Back to Workflows build report for BioC 3.22 |
This page was generated on 2025-06-20 16:30 -0400 (Fri, 20 Jun 2025).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
nebbiolo2 | Linux (Ubuntu 24.04.2 LTS) | x86_64 | 4.5.1 (2025-06-13) -- "Great Square Root" | 4562 |
palomino8 | Windows Server 2022 Datacenter | x64 | 4.5.1 (2025-06-13 ucrt) -- "Great Square Root" | 4400 |
lconway | macOS 12.7.1 Monterey | x86_64 | 4.5.1 (2025-06-13) -- "Great Square Root" | 1454 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
Package 27/29 | Hostname | OS / Arch | INSTALL | BUILD | ||||||||
spicyWorkflow 1.9.0 (landing page) SOMS Maintainer
| nebbiolo2 | Linux (Ubuntu 24.04.2 LTS) / x86_64 | OK | ERROR | ||||||||
palomino8 | Windows Server 2022 Datacenter / x64 | OK | ERROR | |||||||||
lconway | macOS 12.7.1 Monterey / x86_64 | OK | OK | |||||||||
To the developers/maintainers of the spicyWorkflow package: - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
Package: spicyWorkflow |
Version: 1.9.0 |
Command: /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data spicyWorkflow |
StartedAt: 2025-06-20 13:09:58 -0400 (Fri, 20 Jun 2025) |
EndedAt: 2025-06-20 13:39:57 -0400 (Fri, 20 Jun 2025) |
EllapsedTime: 1798.4 seconds |
RetCode: 1 |
Status: ERROR |
PackageFile: None |
PackageFileSize: NA |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data spicyWorkflow ### ############################################################################## ############################################################################## * checking for file ‘spicyWorkflow/DESCRIPTION’ ... OK * preparing ‘spicyWorkflow’: * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘spicyWorkflow.Rmd’ using rmarkdown Quitting from spicyWorkflow.Rmd:774-791 [unnamed-chunk-40] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ <error/rlang_error> Error in `rowMeans()`: ! 'x' must be an array of at least two dimensions --- Backtrace: ▆ 1. └─treekoR::getClusterTree(...) 2. └─treekoR::runHOPACH(...) 3. └─hopach::hopach(data, K = K, dmat = dist, kmax = kmax) 4. └─hopach::mssrundown(...) 5. └─hopach::mssnextlevel(...) 6. └─base::rowMeans(dmat[labels == ordlabels[j], labels == labels[medoid2]]) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'spicyWorkflow.Rmd' failed with diagnostics: 'x' must be an array of at least two dimensions --- failed re-building ‘spicyWorkflow.Rmd’ SUMMARY: processing the following file failed: ‘spicyWorkflow.Rmd’ Error: Vignette re-building failed. Execution halted