Package: imageHTS

Version: 1.9.1

Command: E:\biocbld\bbs-2.12-bioc\R\bin\R.exe --arch i386 CMD check --no-multiarch --no-vignettes --timings imageHTS_1.9.1.tar.gz

StartedAt: 2013-03-25 03:06:23 -0700 (Mon, 25 Mar 2013)

EndedAt: 2013-03-25 03:10:48 -0700 (Mon, 25 Mar 2013)

EllapsedTime: 265.5 seconds

RetCode: 0

Status:  OK

CheckDir: imageHTS.Rcheck

Warnings: 0

* using log directory 'E:/biocbld/bbs-2.12-bioc/meat/imageHTS.Rcheck'
* using R version 3.0.0 beta (2013-03-19 r62328)
* using platform: i386-w64-mingw32 (32-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'imageHTS/DESCRIPTION' ... OK
* this is package 'imageHTS' version '1.9.1'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... NOTE
Found the following hidden files and directories:
  .BBSoptions
These were most likely included in error. See section 'Package
structure' in the 'Writing R Extensions' manual.
* checking for portable file names ... OK
* checking whether package 'imageHTS' can be installed ... [20s] OK
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from 'inst/doc' ... OK
* checking examples ... [101s] OK
Examples with CPU or elapsed time > 5s
                 user system elapsed
extractFeatures 32.79   1.92   34.73
countObjects    14.72   0.80   16.10
segmentWells     8.97   0.44    9.41
segmentYeastBF   4.74   0.34    5.08
fileHTS          3.70   0.01    5.44
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

NOTE: There was 1 note.
See
  'E:/biocbld/bbs-2.12-bioc/meat/imageHTS.Rcheck/00check.log'
for details.

* installing *source* package 'imageHTS' ...
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
   'imageHTS-introduction.Rnw' 
** testing if installed package can be loaded
* DONE (imageHTS)

name	user	system	elapsed
collectCellFeatures	0	0	0
countObjects	14.72	0.80	16.10
extractFeatures	32.79	1.92	34.73
fileHTS	3.70	0.01	5.44
getImageConf	1.73	0.00	1.73
getUnames	4.15	0.00	4.15
getWellFeatures	4.77	0.02	4.79
highlightSegmentation	0	0	0
installCellPicker	3.39	0.04	3.45
makeCellHTS	0	0	0
parseDCF	0.01	0.00	0.01
parseImageConf	1.81	0.00	1.81
popCellPicker	1.95	0.00	1.95
prw2uname	0	0	0
readLearnTS	0	0	0
segmentATH	0.00	0.02	0.02
segmentWells	8.97	0.44	9.41
segmentYeastBF	4.74	0.34	5.08
summarizeWells	0.02	0.00	0.02
zprime	3.74	0.01	3.76