BioC 2.12: CHECK report for tigre on george2

* using log directory ‘/home/biocbuild/bbs-2.12-bioc/meat/tigre.Rcheck’
* using R version 3.0.1 (2013-05-16)
* using platform: x86_64-unknown-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘tigre/DESCRIPTION’ ... OK
* this is package ‘tigre’ version ‘1.14.1’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘tigre’ can be installed ... [22s/24s] OK
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking compiled code ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking examples ... [19s/20s] OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

* installing *source* package ‘tigre’ ...
** libs
gcc -std=gnu99 -I/home/biocbuild/bbs-2.12-bioc/R/include -DNDEBUG  -I/usr/local/include    -fpic  -g -O2  -Wall -c miscCFunctions.c -o miscCFunctions.o
gcc -std=gnu99 -shared -L/usr/local/lib -o tigre.so miscCFunctions.o -L/home/biocbuild/bbs-2.12-bioc/R/lib -lR
installing to /home/biocbuild/bbs-2.12-bioc/meat/tigre.Rcheck/tigre/libs
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (tigre)

name	user	system	elapsed
ExpressionTimeSeries-class	0.016	0.004	0.018
GPLearn	3.768	0.080	4.362
GPModel-class	0.072	0.000	0.072
GPPlot	0.128	0.004	0.149
GPRankTargets	0.500	0.000	0.561
SCGoptim	0.048	0.012	0.079
expTransform	0.060	0.004	0.084
export	0.112	0.008	0.137
generateModels	0.092	0.008	0.114
gpsimCreate	0.024	0.004	0.031
kernCompute	0.064	0.000	0.064
kernCreate	0.096	0.012	0.109
kernDiagGradX	0.028	0.000	0.031
kernGradient	0.056	0.000	0.063
lnDiffErfs	0.032	0.000	0.055
modelDisplay	0.520	0.000	0.531
modelExpandParam	0.084	0.004	0.088
modelExtractParam	0.504	0.016	0.571
modelGradient	0.676	0.004	0.697
modelTieParam	0.097	0.000	0.096
optimiDefaultConstraint	0.056	0.000	0.056
plotTimeseries	0.808	0.012	0.855
processData	0.716	0.024	0.761
scoreList-class	0.092	0.004	0.098
tigre-package	0.092	0.004	0.096

BioC 2.12: CHECK report for tigre on george2

Summary

Command output