Gavin Rhys Lloyd
| Snapshot Date: 2026-03-23 13:40 -0400 (Mon, 23 Mar 2026) |
| git_url: https://git.bioconductor.org/packages/structToolbox |
| git_branch: devel |
| git_last_commit: f3e9345 |
| git_last_commit_date: 2026-02-20 10:36:31 -0400 (Fri, 20 Feb 2026) |
| Back to Multiple platform build/check report for BioC 3.23: simplified long |
|
This page was generated on 2026-03-24 11:34 -0400 (Tue, 24 Mar 2026).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 24.04.3 LTS) | x86_64 | R Under development (unstable) (2026-03-05 r89546) -- "Unsuffered Consequences" | 4869 |
| kjohnson3 | macOS 13.7.7 Ventura | arm64 | R Under development (unstable) (2026-03-20 r89666) -- "Unsuffered Consequences" | 4567 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 2154/2368 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| structToolbox 1.23.1 (landing page) Gavin Rhys Lloyd
| nebbiolo1 | Linux (Ubuntu 24.04.3 LTS) / x86_64 | OK | ERROR | skipped | |||||||||
| kjohnson3 | macOS 13.7.7 Ventura / arm64 | OK | OK | OK | OK | | ||||||||
| See other builds for structToolbox in R Universe. | ||||||||||||||
|
To the developers/maintainers of the structToolbox package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/structToolbox.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: structToolbox |
| Version: 1.23.1 |
| Command: /home/biocbuild/bbs-3.23-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data structToolbox |
| StartedAt: 2026-03-23 20:29:17 -0400 (Mon, 23 Mar 2026) |
| EndedAt: 2026-03-23 20:30:08 -0400 (Mon, 23 Mar 2026) |
| EllapsedTime: 51.0 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
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### Running command:
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### /home/biocbuild/bbs-3.23-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data structToolbox
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* checking for file ‘structToolbox/DESCRIPTION’ ... OK
* preparing ‘structToolbox’:
* checking DESCRIPTION meta-information ... OK
* installing the package (it is needed to build vignettes)
* creating vignettes ... ERROR
--- re-building ‘data_analysis_omics_using_the_structtoolbox.Rmd’ using rmarkdown
Quitting from data_analysis_omics_using_the_structtoolbox.Rmd:251-253 [unnamed-chunk-20]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/httr2_http_503>
Error in `req_perform()`:
! HTTP 503 Service Unavailable.
---
Backtrace:
▆
1. ├─struct::ontology(P, cache = ontology_cache())
2. └─struct::ontology(P, cache = ontology_cache())
3. ├─BiocGenerics::lapply(...)
4. └─base::lapply(...)
5. └─struct (local) FUN(X[[i]], ...)
6. └─struct::ontology_list(cache[[x]])
7. ├─BiocGenerics::lapply(...)
8. └─base::lapply(...)
9. └─struct (local) FUN(X[[i]], ...)
10. └─struct::ontology_term(id = x)
11. ├─rols::olsOntology(ontology)
12. └─rols::olsOntology(ontology)
13. └─rols:::makeOlsOntology(url)
14. ├─rols:::ontologyFromJson(resp_body_json(req_perform(request(url))))
15. │ └─rols:::.olsOntology(...)
16. │ └─methods::new(`<chr>`, ...)
17. │ ├─methods::initialize(value, ...)
18. │ └─methods::initialize(value, ...)
19. ├─httr2::resp_body_json(req_perform(request(url)))
20. │ └─httr2:::check_response(resp)
21. │ └─httr2:::is_response(resp)
22. └─httr2::req_perform(request(url))
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'data_analysis_omics_using_the_structtoolbox.Rmd' failed with diagnostics:
HTTP 503 Service Unavailable.
--- failed re-building ‘data_analysis_omics_using_the_structtoolbox.Rmd’
SUMMARY: processing the following file failed:
‘data_analysis_omics_using_the_structtoolbox.Rmd’
Error: Vignette re-building failed.
Execution halted