BioC experimental data: CHECK report for FANTOM3and4CAGE on windows2.bioconductor.org

Package: FANTOM3and4CAGE

Version: 1.7.0

Command: rm -rf FANTOM3and4CAGE.buildbin-libdir FANTOM3and4CAGE.Rcheck && mkdir FANTOM3and4CAGE.buildbin-libdir FANTOM3and4CAGE.Rcheck && c:\biocbld\bbs-3.3-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=FANTOM3and4CAGE.buildbin-libdir FANTOM3and4CAGE_1.7.0.tar.gz >FANTOM3and4CAGE.Rcheck\00install.out 2>&1 && cp FANTOM3and4CAGE.Rcheck\00install.out FANTOM3and4CAGE-install.out && c:\biocbld\bbs-3.3-bioc\R\bin\R.exe CMD check --library=FANTOM3and4CAGE.buildbin-libdir --install="check:FANTOM3and4CAGE-install.out" --force-multiarch --no-vignettes --timings FANTOM3and4CAGE_1.7.0.tar.gz

StartedAt: 2015-10-24 12:12:11 -0400 (Sat, 24 Oct 2015)

EndedAt: 2015-10-24 12:13:21 -0400 (Sat, 24 Oct 2015)

EllapsedTime: 69.2 seconds

RetCode: 0

Status:  OK

CheckDir: FANTOM3and4CAGE.Rcheck

Warnings: 0

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### Running command:
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###   rm -rf FANTOM3and4CAGE.buildbin-libdir FANTOM3and4CAGE.Rcheck && mkdir FANTOM3and4CAGE.buildbin-libdir FANTOM3and4CAGE.Rcheck && c:\biocbld\bbs-3.3-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=FANTOM3and4CAGE.buildbin-libdir FANTOM3and4CAGE_1.7.0.tar.gz >FANTOM3and4CAGE.Rcheck\00install.out 2>&1 && cp FANTOM3and4CAGE.Rcheck\00install.out FANTOM3and4CAGE-install.out  && c:\biocbld\bbs-3.3-bioc\R\bin\R.exe CMD check --library=FANTOM3and4CAGE.buildbin-libdir --install="check:FANTOM3and4CAGE-install.out" --force-multiarch --no-vignettes --timings FANTOM3and4CAGE_1.7.0.tar.gz
###
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* using log directory 'c:/biocbld/bbs-3.3-data-experiment/meat/FANTOM3and4CAGE.Rcheck'
* using R Under development (unstable) (2015-09-22 r69418)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'FANTOM3and4CAGE/DESCRIPTION' ... OK
* this is package 'FANTOM3and4CAGE' version '1.7.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'FANTOM3and4CAGE' can be installed ... OK
* checking installed package size ... NOTE
  installed size is 34.6Mb
  sub-directories of 1Mb or more:
    data  34.3Mb
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... [19s] OK
Examples with CPU or elapsed time > 5s
                      user system elapsed
FANTOMtissueCAGEhuman 9.75   0.22    9.97
** running examples for arch 'x64' ... [16s] OK
Examples with CPU or elapsed time > 5s
                      user system elapsed
FANTOMtissueCAGEhuman  7.8    0.2       8
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 1 NOTE
See
  'c:/biocbld/bbs-3.3-data-experiment/meat/FANTOM3and4CAGE.Rcheck/00check.log'
for details.

install for i386

* installing *source* package 'FANTOM3and4CAGE' ...
** data
** inst
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded

install for x64

* installing *source* package 'FANTOM3and4CAGE' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'FANTOM3and4CAGE' as FANTOM3and4CAGE_1.7.0.zip
* DONE (FANTOM3and4CAGE)

name	user	system	elapsed
FANTOMhumanSamples	0.03	0.00	0.03
FANTOMmouseSamples	0	0	0
FANTOMtimecourseCAGEhuman	4.54	0.08	4.63
FANTOMtimecourseCAGEmouse	0.33	0.00	0.33
FANTOMtissueCAGEhuman	9.75	0.22	9.97
FANTOMtissueCAGEmouse	3.86	0.08	3.93

name	user	system	elapsed
FANTOMhumanSamples	0.04	0.00	0.04
FANTOMmouseSamples	0	0	0
FANTOMtimecourseCAGEhuman	3.61	0.14	3.75
FANTOMtimecourseCAGEmouse	0.22	0.05	0.27
FANTOMtissueCAGEhuman	7.8	0.2	8.0
FANTOMtissueCAGEmouse	3.11	0.13	3.23