SLGI 1.0.0
Nolwenn Le Meur
| Snapshot Date: 2008-10-16 00:10:09 -0700 (Thu, 16 Oct 2008) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_2/madman/Rpacks/SLGI | | Last Changed Rev: 31430 / Revision: 34573 | | Last Changed Date: 2008-04-29 16:50:18 -0700 (Tue, 29 Apr 2008) |
| lamb1 | Linux (SUSE 10.1) / x86_64 | OK | OK | |
| wilson2 | Linux (openSUSE 10.3) / x86_64 | OK | OK | |
| wellington | Linux (openSUSE 10.3) / i686 | OK | OK | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | OK | [ OK ] | OK |
| pitt | Mac OS X Tiger (10.4.11) / i386 | OK | OK | OK |
* checking for working pdflatex ... OK
* using log directory 'E:/biocbld/bbs-2.2-bioc/meat/SLGI.Rcheck'
* using R version 2.7.2 (2008-08-25)
* using session charset: ISO8859-1
* checking for file 'SLGI/DESCRIPTION' ... OK
* this is package 'SLGI' version '1.0.0'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'SLGI' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking data for non-ASCII characters ... OK
* creating SLGI-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... OK
* creating SLGI-manual.tex ... OK
* checking SLGI-manual.tex using pdflatex ... OK
installing R.css in E:/biocbld/bbs-2.2-bioc/meat/SLGI.Rcheck
---------- Making package SLGI ------------
adding build stamp to DESCRIPTION
installing NAMESPACE file and metadata
installing R files
installing inst files
installing data files
preparing package SLGI for lazy loading
Loading required package: ScISI
Loading required package: apComplex
Loading required package: graph
Loading required package: RBGL
Loading required package: Rgraphviz
Loading required package: grid
Loading required package: YEAST
******* Deprecation warning *******:
The package 'YEAST' is deprecated and will not be supported in the future.
Instead we strongly reccomend that you should start using the 'org.Sc.sgd.db' package.
We hope you will enjoy these new packages. If you still have questions, you can search
(http://dir.gmane.org/gmane.science.biology.informatics.conductor) or ask the mailing list
(http://bioconductor.org/docs/mailList.html).
Loading required package: GO
******* Deprecation warning *******:
The package 'GO' is deprecated and will not be supported in the future.
Instead we strongly reccomend that you should start using the 'GO.db' package.
We hope you will enjoy these new packages. If you still have questions, you can search
(http://dir.gmane.org/gmane.science.biology.informatics.conductor) or ask the mailing list
(http://bioconductor.org/docs/mailList.html).
Loading required package: GOstats
Loading required package: GO.db
Loading required package: AnnotationDbi
Loading required package: Biobase
Loading required package: tools
Welcome to Bioconductor
Vignettes contain introductory material. To view, type
'openVignette()'. To cite Bioconductor, see
'citation("Biobase")' and for packages 'citation(pkgname)'.
Loading required package: DBI
Loading required package: RSQLite
Attaching package: 'GO.db'
The following object(s) are masked from package:GO :
GO,
GOBPANCESTOR,
GOBPCHILDREN,
GOBPOFFSPRING,
GOBPPARENTS,
GOCCANCESTOR,
GOCCCHILDREN,
GOCCOFFSPRING,
GOCCPARENTS,
GOMAPCOUNTS,
GOMFANCESTOR,
GOMFCHILDREN,
GOMFOFFSPRING,
GOMFPARENTS,
GOOBSOLETE,
GOSYNONYM,
GOTERM
Loading required package: annotate
Loading required package: xtable
Attaching package: 'annotate'
The following object(s) are masked from package:Rgraphviz :
toFile
Loading required package: Category
Loading required package: genefilter
Loading required package: survival
Loading required package: splines
Loading required package: Rintact
Loading required package: XML
Attaching package: 'XML'
The following object(s) are masked from package:graph :
addNode
Loading required package: hypergraph
Attaching package: 'hypergraph'
The following object(s) are masked from package:xtable :
label,
label<-
The following object(s) are masked from package:AnnotationDbi :
head,
tail
The following object(s) are masked from package:Rgraphviz :
head,
tail
The following object(s) are masked from package:utils :
head,
tail
Loading required package: lattice
Loading required package: org.Sc.sgd.db
installing man source files
installing indices
not zipping data
installing help
>>> Building/Updating help pages for package 'SLGI'
Formats: text html latex example chm
Atong text html latex example chm
AtongFnDomain text html latex example chm
AtongPair text html latex example chm
Boeke text html latex chm
SDL text html latex example chm
SGA text html latex example chm
SGD.SL text html latex example chm
TFmat text html latex example chm
byComplex text html latex example chm
comemberIn text html latex example chm
compare text html latex example chm
congruence text html latex example chm
createSquareMatrix text html latex example chm
dSLAM.GPL1444 text html latex chm
domainDist text html latex example chm
essglist text html latex example chm
getFASTAname text html latex example chm
getInteraction text html latex example chm
getSharedDomains text html latex example chm
getSharedInteraction text html latex example chm
getTestedPairs text html latex example chm
getUniquePairs text html latex example chm
gi2005 text html latex example chm
gi2007 text html latex example chm
gi2Interactome text html latex example chm
hyperG text html latex example chm
iSummary text html latex example chm
modelSLGI text html latex example chm
normInteraction text html latex example chm
plot text html latex example chm
seqMatcherAlign text html latex example chm
sharedBy text html latex example chm
sharedInt text html latex example chm
siResult-class text html latex example chm
test2Interact text html latex example chm
topInteraction text html latex example chm
twoWayTable text html latex example chm
withinComplex text html latex example chm
Microsoft HTML Help Compiler 4.74.8702
Compiling e:\biocbld\bbs-2.2-bioc\meat\SLGI.Rcheck\00_pkg_src\SLGI\chm\SLGI.chm
Compile time: 0 minutes, 0 seconds
39 Topics
112 Local links
8 Internet links
1 Graphic
Created e:\biocbld\bbs-2.2-bioc\meat\SLGI.Rcheck\00_pkg_src\SLGI\chm\SLGI.chm, 58,483 bytes
Compression decreased file by 58,054 bytes.
adding MD5 sums
* DONE (SLGI)