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This page was generated on 2025-10-30 15:01 -0400 (Thu, 30 Oct 2025).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 24.04.3 LTS)x86_64R Under development (unstable) (2025-10-20 r88955) -- "Unsuffered Consequences" 4428
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 184/430HostnameOS / ArchINSTALLBUILDCHECK
HiBED 1.9.0  (landing page)
Ze Zhang
Snapshot Date: 2025-10-30 07:00 -0400 (Thu, 30 Oct 2025)
git_url: https://git.bioconductor.org/packages/HiBED
git_branch: devel
git_last_commit: 07e667d
git_last_commit_date: 2025-10-29 10:05:41 -0400 (Wed, 29 Oct 2025)
nebbiolo1Linux (Ubuntu 24.04.3 LTS) / x86_64  OK    ERROR  skipped

BUILD results for HiBED on nebbiolo1

To the developers/maintainers of the HiBED package:
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: HiBED
Version: 1.9.0
Command: /home/biocbuild/bbs-3.23-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data HiBED
StartedAt: 2025-10-30 11:21:23 -0400 (Thu, 30 Oct 2025)
EndedAt: 2025-10-30 11:22:26 -0400 (Thu, 30 Oct 2025)
EllapsedTime: 63.3 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
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###
### Running command:
###
###   /home/biocbuild/bbs-3.23-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data HiBED
###
##############################################################################
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* checking for file ‘HiBED/DESCRIPTION’ ... OK
* preparing ‘HiBED’:
* checking DESCRIPTION meta-information ... OK
* installing the package (it is needed to build vignettes)
* creating vignettes ... ERROR
--- re-building ‘HiBED.Rmd’ using rmarkdown

Quitting from HiBED.Rmd:50-70 [unnamed-chunk-3]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `getManifest()`:
! cannot load manifest package IlluminaHumanMethylation450kmanifest
---
Backtrace:
    ▆
 1. └─minfi::preprocessRaw(FlowSorted.DLPFC.450k)
 2.   └─minfi::getManifestInfo(rgSet, "locusNames")
 3.     └─minfi::getProbeInfo(object, type = "I")
 4.       ├─minfi::getManifest(object)
 5.       └─minfi::getManifest(object)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'HiBED.Rmd' failed with diagnostics:
cannot load manifest package IlluminaHumanMethylation450kmanifest
--- failed re-building ‘HiBED.Rmd’

SUMMARY: processing the following file failed:
  ‘HiBED.Rmd’

Error: Vignette re-building failed.
Execution halted