BioC experimental data: CHECK report for GSBenchMark on moscato2

Package: GSBenchMark

Version: 0.106.0

Command: rm -rf GSBenchMark.buildbin-libdir GSBenchMark.Rcheck && mkdir GSBenchMark.buildbin-libdir GSBenchMark.Rcheck && E:\biocbld\bbs-3.3-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=GSBenchMark.buildbin-libdir GSBenchMark_0.106.0.tar.gz >GSBenchMark.Rcheck\00install.out 2>&1 && cp GSBenchMark.Rcheck\00install.out GSBenchMark-install.out && E:\biocbld\bbs-3.3-bioc\R\bin\R.exe CMD check --library=GSBenchMark.buildbin-libdir --install="check:GSBenchMark-install.out" --force-multiarch --no-vignettes --timings GSBenchMark_0.106.0.tar.gz

StartedAt: 2016-10-08 12:20:39 -0700 (Sat, 08 Oct 2016)

EndedAt: 2016-10-08 12:22:07 -0700 (Sat, 08 Oct 2016)

EllapsedTime: 88.6 seconds

RetCode: 0

Status:  OK

CheckDir: GSBenchMark.Rcheck

Warnings: 0

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### Running command:
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###   rm -rf GSBenchMark.buildbin-libdir GSBenchMark.Rcheck && mkdir GSBenchMark.buildbin-libdir GSBenchMark.Rcheck && E:\biocbld\bbs-3.3-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=GSBenchMark.buildbin-libdir GSBenchMark_0.106.0.tar.gz >GSBenchMark.Rcheck\00install.out 2>&1 && cp GSBenchMark.Rcheck\00install.out GSBenchMark-install.out  && E:\biocbld\bbs-3.3-bioc\R\bin\R.exe CMD check --library=GSBenchMark.buildbin-libdir --install="check:GSBenchMark-install.out" --force-multiarch --no-vignettes --timings GSBenchMark_0.106.0.tar.gz
###
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* using log directory 'E:/biocbld/bbs-3.3-data-experiment/meat/GSBenchMark.Rcheck'
* using R version 3.3.1 (2016-06-21)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'GSBenchMark/DESCRIPTION' ... OK
* this is package 'GSBenchMark' version '0.106.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'GSBenchMark' can be installed ... OK
* checking installed package size ... NOTE
  installed size is 42.0Mb
  sub-directories of 1Mb or more:
    data  41.8Mb
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
** running examples for arch 'x64' ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 1 NOTE
See
  'E:/biocbld/bbs-3.3-data-experiment/meat/GSBenchMark.Rcheck/00check.log'
for details.

install for i386

* installing *source* package 'GSBenchMark' ...
** data
** inst
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded

install for x64

* installing *source* package 'GSBenchMark' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'GSBenchMark' as GSBenchMark_0.106.0.zip
* DONE (GSBenchMark)

name	user	system	elapsed
GSBenchMarkDatasets	0.36	0.03	0.39
bipolar_GDS2190	0.28	0.02	0.30
breast_GDS807	0.28	0.03	0.31
diracpathways	0.00	0.03	0.03
exprsdata	0.44	0.02	0.45
leukemia_GSEA	0.28	0.01	0.30
logexprsdata	0.47	0.00	0.47
marfan_GDS2960	0.14	0.03	0.17
melanoma_GDS2735	0.42	0.00	0.42
parkinsons_GDS2519	0.63	0.02	0.64
phenotypes	0.44	0.01	0.45
prostate_GDS2545_m_nf	0.26	0.00	0.27
prostate_GDS2545_m_p	0.53	0.00	0.53
prostate_GDS2545_p_nf	0.46	0.02	0.47
sarcoma_data	0.79	0.01	0.81
squamous_GDS2520	0.31	0.00	0.31

name	user	system	elapsed
GSBenchMarkDatasets	0.49	0.00	0.48
bipolar_GDS2190	0.28	0.01	0.30
breast_GDS807	0.28	0.00	0.28
diracpathways	0.00	0.03	0.03
exprsdata	0.39	0.02	0.41
leukemia_GSEA	0.27	0.01	0.28
logexprsdata	0.39	0.02	0.41
marfan_GDS2960	0.14	0.00	0.14
melanoma_GDS2735	0.34	0.05	0.39
parkinsons_GDS2519	0.58	0.03	0.60
phenotypes	0.40	0.01	0.43
prostate_GDS2545_m_nf	0.25	0.00	0.24
prostate_GDS2545_m_p	0.45	0.02	0.47
prostate_GDS2545_p_nf	0.39	0.00	0.39
sarcoma_data	0.67	0.05	0.72
squamous_GDS2520	0.25	0.01	0.27