| Back to Build/check report for BioC 3.23 experimental data |
|
This page was generated on 2025-10-30 15:01 -0400 (Thu, 30 Oct 2025).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 24.04.3 LTS) | x86_64 | R Under development (unstable) (2025-10-20 r88955) -- "Unsuffered Consequences" | 4428 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 423/430 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | ||||||||
| xcoredata 1.15.0 (landing page) Maciej Migdał
| nebbiolo1 | Linux (Ubuntu 24.04.3 LTS) / x86_64 | OK | OK | ERROR | ||||||||
|
To the developers/maintainers of the xcoredata package: - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: xcoredata |
| Version: 1.15.0 |
| Command: /home/biocbuild/bbs-3.23-bioc/R/bin/R CMD check --install=check:xcoredata.install-out.txt --library=/home/biocbuild/bbs-3.23-bioc/R/site-library --timings xcoredata_1.15.0.tar.gz |
| StartedAt: 2025-10-30 12:57:51 -0400 (Thu, 30 Oct 2025) |
| EndedAt: 2025-10-30 12:57:59 -0400 (Thu, 30 Oct 2025) |
| EllapsedTime: 8.0 seconds |
| RetCode: 1 |
| Status: ERROR |
| CheckDir: xcoredata.Rcheck |
| Warnings: NA |
##############################################################################
##############################################################################
###
### Running command:
###
### /home/biocbuild/bbs-3.23-bioc/R/bin/R CMD check --install=check:xcoredata.install-out.txt --library=/home/biocbuild/bbs-3.23-bioc/R/site-library --timings xcoredata_1.15.0.tar.gz
###
##############################################################################
##############################################################################
* using log directory ‘/home/biocbuild/bbs-3.23-data-experiment/meat/xcoredata.Rcheck’
* using R Under development (unstable) (2025-10-20 r88955)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
gcc (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
GNU Fortran (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
* running under: Ubuntu 24.04.3 LTS
* using session charset: UTF-8
* checking for file ‘xcoredata/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘xcoredata’ version ‘1.15.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... ERROR
Package suggested but not available: ‘TxDb.Hsapiens.UCSC.hg38.knownGene’
The suggested packages are required for a complete check.
Checking can be attempted without them by setting the environment
variable _R_CHECK_FORCE_SUGGESTS_ to a false value.
See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
* DONE
Status: 1 ERROR
See
‘/home/biocbuild/bbs-3.23-data-experiment/meat/xcoredata.Rcheck/00check.log’
for details.