Package: imageHTS

Version: 1.9.1

Command: /home/biocbuild/bbs-2.12-bioc/R/bin/R CMD check --no-vignettes --timings imageHTS_1.9.1.tar.gz

StartedAt: 2013-03-25 02:31:13 -0700 (Mon, 25 Mar 2013)

EndedAt: 2013-03-25 02:39:44 -0700 (Mon, 25 Mar 2013)

EllapsedTime: 511.9 seconds

RetCode: 0

Status:  OK

CheckDir: imageHTS.Rcheck

Warnings: 0

* using log directory ‘/home/biocbuild/bbs-2.12-bioc/meat/imageHTS.Rcheck’
* using R version 3.0.0 beta (2013-03-19 r62328)
* using platform: x86_64-unknown-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘imageHTS/DESCRIPTION’ ... OK
* this is package ‘imageHTS’ version ‘1.9.1’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... NOTE
Found the following hidden files and directories:
  .BBSoptions
These were most likely included in error. See section ‘Package
structure’ in the ‘Writing R Extensions’ manual.
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘imageHTS’ can be installed ... [33s/34s] OK
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking examples ... [192s/200s] OK
Examples with CPU or elapsed time > 5s
                  user system elapsed
extractFeatures 57.132  0.400  60.153
countObjects    44.767  0.528  46.125
segmentWells    18.253  0.020  18.956
segmentYeastBF  12.161  0.004  12.261
getWellFeatures  8.000  0.004   8.116
getUnames        7.049  0.012   7.680
zprime           6.012  0.000   6.015
fileHTS          5.832  0.048   8.083
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

NOTE: There was 1 note.
See
  ‘/home/biocbuild/bbs-2.12-bioc/meat/imageHTS.Rcheck/00check.log’
for details.

* installing *source* package ‘imageHTS’ ...
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
   ‘imageHTS-introduction.Rnw’ 
** testing if installed package can be loaded
* DONE (imageHTS)

name	user	system	elapsed
collectCellFeatures	0.012	0.000	0.012
countObjects	44.767	0.528	46.125
extractFeatures	57.132	0.400	60.153
fileHTS	5.832	0.048	8.083
getImageConf	3.152	0.020	3.433
getUnames	7.049	0.012	7.680
getWellFeatures	8.000	0.004	8.116
highlightSegmentation	0.004	0.000	0.005
installCellPicker	4.609	0.004	4.638
makeCellHTS	0.016	0.000	0.015
parseDCF	0.008	0.004	0.013
parseImageConf	3.192	0.000	3.195
popCellPicker	3.436	0.000	3.617
prw2uname	0.020	0.000	0.017
readLearnTS	0.000	0.004	0.004
segmentATH	0.004	0.000	0.003
segmentWells	18.253	0.020	18.956
segmentYeastBF	12.161	0.004	12.261
summarizeWells	0.604	0.000	0.606
zprime	6.012	0.000	6.015