Build/check report for BioC 3.23 experimental data - BUILD results for ChimpHumanBrainData on nebbiolo1

Hostname	OS	Arch (*)	R version	Installed pkgs
nebbiolo1	Linux (Ubuntu 24.04.3 LTS)	x86_64	R Under development (unstable) (2025-10-20 r88955) -- "Unsuffered Consequences"	4428
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BUILD results for ChimpHumanBrainData on nebbiolo1

To the developers/maintainers of the ChimpHumanBrainData package:
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results

Summary

Package: ChimpHumanBrainData

Version: 1.49.0

Command: /home/biocbuild/bbs-3.23-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data ChimpHumanBrainData

StartedAt: 2025-10-30 11:09:16 -0400 (Thu, 30 Oct 2025)

EndedAt: 2025-10-30 11:09:31 -0400 (Thu, 30 Oct 2025)

EllapsedTime: 14.5 seconds

RetCode: 1

Status: ERROR

PackageFile: None

PackageFileSize: NA

Command output

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### Running command:
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###   /home/biocbuild/bbs-3.23-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data ChimpHumanBrainData
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* checking for file ‘ChimpHumanBrainData/DESCRIPTION’ ... OK
* preparing ‘ChimpHumanBrainData’:
* checking DESCRIPTION meta-information ... OK
* installing the package (it is needed to build vignettes)
* creating vignettes ... ERROR
--- re-building ‘DiffExpressVignette.Snw’ using Sweave
Loading required package: affy
Loading required package: BiocGenerics
Loading required package: generics

Attaching package: ‘generics’

The following objects are masked from ‘package:base’:

    as.difftime, as.factor, as.ordered, intersect, is.element, setdiff, setequal,
    union


Attaching package: ‘BiocGenerics’

The following objects are masked from ‘package:stats’:

    IQR, mad, sd, var, xtabs

The following objects are masked from ‘package:base’:

    Filter, Find, Map, Position, Reduce, anyDuplicated, aperm, append,
    as.data.frame, basename, cbind, colnames, dirname, do.call, duplicated, eval,
    evalq, get, grep, grepl, is.unsorted, lapply, mapply, match, mget, order, paste,
    pmax, pmax.int, pmin, pmin.int, rank, rbind, rownames, sapply, saveRDS, table,
    tapply, unique, unsplit, which.max, which.min

Loading required package: Biobase
Welcome to Bioconductor

    Vignettes contain introductory material; view with 'browseVignettes()'. To cite
    Bioconductor, see 'citation("Biobase")', and for packages 'citation("pkgname")'.

Loading required package: qvalue
Loading required package: limma

Attaching package: ‘limma’

The following object is masked from ‘package:BiocGenerics’:

    plotMA

Loading required package: hexbin
Loading required package: statmod
Warning: In pretty.default(x = base::quote(c(5.52356195605701, 13.9435221339049
)), i = base::quote(1), j = base::quote(1), n = base::quote(5)) :
 extra arguments ‘i’, ‘j’ will be disregarded
Warning: In pretty.default(x = base::quote(c(5.39231742277876, 13.9153005418943
)), i = base::quote(2), j = base::quote(2), n = base::quote(5)) :
 extra arguments ‘i’, ‘j’ will be disregarded
Warning: In pretty.default(x = base::quote(c(5.59991284218713, 13.945306656773
)), i = base::quote(3), j = base::quote(3), n = base::quote(5)) :
 extra arguments ‘i’, ‘j’ will be disregarded
Warning: In pretty.default(x = base::quote(c(5.55458885167764, 14.0178088451449
)), i = base::quote(4), j = base::quote(4), n = base::quote(5)) :
 extra arguments ‘i’, ‘j’ will be disregarded
Warning: In pretty.default(x = base::quote(c(5.65248649491816, 14.0133488469007
)), i = base::quote(5), j = base::quote(5), n = base::quote(5)) :
 extra arguments ‘i’, ‘j’ will be disregarded
Warning: In pretty.default(x = base::quote(c(5.61470984411521, 15.1298464596551
)), i = base::quote(6), j = base::quote(6), n = base::quote(5)) :
 extra arguments ‘i’, ‘j’ will be disregarded

Error: processing vignette 'DiffExpressVignette.Snw' failed with diagnostics:
 chunk 6 
Error : unknown Bioconductor version '3.23'; see https://bioconductor.org/install

--- failed re-building ‘DiffExpressVignette.Snw’

SUMMARY: processing the following file failed:
  ‘DiffExpressVignette.Snw’

Error: Vignette re-building failed.
Execution halted