SLGI 1.0.0
Nolwenn Le Meur
| Snapshot Date: 2008-10-16 00:10:09 -0700 (Thu, 16 Oct 2008) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_2/madman/Rpacks/SLGI | | Last Changed Rev: 31430 / Revision: 34573 | | Last Changed Date: 2008-04-29 16:50:18 -0700 (Tue, 29 Apr 2008) |
| lamb1 | Linux (SUSE 10.1) / x86_64 | [ OK ] | OK | |
| wilson2 | Linux (openSUSE 10.3) / x86_64 | OK | OK | |
| wellington | Linux (openSUSE 10.3) / i686 | OK | OK | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | OK | OK | OK |
| pitt | Mac OS X Tiger (10.4.11) / i386 | OK | OK | OK |
* checking for file 'SLGI/DESCRIPTION' ... OK
* preparing 'SLGI':
* checking DESCRIPTION meta-information ... OK
* installing the package to re-build vignettes
* Installing *source* package 'SLGI' ...
** R
** data
** inst
** preparing package for lazy loading
Loading required package: ScISI
Loading required package: apComplex
Loading required package: graph
Loading required package: RBGL
Loading required package: Rgraphviz
Loading required package: grid
Loading required package: YEAST
******* Deprecation warning *******:
The package 'YEAST' is deprecated and will not be supported in the future.
Instead we strongly reccomend that you should start using the 'org.Sc.sgd.db' package.
We hope you will enjoy these new packages. If you still have questions, you can search
(http://dir.gmane.org/gmane.science.biology.informatics.conductor) or ask the mailing list
(http://bioconductor.org/docs/mailList.html).
Loading required package: GO
******* Deprecation warning *******:
The package 'GO' is deprecated and will not be supported in the future.
Instead we strongly reccomend that you should start using the 'GO.db' package.
We hope you will enjoy these new packages. If you still have questions, you can search
(http://dir.gmane.org/gmane.science.biology.informatics.conductor) or ask the mailing list
(http://bioconductor.org/docs/mailList.html).
Loading required package: GOstats
Loading required package: GO.db
Loading required package: AnnotationDbi
Loading required package: Biobase
Loading required package: tools
Welcome to Bioconductor
Vignettes contain introductory material. To view, type
'openVignette()'. To cite Bioconductor, see
'citation("Biobase")' and for packages 'citation(pkgname)'.
Loading required package: DBI
Loading required package: RSQLite
Attaching package: 'GO.db'
The following object(s) are masked from package:GO :
GO,
GOBPANCESTOR,
GOBPCHILDREN,
GOBPOFFSPRING,
GOBPPARENTS,
GOCCANCESTOR,
GOCCCHILDREN,
GOCCOFFSPRING,
GOCCPARENTS,
GOMAPCOUNTS,
GOMFANCESTOR,
GOMFCHILDREN,
GOMFOFFSPRING,
GOMFPARENTS,
GOOBSOLETE,
GOSYNONYM,
GOTERM
Loading required package: annotate
Loading required package: xtable
Attaching package: 'annotate'
The following object(s) are masked from package:Rgraphviz :
toFile
Loading required package: Category
Loading required package: genefilter
Loading required package: survival
Loading required package: splines
Loading required package: Rintact
Loading required package: XML
Attaching package: 'XML'
The following object(s) are masked from package:graph :
addNode
Loading required package: hypergraph
Attaching package: 'hypergraph'
The following object(s) are masked from package:xtable :
label,
label<-
The following object(s) are masked from package:AnnotationDbi :
head,
tail
The following object(s) are masked from package:Rgraphviz :
head,
tail
The following object(s) are masked from package:utils :
head,
tail
Loading required package: lattice
Loading required package: org.Sc.sgd.db
** help
>>> Building/Updating help pages for package 'SLGI'
Formats: text html latex example
Atong text html latex example
AtongFnDomain text html latex example
AtongPair text html latex example
Boeke text html latex
SDL text html latex example
SGA text html latex example
SGD.SL text html latex example
TFmat text html latex example
byComplex text html latex example
comemberIn text html latex example
compare text html latex example
congruence text html latex example
createSquareMatrix text html latex example
dSLAM.GPL1444 text html latex
domainDist text html latex example
essglist text html latex example
getFASTAname text html latex example
getInteraction text html latex example
getSharedDomains text html latex example
getSharedInteraction text html latex example
getTestedPairs text html latex example
getUniquePairs text html latex example
gi2005 text html latex example
gi2007 text html latex example
gi2Interactome text html latex example
hyperG text html latex example
iSummary text html latex example
modelSLGI text html latex example
normInteraction text html latex example
plot text html latex example
seqMatcherAlign text html latex example
sharedBy text html latex example
sharedInt text html latex example
siResult-class text html latex example
test2Interact text html latex example
topInteraction text html latex example
twoWayTable text html latex example
withinComplex text html latex example
** building package indices ...
* DONE (SLGI)
* creating vignettes ... OK
* removing junk files
* checking for LF line-endings in source and make files
* checking for empty or unneeded directories
* building 'SLGI_1.0.0.tar.gz'