Package: copa

Version: 1.2.0

Command: /loc/biocbuild/1.9d/R/bin/R CMD build copa

RetCode: 0

Time: 164.2 seconds

Status: OK

PackageFile: copa_1.2.0.tar.gz

* checking for file 'copa/DESCRIPTION' ... OK
* preparing 'copa':
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to re-build vignettes
* Installing *source* package 'copa' ...
** libs
gcc -I/loc/biocbuild/1.9d/R/include -I/loc/biocbuild/1.9d/R/include  -I/usr/local/include    -fpic  -g -O2 -std=gnu99 -Wall -c copa.c -o copa.o
gcc -shared -L/usr/local/lib64 -o copa.so copa.o   
** R
** inst
** preparing package for lazy loading
Loading required package: Biobase
Loading required package: tools

Welcome to Bioconductor

    Vignettes contain introductory material. To view, type
    'openVignette()' or start with 'help(Biobase)'. For details
    on reading vignettes, see the openVignette help page.

** help
 >>> Building/Updating help pages for package 'copa'
     Formats: text html latex example 
  copa                              text    html    latex   example
  copa.package                      text    html    latex
  copaFilter                        text    html    latex
  copaPerm                          text    html    latex
  copaTable                         text    html    latex   example
  getans                            text    html    latex
  pSum                              text    html    latex
  perm.mat                          text    html    latex
  plotCopa                          text    html    latex   example
  scatterPlotCopa                   text    html    latex   example
** building package indices ...
* DONE (copa)
* creating vignettes ... OK
* cleaning src
* removing junk files
* checking for LF line-endings in source files
* checking for empty or unneeded directories
* building 'copa_1.2.0.tar.gz'