Build/check report for BioC 3.22 experimental data - BUILD results for Single.mTEC.Transcriptomes on nebbiolo2

Hostname	OS	Arch (*)	R version	Installed pkgs
nebbiolo2	Linux (Ubuntu 24.04.3 LTS)	x86_64	4.5.1 Patched (2025-08-23 r88802) -- "Great Square Root"	4727
Click on any hostname to see more info about the system (e.g. compilers) () as reported by 'uname -p', except on Windows and Mac OS X*

BUILD results for Single.mTEC.Transcriptomes on nebbiolo2

To the developers/maintainers of the Single.mTEC.Transcriptomes package:
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results

Summary

Package: Single.mTEC.Transcriptomes

Version: 1.37.1

Command: /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data Single.mTEC.Transcriptomes

StartedAt: 2025-09-16 11:42:58 -0400 (Tue, 16 Sep 2025)

EndedAt: 2025-09-16 11:46:54 -0400 (Tue, 16 Sep 2025)

EllapsedTime: 235.7 seconds

RetCode: 1

Status: ERROR

PackageFile: None

PackageFileSize: NA

Command output

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### Running command:
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###   /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data Single.mTEC.Transcriptomes
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* checking for file ‘Single.mTEC.Transcriptomes/DESCRIPTION’ ... OK
* preparing ‘Single.mTEC.Transcriptomes’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘mTECs.Rnw’ using knitr

Quitting from mTECs.Rnw:2628-2645 [Figure_Supp7_karyograms]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `validObject()`:
! invalid class "GGbio" object: invalid object for slot "ggplot" in class "GGbio": got class "ggplot2::ggplot", should be or extend class "gg_OR_NULL"
---
Backtrace:
     x
  1. +-ggplot2::autoplot(...)
  2. \-ggbio::autoplot(...)
  3.   \-ggbio (local) .local(object, ...)
  4.     \-ggbio::GGbio(p, data = object)
  5.       +-BiocGenerics::do.call(...)
  6.       +-base::do.call(...)
  7.       \-methods (local) `<fn>`(...)
  8.         +-methods::initialize(value, ...)
  9.         \-methods::initialize(value, ...)
 10.           \-methods::validObject(.Object)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'mTECs.Rnw' failed with diagnostics:
invalid class "GGbio" object: invalid object for slot "ggplot" in class "GGbio": got class "ggplot2::ggplot", should be or extend class "gg_OR_NULL"
--- failed re-building ‘mTECs.Rnw’

SUMMARY: processing the following file failed:
  ‘mTECs.Rnw’

Error: Vignette re-building failed.
Execution halted