| Back to Workflows build report for BioC 3.23 |
This page was generated on 2025-11-25 16:30 -0500 (Tue, 25 Nov 2025).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 24.04.3 LTS) | x86_64 | R Under development (unstable) (2025-10-20 r88955) -- "Unsuffered Consequences" | 4830 |
| lconway | macOS 12.7.6 Monterey | x86_64 | R Under development (unstable) (2025-10-21 r88958) -- "Unsuffered Consequences" | 4606 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 16/28 | Hostname | OS / Arch | INSTALL | BUILD | ||||||||
| maEndToEnd 2.31.0 (landing page) Stefanie Reisenauer
| nebbiolo1 | Linux (Ubuntu 24.04.3 LTS) / x86_64 | OK | ERROR | ||||||||
| lconway | macOS 12.7.6 Monterey / x86_64 | OK | ERROR | |||||||||
|
To the developers/maintainers of the maEndToEnd package: - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: maEndToEnd |
| Version: 2.31.0 |
| Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data maEndToEnd |
| StartedAt: 2025-11-25 13:04:16 -0500 (Tue, 25 Nov 2025) |
| EndedAt: 2025-11-25 13:15:44 -0500 (Tue, 25 Nov 2025) |
| EllapsedTime: 688.0 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
##############################################################################
##############################################################################
###
### Running command:
###
### /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data maEndToEnd
###
##############################################################################
##############################################################################
* checking for file ‘maEndToEnd/DESCRIPTION’ ... OK
* preparing ‘maEndToEnd’:
* checking DESCRIPTION meta-information ... OK
* installing the package (it is needed to build vignettes)
* creating vignettes ... ERROR
--- re-building ‘MA-Workflow.Rmd’ using rmarkdown
trying URL 'ftp://ftp.ebi.ac.uk/biostudies/fire/E-MTAB-/967/E-MTAB-2967/Files/2826_I.CEL'
Content type 'unknown' length 11172699 bytes (10.7 MB)
==================================================
trying URL 'ftp://ftp.ebi.ac.uk/biostudies/fire/E-MTAB-/967/E-MTAB-2967/Files/2995_I.CEL'
Content type 'unknown' length 11129827 bytes (10.6 MB)
==================================================
trying URL 'ftp://ftp.ebi.ac.uk/biostudies/fire/E-MTAB-/967/E-MTAB-2967/Files/3233_I.CEL'
Content type 'unknown' length 11132907 bytes (10.6 MB)
==================================================
trying URL 'ftp://ftp.ebi.ac.uk/biostudies/fire/E-MTAB-/967/E-MTAB-2967/Files/3259_II.CEL'
Content type 'unknown' length 11134395 bytes (10.6 MB)
==================================================
trying URL 'ftp://ftp.ebi.ac.uk/biostudies/fire/E-MTAB-/967/E-MTAB-2967/Files/3262_II.CEL'
trying URL 'ftp://ftp.ebi.ac.uk/biostudies/fire/E-MTAB-/967/E-MTAB-2967/Files/888_II.CEL'
Content type 'unknown' length 11138831 bytes (10.6 MB)
==================================================
trying URL 'https://www.ebi.ac.uk/biostudies/files/E-MTAB-2967/E-MTAB-2967.sdrf.txt'
Content type 'text/plain; charset=UTF-8' length 22516 bytes (21 KB)
==================================================
downloaded 21 KB
2025-11-25 13:15:42.762 R[8009:29437] XType: Using static font registry.
Quitting from MA-Workflow.Rmd:367-372 [importCelfiles]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error:
! These do not exist:
/Users/biocbuild/Library/Caches/org.R-project.R/R/maEndToEnd/3262_II.CEL
---
Backtrace:
▆
1. └─oligo::read.celfiles(...)
2. └─oligo:::checkValidFilenames(filenames)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'MA-Workflow.Rmd' failed with diagnostics:
These do not exist:
/Users/biocbuild/Library/Caches/org.R-project.R/R/maEndToEnd/3262_II.CEL
--- failed re-building ‘MA-Workflow.Rmd’
SUMMARY: processing the following file failed:
‘MA-Workflow.Rmd’
Error: Vignette re-building failed.
Execution halted