BioC 2.12: CHECK report for tigre on petty

* using log directory '/Users/biocbuild/bbs-2.12-bioc/meat/tigre.Rcheck'
* using R version 3.0.1 (2013-05-16)
* using platform: x86_64-apple-darwin10.8.0 (64-bit)
* using session charset: ASCII
* using option '--no-vignettes'
* checking for file 'tigre/DESCRIPTION' ... OK
* this is package 'tigre' version '1.14.1'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package 'tigre' can be installed ... [21s/22s] OK
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking compiled code ... OK
* checking sizes of PDF files under 'inst/doc' ... OK
* checking installed files from 'inst/doc' ... OK
* checking examples ... [17s/18s] OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

* installing *source* package 'tigre' ...
** libs
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include    -fPIC  -mtune=core2 -g -O2  -c miscCFunctions.c -o miscCFunctions.o
llvm-gcc-4.2 -arch x86_64 -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -L/usr/local/lib -o tigre.so miscCFunctions.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-2.12-bioc/meat/tigre.Rcheck/tigre/libs
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (tigre)

name	user	system	elapsed
ExpressionTimeSeries-class	0.008	0.002	0.010
GPLearn	3.654	0.156	3.955
GPModel-class	0.039	0.002	0.041
GPPlot	0.071	0.002	0.073
GPRankTargets	0.053	0.002	0.057
SCGoptim	0.036	0.002	0.039
expTransform	0.040	0.002	0.042
export	0.085	0.002	0.088
generateModels	0.057	0.003	0.060
gpsimCreate	0.016	0.001	0.017
kernCompute	0.053	0.001	0.055
kernCreate	0.075	0.003	0.078
kernDiagGradX	0.036	0.001	0.037
kernGradient	0.036	0.001	0.036
lnDiffErfs	0.033	0.001	0.034
modelDisplay	0.694	0.010	0.705
modelExpandParam	0.050	0.003	0.052
modelExtractParam	0.409	0.010	0.441
modelGradient	0.566	0.015	0.616
modelTieParam	0.059	0.004	0.071
optimiDefaultConstraint	0.031	0.001	0.033
plotTimeseries	0.402	0.020	0.466
processData	0.836	0.026	0.920
scoreList-class	0.060	0.005	0.067
tigre-package	0.064	0.004	0.071

BioC 2.12: CHECK report for tigre on petty

Summary

Command output