| Back to Rapid builds (Linux only) of a subset of BioC 3.22 Report updated every 6 hours |
This page was generated on 2025-07-24 09:37 -0400 (Thu, 24 Jul 2025).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| teran2 | Linux (Ubuntu 24.04.1 LTS) | x86_64 | 4.5.0 (2025-04-11) -- "How About a Twenty-Six" | 914 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 82/229 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | |||||||
| enrichplot 1.29.2 (landing page) Guangchuang Yu
| teran2 | Linux (Ubuntu 24.04.1 LTS) / x86_64 | OK | OK | WARNINGS | |||||||
|
To the developers/maintainers of the enrichplot package: - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: enrichplot |
| Version: 1.29.2 |
| Command: /home/rapidbuild/bbs-3.22-bioc-rapid/R/bin/R CMD check --install=check:enrichplot.install-out.txt --library=/home/rapidbuild/bbs-3.22-bioc-rapid/R/site-library --timings enrichplot_1.29.2.tar.gz |
| StartedAt: 2025-07-24 08:04:50 -0400 (Thu, 24 Jul 2025) |
| EndedAt: 2025-07-24 08:06:58 -0400 (Thu, 24 Jul 2025) |
| EllapsedTime: 127.7 seconds |
| RetCode: 0 |
| Status: WARNINGS |
| CheckDir: enrichplot.Rcheck |
| Warnings: 1 |
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### Running command:
###
### /home/rapidbuild/bbs-3.22-bioc-rapid/R/bin/R CMD check --install=check:enrichplot.install-out.txt --library=/home/rapidbuild/bbs-3.22-bioc-rapid/R/site-library --timings enrichplot_1.29.2.tar.gz
###
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##############################################################################
* using log directory ‘/media/volume/teran2_disk/rapidbuild/bbs-3.22-bioc-rapid/meat/enrichplot.Rcheck’
* using R version 4.5.0 (2025-04-11)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
gcc (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
GNU Fortran (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
* running under: Ubuntu 24.04.2 LTS
* using session charset: UTF-8
* checking for file ‘enrichplot/DESCRIPTION’ ... OK
* this is package ‘enrichplot’ version ‘1.29.2’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘enrichplot’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking whether startup messages can be suppressed ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... WARNING
ggplot_add:
function(object, plot, ...)
ggplot_add.autofacet:
function(object, plot, object_name)
See section ‘Generic functions and methods’ in the ‘Writing R
Extensions’ manual.
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
gseaplot 7.996 0.538 5.245
ridgeplot 6.177 0.555 3.384
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... OK
* DONE
Status: 1 WARNING
See
‘/media/volume/teran2_disk/rapidbuild/bbs-3.22-bioc-rapid/meat/enrichplot.Rcheck/00check.log’
for details.
enrichplot.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/rapidbuild/bbs-3.22-bioc-rapid/R/bin/R CMD INSTALL enrichplot ### ############################################################################## ############################################################################## * installing to library ‘/media/volume/teran2_disk/rapidbuild/bbs-3.22-bioc-rapid/R/site-library’ * installing *source* package ‘enrichplot’ ... ** this is package ‘enrichplot’ version ‘1.29.2’ ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (enrichplot)
enrichplot.Rcheck/enrichplot-Ex.timings
| name | user | system | elapsed | |
| barplot.enrichResult | 2.312 | 0.073 | 2.500 | |
| color_palette | 0.001 | 0.000 | 0.002 | |
| dotplot | 0.000 | 0.000 | 0.001 | |
| emapplot | 0.000 | 0.001 | 0.000 | |
| goplot | 0 | 0 | 0 | |
| gseaplot | 7.996 | 0.538 | 5.245 | |
| heatplot | 0.954 | 0.047 | 1.113 | |
| pairwise_termsim | 0 | 0 | 0 | |
| ridgeplot | 6.177 | 0.555 | 3.384 | |
| ssplot | 0.000 | 0.000 | 0.001 | |
| treeplot | 0.001 | 0.000 | 0.000 | |
| upsetplot-methods | 2.222 | 0.138 | 2.474 | |
| volplot | 1.104 | 0.025 | 1.246 | |