.R-project.R/R/basilisk/1.12.1/densvis/1.10.3/densvis/lib/python3.8/site-packages/scipy/special/../../../../libgcc_s.2.dylib' (no such file), '/Users/biocbuild/Library/Caches/org.R-project.R/R/basilisk/1.12.1/densvis/1.10.3/densvis/lib/libgcc_s.2.dylib' (no such file), '/Library/Frameworks/R.framework/Resources/lib/libgcc_s.2.dylib' (no such file), '/usr/local/jdk-18.0.1.1.jdk/Contents/Home/lib/server/libgcc_s.2.dylib' (no such file)
Run `reticulate::py_last_error()` for details.
--- failed re-building ‘densvis.Rmd’

SUMMARY: processing the following file failed:
  ‘densvis.Rmd’

Error: Vignette re-building failed.
Execution halted