Multiple platform build/check report for BioC 3.23 - BUILD results for struct on nebbiolo1

Hostname	OS	Arch (*)	R version	Installed pkgs
nebbiolo1	Linux (Ubuntu 24.04.3 LTS)	x86_64	R Under development (unstable) (2026-03-05 r89546) -- "Unsuffered Consequences"	4869
kjohnson3	macOS 13.7.7 Ventura	arm64	R Under development (unstable) (2026-03-20 r89666) -- "Unsuffered Consequences"	4567
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BUILD results for struct on nebbiolo1

To the developers/maintainers of the struct package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/struct.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results

Summary

Package: struct

Version: 1.23.1

Command: /home/biocbuild/bbs-3.23-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data struct

StartedAt: 2026-03-23 20:29:09 -0400 (Mon, 23 Mar 2026)

EndedAt: 2026-03-23 20:29:46 -0400 (Mon, 23 Mar 2026)

EllapsedTime: 37.0 seconds

RetCode: 1

Status: ERROR

PackageFile: None

PackageFileSize: NA

Command output

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### Running command:
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###   /home/biocbuild/bbs-3.23-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data struct
###
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* checking for file ‘struct/DESCRIPTION’ ... OK
* preparing ‘struct’:
* checking DESCRIPTION meta-information ... OK
* installing the package (it is needed to build vignettes)
* creating vignettes ... ERROR
--- re-building ‘struct_templates_and_helper_functions.Rmd’ using rmarkdown

Quitting from struct_templates_and_helper_functions.Rmd:670-682 [unnamed-chunk-27]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/httr2_http_503>
Error in `req_perform()`:
! HTTP 503 Service Unavailable.
---
Backtrace:
     ▆
  1. ├─struct::ontology(P)
  2. └─struct::ontology(P)
  3.   └─struct::ontology_list(ont)
  4.     ├─BiocGenerics::lapply(...)
  5.     └─base::lapply(...)
  6.       └─struct (local) FUN(X[[i]], ...)
  7.         └─struct::ontology_term(id = x)
  8.           ├─rols::olsOntology(ontology)
  9.           └─rols::olsOntology(ontology)
 10.             └─rols:::makeOlsOntology(url)
 11.               ├─rols:::ontologyFromJson(resp_body_json(req_perform(request(url))))
 12.               │ └─rols:::.olsOntology(...)
 13.               │   └─methods::new(`<chr>`, ...)
 14.               │     ├─methods::initialize(value, ...)
 15.               │     └─methods::initialize(value, ...)
 16.               ├─httr2::resp_body_json(req_perform(request(url)))
 17.               │ └─httr2:::check_response(resp)
 18.               │   └─httr2:::is_response(resp)
 19.               └─httr2::req_perform(request(url))
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'struct_templates_and_helper_functions.Rmd' failed with diagnostics:
HTTP 503 Service Unavailable.
--- failed re-building ‘struct_templates_and_helper_functions.Rmd’

SUMMARY: processing the following file failed:
  ‘struct_templates_and_helper_functions.Rmd’

Error: Vignette re-building failed.
Execution halted