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BioC experimental data: BUILD BIN report for RNAseqData.HNRNPC.bam.chr14 on windows2.bioconductor.org

This page was generated on 2015-10-24 19:25:53 -0400 (Sat, 24 Oct 2015).

Package 204/257HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
RNAseqData.HNRNPC.bam.chr14 0.9.0
H. Pages
Snapshot Date: 2015-10-24 10:15:05 -0400 (Sat, 24 Oct 2015)
URL: https://hedgehog.fhcrc.org/bioc-data/trunk/experiment/pkgs/RNAseqData.HNRNPC.bam.chr14
Last Changed Rev: 3462 / Revision: 3473
Last Changed Date: 2015-10-13 16:20:35 -0400 (Tue, 13 Oct 2015)
linux2.bioconductor.org Linux (Ubuntu 14.04.2 LTS) / x86_64  NotNeeded  OK  OK UNNEEDED, same version exists in internal repository
windows2.bioconductor.org Windows Server 2012 R2 Enterprise SP1 (64-bit) / x64  NotNeeded  OK  OK [ OK ]
morelia Mac OS X Mavericks (10.9.5) / x86_64  NotNeeded  OK  OK  OK 

Summary

Package: RNAseqData.HNRNPC.bam.chr14
Version: 0.9.0
Command: cd RNAseqData.HNRNPC.bam.chr14.buildbin-libdir/RNAseqData.HNRNPC.bam.chr14 && zip -r ../../RNAseqData.HNRNPC.bam.chr14_0.9.0.zip . & cd ../..
StartedAt: 2015-10-24 13:37:06 -0400 (Sat, 24 Oct 2015)
EndedAt: 2015-10-24 13:38:45 -0400 (Sat, 24 Oct 2015)
EllapsedTime: 99.2 seconds
RetCode: 0
Status:  OK  
PackageFile: RNAseqData.HNRNPC.bam.chr14_0.9.0.zip
PackageFileSize: 665.5 MiB

Command output

##############################################################################
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###
### Running command:
###
###   cd RNAseqData.HNRNPC.bam.chr14.buildbin-libdir/RNAseqData.HNRNPC.bam.chr14 && zip -r ../../RNAseqData.HNRNPC.bam.chr14_0.9.0.zip . & cd ../..
###
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##############################################################################


Scanning files 
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  adding: extdata/tophat2_out/ERR127308/logs/reports.samtools_sort.log0 (188 bytes security) (stored 0%)
  adding: extdata/tophat2_out/ERR127308/logs/reports.samtools_sort.log1 (188 bytes security) (stored 0%)
  adding: extdata/tophat2_out/ERR127308/logs/run.log (188 bytes security) (deflated 92%)
  adding: extdata/tophat2_out/ERR127308/logs/segment_juncs.log (188 bytes security) (deflated 84%)
  adding: extdata/tophat2_out/ERR127308/logs/tophat.log (188 bytes security) (deflated 71%)
  adding: extdata/tophat2_out/ERR127308/prep_reads.info (188 bytes security) (deflated 55%)
  adding: extdata/tophat2_out/ERR127309/ (256 bytes security) (stored 0%)
  adding: extdata/tophat2_out/ERR127309/deletions.bed (188 bytes security) (deflated 77%)
  adding: extdata/tophat2_out/ERR127309/insertions.bed (188 bytes security) (deflated 75%)
  adding: extdata/tophat2_out/ERR127309/junctions.bed (188 bytes security) (deflated 75%)
  adding: extdata/tophat2_out/ERR127309/logs/ (256 bytes security) (stored 0%)
  adding: extdata/tophat2_out/ERR127309/logs/bam_merge_um.log (188 bytes security) (stored 0%)
  adding: extdata/tophat2_out/ERR127309/logs/bowtie.left_kept_reads.log (188 bytes security) (deflated 35%)
  adding: extdata/tophat2_out/ERR127309/logs/bowtie.left_kept_reads_seg1.log (188 bytes security) (deflated 35%)
  adding: extdata/tophat2_out/ERR127309/logs/bowtie.left_kept_reads_seg2.log (188 bytes security) (deflated 35%)
  adding: extdata/tophat2_out/ERR127309/logs/bowtie.left_kept_reads_seg3.log (188 bytes security) (deflated 34%)
  adding: extdata/tophat2_out/ERR127309/logs/bowtie.right_kept_reads.log (188 bytes security) (deflated 35%)
  adding: extdata/tophat2_out/ERR127309/logs/bowtie.right_kept_reads_seg1.log (188 bytes security) (deflated 37%)
  adding: extdata/tophat2_out/ERR127309/logs/bowtie.right_kept_reads_seg2.log (188 bytes security) (deflated 34%)
  adding: extdata/tophat2_out/ERR127309/logs/bowtie.right_kept_reads_seg3.log (188 bytes security) (deflated 34%)
  adding: extdata/tophat2_out/ERR127309/logs/bowtie_build.log (188 bytes security) (deflated 84%)
  adding: extdata/tophat2_out/ERR127309/logs/juncs_db.log (188 bytes security) (deflated 86%)
  adding: extdata/tophat2_out/ERR127309/logs/long_spanning_reads.segs.log (188 bytes security) (deflated 48%)
  adding: extdata/tophat2_out/ERR127309/logs/prep_reads.log (188 bytes security) (deflated 43%)
  adding: extdata/tophat2_out/ERR127309/logs/reports.log (188 bytes security) (deflated 82%)
  adding: extdata/tophat2_out/ERR127309/logs/reports.merge_bam.log (188 bytes security) (stored 0%)
  adding: extdata/tophat2_out/ERR127309/logs/reports.samtools_sort.log0 (188 bytes security) (stored 0%)
  adding: extdata/tophat2_out/ERR127309/logs/reports.samtools_sort.log1 (188 bytes security) (stored 0%)
  adding: extdata/tophat2_out/ERR127309/logs/run.log (188 bytes security) (deflated 92%)
  adding: extdata/tophat2_out/ERR127309/logs/segment_juncs.log (188 bytes security) (deflated 84%)
  adding: extdata/tophat2_out/ERR127309/logs/tophat.log (188 bytes security) (deflated 71%)
  adding: extdata/tophat2_out/ERR127309/prep_reads.info (188 bytes security) (deflated 55%)
  adding: help/ (256 bytes security) (stored 0%)
  adding: help/aliases.rds (188 bytes security) (stored 0%)
  adding: help/AnIndex (188 bytes security) (deflated 76%)
  adding: help/paths.rds (188 bytes security) (stored 0%)
  adding: help/RNAseqData.HNRNPC.bam.chr14.rdb (188 bytes security) (stored 0%)
  adding: help/RNAseqData.HNRNPC.bam.chr14.rdx (188 bytes security) (stored 0%)
  adding: html/ (256 bytes security) (stored 0%)
  adding: html/00Index.html (188 bytes security) (deflated 71%)
  adding: html/R.css (188 bytes security) (deflated 75%)
  adding: INDEX (188 bytes security) (deflated 44%)
  adding: MD5 (188 bytes security) (deflated 74%)
  adding: Meta/ (256 bytes security) (stored 0%)
  adding: Meta/hsearch.rds (188 bytes security) (stored 0%)
  adding: Meta/links.rds (188 bytes security) (stored 0%)
  adding: Meta/nsInfo.rds (188 bytes security) (stored 0%)
  adding: Meta/package.rds (188 bytes security) (stored 0%)
  adding: Meta/Rd.rds (188 bytes security) (stored 0%)
  adding: NAMESPACE (188 bytes security) (deflated 33%)
  adding: R/ (256 bytes security) (stored 0%)
  adding: R/RNAseqData.HNRNPC.bam.chr14 (188 bytes security) (deflated 41%)
  adding: R/RNAseqData.HNRNPC.bam.chr14.rdb (188 bytes security) (deflated 22%)
  adding: R/RNAseqData.HNRNPC.bam.chr14.rdx (188 bytes security) (stored 0%)
  adding: scripts/ (256 bytes security) (stored 0%)
  adding: scripts/download-fastq.sh (188 bytes security) (deflated 43%)
  adding: scripts/hg19_seqnames.txt (188 bytes security) (deflated 76%)
  adding: scripts/README.TXT (188 bytes security) (deflated 61%)
  adding: scripts/start-tophat2-on-all-runs.sh (188 bytes security) (deflated 79%)
  adding: scripts/subset_bam_chr14.R (188 bytes security) (deflated 52%)