| Back to Build/check report for BioC 3.21 experimental data |
|
This page was generated on 2025-10-16 15:01 -0400 (Thu, 16 Oct 2025).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 24.04.3 LTS) | x86_64 | 4.5.1 (2025-06-13) -- "Great Square Root" | 4833 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 284/432 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | ||||||||
| optimalFlowData 1.20.0 (landing page) Hristo Inouzhe
| nebbiolo1 | Linux (Ubuntu 24.04.3 LTS) / x86_64 | OK | OK | WARNINGS | ||||||||
|
To the developers/maintainers of the optimalFlowData package: - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: optimalFlowData |
| Version: 1.20.0 |
| Command: /home/biocbuild/bbs-3.21-bioc/R/bin/R CMD check --install=check:optimalFlowData.install-out.txt --library=/home/biocbuild/bbs-3.21-bioc/R/site-library --timings optimalFlowData_1.20.0.tar.gz |
| StartedAt: 2025-10-16 12:43:33 -0400 (Thu, 16 Oct 2025) |
| EndedAt: 2025-10-16 12:44:34 -0400 (Thu, 16 Oct 2025) |
| EllapsedTime: 60.6 seconds |
| RetCode: 0 |
| Status: WARNINGS |
| CheckDir: optimalFlowData.Rcheck |
| Warnings: 1 |
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### Running command:
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### /home/biocbuild/bbs-3.21-bioc/R/bin/R CMD check --install=check:optimalFlowData.install-out.txt --library=/home/biocbuild/bbs-3.21-bioc/R/site-library --timings optimalFlowData_1.20.0.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.21-data-experiment/meat/optimalFlowData.Rcheck’
* using R version 4.5.1 (2025-06-13)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
gcc (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
GNU Fortran (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
* running under: Ubuntu 24.04.3 LTS
* using session charset: UTF-8
* checking for file ‘optimalFlowData/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘optimalFlowData’ version ‘1.20.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘optimalFlowData’ can be installed ... OK
* checking installed package size ... INFO
installed size is 97.4Mb
sub-directories of 1Mb or more:
data 97.2Mb
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking LazyData ... WARNING
LazyData DB of 97.2 MB without LazyDataCompression set
See §1.1.6 of 'Writing R Extensions'
* checking data for ASCII and uncompressed saves ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... OK
* DONE
Status: 1 WARNING
See
‘/home/biocbuild/bbs-3.21-data-experiment/meat/optimalFlowData.Rcheck/00check.log’
for details.
optimalFlowData.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.21-bioc/R/bin/R CMD INSTALL optimalFlowData ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.21-bioc/R/site-library’ * installing *source* package ‘optimalFlowData’ ... ** this is package ‘optimalFlowData’ version ‘1.20.0’ ** using staged installation ** R ** data *** moving datasets to lazyload DB ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (optimalFlowData)
optimalFlowData.Rcheck/optimalFlowData-Ex.timings
| name | user | system | elapsed | |
| Cytometry1 | 0.027 | 0.011 | 0.040 | |
| Cytometry10 | 0.017 | 0.010 | 0.027 | |
| Cytometry11 | 0.018 | 0.009 | 0.028 | |
| Cytometry12 | 0.016 | 0.011 | 0.029 | |
| Cytometry13 | 0.019 | 0.009 | 0.028 | |
| Cytometry14 | 0.033 | 0.005 | 0.038 | |
| Cytometry15 | 0.013 | 0.003 | 0.016 | |
| Cytometry16 | 0.010 | 0.006 | 0.015 | |
| Cytometry17 | 0.054 | 0.008 | 0.064 | |
| Cytometry18 | 0.040 | 0.015 | 0.055 | |
| Cytometry19 | 0.023 | 0.002 | 0.025 | |
| Cytometry2 | 0.054 | 0.006 | 0.060 | |
| Cytometry20 | 0.038 | 0.003 | 0.040 | |
| Cytometry21 | 0.048 | 0.004 | 0.051 | |
| Cytometry22 | 0.021 | 0.003 | 0.023 | |
| Cytometry23 | 0.023 | 0.006 | 0.029 | |
| Cytometry24 | 0.020 | 0.008 | 0.029 | |
| Cytometry25 | 0.021 | 0.006 | 0.029 | |
| Cytometry26 | 0.021 | 0.004 | 0.025 | |
| Cytometry27 | 0.059 | 0.011 | 0.069 | |
| Cytometry28 | 0.089 | 0.020 | 0.109 | |
| Cytometry29 | 0.052 | 0.017 | 0.068 | |
| Cytometry3 | 0.012 | 0.001 | 0.012 | |
| Cytometry30 | 0.045 | 0.004 | 0.048 | |
| Cytometry31 | 0.047 | 0.004 | 0.051 | |
| Cytometry32 | 0.049 | 0.003 | 0.051 | |
| Cytometry33 | 0.056 | 0.000 | 0.057 | |
| Cytometry34 | 0.059 | 0.004 | 0.063 | |
| Cytometry35 | 0.043 | 0.002 | 0.045 | |
| Cytometry36 | 0.012 | 0.000 | 0.012 | |
| Cytometry37 | 0.012 | 0.001 | 0.012 | |
| Cytometry38 | 0.010 | 0.002 | 0.012 | |
| Cytometry39 | 0.012 | 0.001 | 0.013 | |
| Cytometry4 | 0.011 | 0.001 | 0.012 | |
| Cytometry40 | 0.03 | 0.00 | 0.03 | |
| Cytometry5 | 0.012 | 0.000 | 0.012 | |
| Cytometry6 | 0.012 | 0.000 | 0.012 | |
| Cytometry7 | 0.014 | 0.000 | 0.014 | |
| Cytometry8 | 0.011 | 0.001 | 0.012 | |
| Cytometry9 | 0.019 | 0.001 | 0.021 | |
| buildDatabase | 0.464 | 0.046 | 0.510 | |
| cytometry.diagnosis | 0.002 | 0.000 | 0.003 | |
| noise.types | 0.001 | 0.000 | 0.002 | |