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This page was generated on 2025-09-16 15:41 -0400 (Tue, 16 Sep 2025).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 24.04.3 LTS)x86_644.5.1 Patched (2025-08-23 r88802) -- "Great Square Root" 4727
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 308/432HostnameOS / ArchINSTALLBUILDCHECK
ProteinGymR 1.3.9  (landing page)
Tram Nguyen
Snapshot Date: 2025-09-16 07:30 -0400 (Tue, 16 Sep 2025)
git_url: https://git.bioconductor.org/packages/ProteinGymR
git_branch: devel
git_last_commit: b18ce51
git_last_commit_date: 2025-09-12 16:34:27 -0400 (Fri, 12 Sep 2025)
nebbiolo2Linux (Ubuntu 24.04.3 LTS) / x86_64  OK    ERROR  skipped

BUILD results for ProteinGymR on nebbiolo2

To the developers/maintainers of the ProteinGymR package:
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: ProteinGymR
Version: 1.3.9
Command: /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data ProteinGymR
StartedAt: 2025-09-16 11:36:33 -0400 (Tue, 16 Sep 2025)
EndedAt: 2025-09-16 11:40:30 -0400 (Tue, 16 Sep 2025)
EllapsedTime: 237.9 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

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### Running command:
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###   /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data ProteinGymR
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* checking for file ‘ProteinGymR/DESCRIPTION’ ... OK
* preparing ‘ProteinGymR’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘data_import_and_representation.Rmd’ using rmarkdown

Quitting from data_import_and_representation.Rmd:234-237 [unnamed-chunk-3]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
NULL
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Error: processing vignette 'data_import_and_representation.Rmd' failed with diagnostics:
Problem while converting geom to grob.
ℹ Error occurred in the 3rd layer.
Caused by error in `fun()`:
! argument "layout" is missing, with no default
--- failed re-building ‘data_import_and_representation.Rmd’

--- re-building ‘visualization_exploration.Rmd’ using rmarkdown
--- finished re-building ‘visualization_exploration.Rmd’

SUMMARY: processing the following file failed:
  ‘data_import_and_representation.Rmd’

Error: Vignette re-building failed.
Execution halted