| Back to Long Tests report for BioC 3.22 |
This page was generated on 2025-06-28 23:55 -0400 (Sat, 28 Jun 2025).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 24.04.2 LTS) | x86_64 | 4.5.1 (2025-06-13) -- "Great Square Root" | 4775 |
| palomino8 | Windows Server 2022 Datacenter | x64 | 4.5.1 (2025-06-13 ucrt) -- "Great Square Root" | 4517 |
| lconway | macOS 12.7.1 Monterey | x86_64 | 4.5.1 (2025-06-13) -- "Great Square Root" | 4559 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 5/29 | Hostname | OS / Arch | CHECK | |||||||
| biodbChebi 1.15.1 (landing page) Pierrick Roger
| nebbiolo2 | Linux (Ubuntu 24.04.2 LTS) / x86_64 | OK | |||||||
| palomino8 | Windows Server 2022 Datacenter / x64 | OK | ||||||||
| lconway | macOS 12.7.1 Monterey / x86_64 | OK | ||||||||
|
To the developers/maintainers of the biodbChebi package: - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: biodbChebi |
| Version: 1.15.1 |
| Command: /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD check --test-dir=longtests --no-stop-on-test-error --no-codoc --no-examples --no-manual --ignore-vignettes --check-subdirs=no biodbChebi_1.15.1.tar.gz |
| StartedAt: 2025-06-28 16:01:09 -0400 (Sat, 28 Jun 2025) |
| EndedAt: 2025-06-28 16:04:21 -0400 (Sat, 28 Jun 2025) |
| EllapsedTime: 192.1 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: biodbChebi.Rcheck |
| Warnings: 0 |
biodbChebi.Rcheck/tests/testthat.Rout
R version 4.5.1 (2025-06-13) -- "Great Square Root"
Copyright (C) 2025 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> # Script needed to run testthat automatically from ‘R CMD check’. See
> # testthat::test_dir documentation.
> library(testthat)
> library(biodbChebi)
> Sys.setenv(TESTTHAT_REPORTER="summary")
> Sys.setenv(BIODB_LOG_DST="console")
> test_check("biodbChebi")
biodb.INFO [2025-06-28 16:01:41.545][biodb::testContext]
biodb.INFO [2025-06-28 16:01:41.547][biodb::testContext] ********************************************************************************
biodb.INFO [2025-06-28 16:01:41.548][biodb::testContext] Test context - Generic long tests
biodb.INFO [2025-06-28 16:01:41.549][biodb::testContext] ********************************************************************************
biodb.INFO [2025-06-28 16:01:41.550][biodb::testContext]
biodb.INFO [2025-06-28 16:01:41.557][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.17.1.
biodb.DEBUG[2025-06-28 16:01:41.559][self$loadDefinitions] Load definitions from file "/home/biocbuild/bbs-3.22-bioc/R/site-library/biodb/definitions.yml".
biodb.DEBUG[2025-06-28 16:01:41.566][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-06-28 16:01:41.567][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2025-06-28 16:01:41.569][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2025-06-28 16:01:41.570][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-28 16:01:41.571][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:01:41.572][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-28 16:01:41.573][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2025-06-28 16:01:41.593][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2025-06-28 16:01:41.594][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-28 16:01:41.595][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:01:41.596][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-28 16:01:41.597][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2025-06-28 16:01:41.598][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2025-06-28 16:01:41.599][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-28 16:01:41.600][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:01:41.601][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-28 16:01:41.602][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2025-06-28 16:01:41.603][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2025-06-28 16:01:41.604][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2025-06-28 16:01:41.605][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-28 16:01:41.606][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:01:41.607][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-28 16:01:41.608][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2025-06-28 16:01:41.609][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2025-06-28 16:01:41.610][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2025-06-28 16:01:41.611][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-28 16:01:41.612][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:01:41.613][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-28 16:01:41.614][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2025-06-28 16:01:41.615][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2025-06-28 16:01:41.616][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-28 16:01:41.617][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:01:41.618][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-28 16:01:41.619][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2025-06-28 16:01:41.620][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2025-06-28 16:01:41.621][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2025-06-28 16:01:41.622][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-28 16:01:41.631][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:01:41.632][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-28 16:01:41.632][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2025-06-28 16:01:41.633][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2025-06-28 16:01:41.634][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-28 16:01:41.635][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:01:41.636][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-28 16:01:41.636][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2025-06-28 16:01:41.637][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2025-06-28 16:01:41.638][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2025-06-28 16:01:41.639][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-28 16:01:41.640][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:01:41.641][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-28 16:01:41.642][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2025-06-28 16:01:41.642][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2025-06-28 16:01:41.643][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2025-06-28 16:01:41.644][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2025-06-28 16:01:41.645][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2025-06-28 16:01:41.646][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2025-06-28 16:01:41.647][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-28 16:01:41.648][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:01:41.648][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-28 16:01:41.649][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2025-06-28 16:01:41.650][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2025-06-28 16:01:41.651][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-28 16:01:41.652][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:01:41.653][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-28 16:01:41.653][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2025-06-28 16:01:41.654][self$set] Set key entries.sep to "|".
biodb.DEBUG[2025-06-28 16:01:41.655][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-28 16:01:41.656][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:01:41.657][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-28 16:01:41.658][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2025-06-28 16:01:41.658][self$set] Set key offline to FALSE.
biodb.DEBUG[2025-06-28 16:01:41.659][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-28 16:01:41.660][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:01:41.661][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-28 16:01:41.662][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2025-06-28 16:01:41.663][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2025-06-28 16:01:41.663][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2025-06-28 16:01:41.664][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-28 16:01:41.665][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:01:41.666][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-28 16:01:41.667][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2025-06-28 16:01:41.668][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2025-06-28 16:01:41.672][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2025-06-28 16:01:41.672][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-28 16:01:41.673][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:01:41.674][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-28 16:01:41.675][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2025-06-28 16:01:41.676][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2025-06-28 16:01:41.677][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2025-06-28 16:01:41.678][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-28 16:01:41.678][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:01:41.679][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-28 16:01:41.682][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2025-06-28 16:01:41.713][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-06-28 16:01:41.727][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2025-06-28 16:01:41.728][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-06-28 16:01:41.729][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-06-28 16:01:41.730][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-06-28 16:01:41.731][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-06-28 16:01:41.732][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-06-28 16:01:41.733][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-06-28 16:01:41.734][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2025-06-28 16:01:41.735][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-06-28 16:01:41.736][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-06-28 16:01:41.737][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2025-06-28 16:01:41.738][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-06-28 16:01:41.738][self$setPropertyValue]
biodb.DEBUG[2025-06-28 16:01:41.739][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-06-28 16:01:41.740][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-06-28 16:01:41.740][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-06-28 16:01:41.740][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-06-28 16:01:41.740][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2025-06-28 16:01:41.740][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2025-06-28 16:01:41.741][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-06-28 16:01:41.742][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-06-28 16:01:41.743][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-06-28 16:01:41.744][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-06-28 16:01:41.745][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-06-28 16:01:41.745][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-06-28 16:01:41.746][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-06-28 16:01:41.747][self$setPropertyValue]
biodb.DEBUG[2025-06-28 16:01:41.748][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-06-28 16:01:41.749][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-06-28 16:01:41.750][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-06-28 16:01:41.751][self$setPropertyValue]
biodb.DEBUG[2025-06-28 16:01:41.752][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2025-06-28 16:01:41.753][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-06-28 16:01:41.754][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2025-06-28 16:01:41.755][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-06-28 16:01:41.756][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-06-28 16:01:41.757][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-06-28 16:01:41.758][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-06-28 16:01:41.759][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-06-28 16:01:41.760][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-06-28 16:01:41.760][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2025-06-28 16:01:41.761][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-06-28 16:01:41.762][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-06-28 16:01:41.763][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2025-06-28 16:01:41.764][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-06-28 16:01:41.765][self$setPropertyValue]
biodb.DEBUG[2025-06-28 16:01:41.766][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-06-28 16:01:41.767][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-06-28 16:01:41.767][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-06-28 16:01:41.767][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-06-28 16:01:41.767][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2025-06-28 16:01:41.767][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2025-06-28 16:01:41.768][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-06-28 16:01:41.769][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-06-28 16:01:41.769][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-06-28 16:01:41.770][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-06-28 16:01:41.771][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-06-28 16:01:41.772][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-06-28 16:01:41.773][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-06-28 16:01:41.774][self$setPropertyValue]
biodb.DEBUG[2025-06-28 16:01:41.775][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-06-28 16:01:41.775][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-06-28 16:01:41.776][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-06-28 16:01:41.777][self$setPropertyValue]
biodb.DEBUG[2025-06-28 16:01:41.778][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2025-06-28 16:01:41.780][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-06-28 16:01:41.781][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2025-06-28 16:01:41.782][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-06-28 16:01:41.783][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-06-28 16:01:41.783][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-06-28 16:01:41.784][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-06-28 16:01:41.785][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-06-28 16:01:41.786][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-06-28 16:01:41.787][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2025-06-28 16:01:41.788][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-06-28 16:01:41.789][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2025-06-28 16:01:41.790][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2025-06-28 16:01:41.791][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-06-28 16:01:41.792][self$setPropertyValue]
biodb.DEBUG[2025-06-28 16:01:41.792][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-06-28 16:01:41.793][self$setPropertyValue]
biodb.DEBUG[2025-06-28 16:01:41.794][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-06-28 16:01:41.795][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-06-28 16:01:41.796][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-06-28 16:01:41.797][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-06-28 16:01:41.798][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-06-28 16:01:41.798][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-06-28 16:01:41.799][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-06-28 16:01:41.800][self$setPropertyValue]
biodb.DEBUG[2025-06-28 16:01:41.801][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-06-28 16:01:41.802][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-06-28 16:01:41.803][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-06-28 16:01:41.804][self$setPropertyValue]
biodb.DEBUG[2025-06-28 16:01:41.805][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2025-06-28 16:01:41.806][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-06-28 16:01:41.807][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2025-06-28 16:01:41.808][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-06-28 16:01:41.809][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-06-28 16:01:41.810][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-06-28 16:01:41.811][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-06-28 16:01:41.812][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-06-28 16:01:41.813][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-06-28 16:01:41.813][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2025-06-28 16:01:41.814][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-06-28 16:01:41.815][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2025-06-28 16:01:41.816][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2025-06-28 16:01:41.817][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-06-28 16:01:41.818][self$setPropertyValue]
biodb.DEBUG[2025-06-28 16:01:41.819][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-06-28 16:01:41.820][self$setPropertyValue]
biodb.DEBUG[2025-06-28 16:01:41.821][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-06-28 16:01:41.822][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-06-28 16:01:41.822][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-06-28 16:01:41.823][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-06-28 16:01:41.824][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-06-28 16:01:41.829][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-06-28 16:01:41.830][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-06-28 16:01:41.831][self$setPropertyValue]
biodb.DEBUG[2025-06-28 16:01:41.832][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-06-28 16:01:41.833][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-06-28 16:01:41.834][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-06-28 16:01:41.834][self$setPropertyValue]
biodb.DEBUG[2025-06-28 16:01:41.838][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-06-28 16:01:41.839][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:01:41.840][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-28 16:01:41.840][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-28 16:01:41.841][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:01:41.842][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:01:41.843][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:01:41.844][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-28 16:01:41.844][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-28 16:01:41.845][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:01:41.846][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:01:41.847][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:01:41.848][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-28 16:01:41.848][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-28 16:01:41.849][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:01:41.850][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:01:41.851][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:01:41.852][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-28 16:01:41.852][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-28 16:01:41.853][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:01:41.854][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:01:41.855][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:01:41.856][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-28 16:01:41.856][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-28 16:01:41.857][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:01:41.858][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:01:41.859][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:01:41.860][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-28 16:01:41.860][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-28 16:01:41.861][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:01:41.862][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:01:41.863][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:01:41.864][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-28 16:01:41.864][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-28 16:01:41.865][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:01:41.866][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:01:41.867][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:01:41.868][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-28 16:01:41.868][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-28 16:01:41.869][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:01:41.870][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:01:41.871][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:01:41.872][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-28 16:01:41.872][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-28 16:01:41.873][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:01:41.874][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:01:41.875][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:01:41.876][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-28 16:01:41.876][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-28 16:01:41.877][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:01:41.878][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:01:41.879][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:01:41.880][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-28 16:01:41.880][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-28 16:01:41.881][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:01:41.882][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:01:41.883][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:01:41.884][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-28 16:01:41.885][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-28 16:01:41.885][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:01:41.886][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:01:41.887][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:01:41.888][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-28 16:01:41.889][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-28 16:01:41.889][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:01:41.890][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:01:41.891][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:01:41.892][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-28 16:01:41.893][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-28 16:01:41.893][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:01:41.894][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:01:41.895][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:01:41.896][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-28 16:01:41.897][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-28 16:01:41.897][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:01:41.898][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:01:41.899][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:01:41.900][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-28 16:01:41.901][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-28 16:01:41.901][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:01:41.902][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:01:41.903][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:01:41.904][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-28 16:01:41.905][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2025-06-28 16:01:41.909][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2025-06-28 16:01:41.910][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2025-06-28 16:01:41.912][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2025-06-28 16:01:41.913][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2025-06-28 16:01:41.914][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2025-06-28 16:01:41.915][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2025-06-28 16:01:41.917][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2025-06-28 16:01:41.918][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2025-06-28 16:01:41.919][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2025-06-28 16:01:41.920][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2025-06-28 16:01:41.922][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2025-06-28 16:01:41.923][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2025-06-28 16:01:41.924][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2025-06-28 16:01:41.925][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2025-06-28 16:01:41.927][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2025-06-28 16:01:41.928][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2025-06-28 16:01:41.929][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2025-06-28 16:01:41.931][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2025-06-28 16:01:41.932][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2025-06-28 16:01:41.933][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2025-06-28 16:01:41.934][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2025-06-28 16:01:41.936][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2025-06-28 16:01:41.937][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2025-06-28 16:01:41.938][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2025-06-28 16:01:41.939][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2025-06-28 16:01:41.941][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2025-06-28 16:01:41.942][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2025-06-28 16:01:41.943][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2025-06-28 16:01:41.945][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2025-06-28 16:01:41.946][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2025-06-28 16:01:41.947][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2025-06-28 16:01:41.948][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2025-06-28 16:01:41.950][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2025-06-28 16:01:41.951][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2025-06-28 16:01:41.952][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2025-06-28 16:01:41.953][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2025-06-28 16:01:41.955][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2025-06-28 16:01:41.956][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2025-06-28 16:01:41.957][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2025-06-28 16:01:41.959][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2025-06-28 16:01:41.960][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2025-06-28 16:01:41.961][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2025-06-28 16:01:41.962][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2025-06-28 16:01:41.964][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2025-06-28 16:01:41.965][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2025-06-28 16:01:41.966][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2025-06-28 16:01:41.968][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2025-06-28 16:01:41.969][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2025-06-28 16:01:41.970][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2025-06-28 16:01:41.971][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2025-06-28 16:01:41.973][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2025-06-28 16:01:41.974][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2025-06-28 16:01:41.975][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2025-06-28 16:01:41.977][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2025-06-28 16:01:41.978][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2025-06-28 16:01:41.979][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2025-06-28 16:01:41.980][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2025-06-28 16:01:41.982][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2025-06-28 16:01:41.983][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2025-06-28 16:01:41.984][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2025-06-28 16:01:41.985][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2025-06-28 16:01:41.987][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2025-06-28 16:01:41.988][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2025-06-28 16:01:41.989][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2025-06-28 16:01:41.991][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2025-06-28 16:01:41.992][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2025-06-28 16:01:41.993][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2025-06-28 16:01:41.994][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2025-06-28 16:01:41.996][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2025-06-28 16:01:41.997][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2025-06-28 16:01:41.998][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2025-06-28 16:01:42.000][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2025-06-28 16:01:42.001][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2025-06-28 16:01:42.002][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2025-06-28 16:01:42.003][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2025-06-28 16:01:42.005][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2025-06-28 16:01:42.006][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2025-06-28 16:01:42.007][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2025-06-28 16:01:42.008][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2025-06-28 16:01:42.010][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2025-06-28 16:01:42.011][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2025-06-28 16:01:42.012][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2025-06-28 16:01:42.018][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2025-06-28 16:01:42.019][initialize] This is biodb version 1.17.1.
biodb.DEBUG[2025-06-28 16:01:42.022][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-06-28 16:01:42.023][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:01:42.024][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:01:42.029][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:01:42.030][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-28 16:01:42.034][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-28 16:01:42.035][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:01:42.036][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:01:42.037][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:01:42.038][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:01:42.038][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:01:42.039][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-28 16:01:42.040][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-28 16:01:42.041][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:01:42.042][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:01:42.042][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:01:42.043][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:01:42.044][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:01:42.045][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-28 16:01:42.046][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-28 16:01:42.046][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:01:42.047][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:01:42.048][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:01:42.049][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:01:42.050][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:01:42.050][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-28 16:01:42.051][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-28 16:01:42.052][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:01:42.053][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:01:42.054][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:01:42.054][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:01:42.055][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:01:42.056][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-28 16:01:42.057][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-28 16:01:42.058][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:01:42.058][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:01:42.059][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:01:42.060][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:01:42.061][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:01:42.062][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-28 16:01:42.062][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-28 16:01:42.063][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:01:42.064][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:01:42.065][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:01:42.066][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:01:42.066][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:01:42.067][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-28 16:01:42.068][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-28 16:01:42.069][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:01:42.070][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:01:42.070][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:01:42.071][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:01:42.072][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:01:42.073][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-28 16:01:42.074][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-28 16:01:42.075][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:01:42.075][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:01:42.076][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:01:42.077][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:01:42.078][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:01:42.079][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-28 16:01:42.079][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-28 16:01:42.080][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:01:42.081][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:01:42.082][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:01:42.083][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:01:42.084][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:01:42.084][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-28 16:01:42.085][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-28 16:01:42.086][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:01:42.087][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:01:42.088][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:01:42.088][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:01:42.089][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:01:42.090][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-28 16:01:42.091][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-28 16:01:42.092][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:01:42.093][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:01:42.093][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:01:42.094][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:01:42.095][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:01:42.096][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-28 16:01:42.097][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-28 16:01:42.097][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:01:42.098][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:01:42.099][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:01:42.100][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:01:42.101][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:01:42.101][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-28 16:01:42.102][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-28 16:01:42.103][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:01:42.104][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:01:42.105][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:01:42.105][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:01:42.106][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:01:42.107][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-28 16:01:42.108][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-28 16:01:42.109][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:01:42.109][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:01:42.110][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:01:42.111][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:01:42.112][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:01:42.113][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-28 16:01:42.114][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-28 16:01:42.114][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:01:42.115][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:01:42.116][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:01:42.117][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:01:42.118][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:01:42.118][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-28 16:01:42.119][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-06-28 16:01:42.120][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:01:42.121][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:01:42.122][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:01:42.122][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:01:42.123][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:01:42.124][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-28 16:01:42.125][biodb$loadDefinitions] Load definitions from file "/home/biocbuild/bbs-3.22-bioc-longtests/meat/biodbChebi.Rcheck/biodbChebi/definitions.yml".
biodb.DEBUG[2025-06-28 16:01:42.134][self$getDbsInfo()$define] Define connector chebi.
biodb.DEBUG[2025-06-28 16:01:42.136][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-06-28 16:01:42.137][self$setPropertyValue] Setting property "description" to "NA".
biodb.DEBUG[2025-06-28 16:01:42.138][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-06-28 16:01:42.139][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-06-28 16:01:42.140][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-06-28 16:01:42.141][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-06-28 16:01:42.142][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2025-06-28 16:01:42.149][self$setPropertyValue] Setting property "entry.content.encoding" to "UTF-8".
biodb.DEBUG[2025-06-28 16:01:42.151][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2025-06-28 16:01:42.152][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-06-28 16:01:42.153][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-06-28 16:01:42.154][self$setPropertyValue] Setting property "name" to "ChEBI".
biodb.DEBUG[2025-06-28 16:01:42.155][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-06-28 16:01:42.156][self$setPropertyValue] Setting property "parsing.expr" to "substring-after(//chebi:return/chebi:chebiId,'CHEBI:')".
biodb.DEBUG[2025-06-28 16:01:42.156][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:charge".
biodb.DEBUG[2025-06-28 16:01:42.156][self$setPropertyValue] Setting property "parsing.expr" to "c("//chebi:Formulae/chebi:source[text()='ChEBI']/../chebi:data", "(//chebi:Formulae/chebi:data)[1]")".
biodb.DEBUG[2025-06-28 16:01:42.156][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchi".
biodb.DEBUG[2025-06-28 16:01:42.156][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchiKey".
biodb.DEBUG[2025-06-28 16:01:42.156][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:DatabaseLinks/chebi:type[text()='KEGG COMPOUND accession']/../chebi:data".
biodb.DEBUG[2025-06-28 16:01:42.156][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:mass".
biodb.DEBUG[2025-06-28 16:01:42.156][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:monoisotopicMass".
biodb.DEBUG[2025-06-28 16:01:42.156][self$setPropertyValue] Setting property "parsing.expr" to "c("//chebi:chebiAsciiName", "//chebi:Synonyms/chebi:data")".
biodb.DEBUG[2025-06-28 16:01:42.156][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:entityStar".
biodb.DEBUG[2025-06-28 16:01:42.156][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:smiles".
biodb.DEBUG[2025-06-28 16:01:42.158][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2025-06-28 16:01:42.159][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-06-28 16:01:42.159][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-06-28 16:01:42.159][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-06-28 16:01:42.160][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2025-06-28 16:01:42.161][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-06-28 16:01:42.162][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-06-28 16:01:42.163][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-06-28 16:01:42.164][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-06-28 16:01:42.165][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-06-28 16:01:42.166][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-06-28 16:01:42.167][self$setPropertyValue] Setting property "urls" to "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-06-28 16:01:42.167][self$setPropertyValue] Setting property "urls" to "https://www.ebi.ac.uk/webservices/chebi/2.0/".
biodb.DEBUG[2025-06-28 16:01:42.168][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-06-28 16:01:42.169][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-06-28 16:01:42.170][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2025-06-28 16:01:42.171][self$setPropertyValue] Setting property "xml.ns" to "https://www.ebi.ac.uk/webservices/chebi".
biodb.DEBUG[2025-06-28 16:01:42.171][self$setPropertyValue] Setting property "xml.ns" to "http://www.w3.org/2001/XMLSchema".
biodb.DEBUG[2025-06-28 16:01:42.178][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2025-06-28 16:01:42.180][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2025-06-28 16:01:42.182][self$getEntryFields()$define] Define field n_stars.
biodb.DEBUG[2025-06-28 16:01:42.183][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2025-06-28 16:01:42.185][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2025-06-28 16:01:42.186][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2025-06-28 16:01:42.214][super$initialize] Initialize connector chebi.
biodb.DEBUG[2025-06-28 16:01:42.231][biodb$getFactory()$createConn] Creating new connector chebi for database class chebi .
biodb.INFO [2025-06-28 16:01:42.240][biodb::testThat]
biodb.INFO [2025-06-28 16:01:42.241][biodb::testThat] Running test function test.entry.fields (" Entry fields have a correct value ").
biodb.INFO [2025-06-28 16:01:42.242][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-06-28 16:01:42.243][biodb::testThat]
biodb.TRACE[2025-06-28 16:01:42.247][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/bbs-3.22-bioc-longtests/meat/biodbChebi.Rcheck/biodbChebi/testref/entry-chebi-15440-content.xml".
biodb.DEBUG[2025-06-28 16:01:42.249][biodb$getFactory()$createEntryFromCo ...] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-06-28 16:01:42.252][biodb$getFactory()$createEntryFromCo ...] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-06-28 16:01:42.270][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:01:42.271][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:01:42.272][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:01:42.284][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:01:42.285][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:01:42.286][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:01:42.287][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:01:42.296][ef$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:01:42.297][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:01:42.298][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:42.299][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:42.301][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:01:42.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:01:42.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:42.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:42.317][ef$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:01:42.318][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:01:42.319][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:42.320][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:42.347][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:01:42.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:01:42.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:42.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:42.351][ef$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:01:42.353][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:01:42.353][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:42.354][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:42.356][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:01:42.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:01:42.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:42.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:42.360][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:01:42.361][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:01:42.362][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:42.363][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:42.364][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:01:42.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:01:42.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:42.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:42.368][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:01:42.369][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:01:42.370][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:42.371][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:42.372][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:01:42.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:01:42.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:42.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:42.376][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:01:42.377][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:01:42.378][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:42.379][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:42.380][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:01:42.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:01:42.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:42.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:42.384][ef$get] Asked field names are: mass.
biodb.TRACE[2025-06-28 16:01:42.385][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:42.386][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:42.387][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:42.388][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-06-28 16:01:42.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:42.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:42.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:42.392][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:42.393][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:42.394][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:42.395][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:42.396][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:42.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:42.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:42.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:42.400][ef$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:01:42.401][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:01:42.402][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:42.403][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:42.404][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:01:42.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:01:42.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:42.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:42.408][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-06-28 16:01:42.409][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:01:42.410][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:42.410][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:42.411][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-06-28 16:01:42.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:01:42.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:42.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:42.415][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:01:42.416][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:01:42.417][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:42.418][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:42.419][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:01:42.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:01:42.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:42.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:42.423][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:01:42.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:01:42.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:42.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:42.426][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:01:42.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:01:42.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:42.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:42.430][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:01:42.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:01:42.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:42.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:42.433][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:01:42.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:01:42.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:42.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:42.437][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:01:42.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:01:42.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:42.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:42.441][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:01:42.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:01:42.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:42.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:42.445][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:01:42.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:01:42.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:42.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:42.482][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:01:42.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:01:42.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:42.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:42.486][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:01:42.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:01:42.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:42.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:42.490][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:01:42.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:01:42.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:42.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:01:42.494][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 15440.
biodb.TRACE[2025-06-28 16:01:42.496][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:01:42.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:01:42.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:42.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:42.500][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:01:42.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:01:42.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:42.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:42.525][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:01:42.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:01:42.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:42.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:42.528][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:01:42.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:01:42.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:42.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:42.532][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:42.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:42.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:42.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:42.536][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:42.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:42.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:42.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:42.539][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-06-28 16:01:42.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-06-28 16:01:42.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:42.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:42.543][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-06-28 16:01:42.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-06-28 16:01:42.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:42.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:42.547][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-06-28 16:01:42.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-06-28 16:01:42.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:42.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:42.550][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-06-28 16:01:42.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-06-28 16:01:42.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:42.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:42.556][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:01:42.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:01:42.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:42.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:42.571][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:01:42.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:01:42.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:42.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:42.577][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:01:42.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:01:42.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:42.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:42.581][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:01:42.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:01:42.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:42.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:42.585][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:01:42.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:01:42.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:42.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:42.590][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:01:42.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:01:42.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:42.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:42.593][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:01:42.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:01:42.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:42.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:42.597][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:01:42.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:01:42.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:42.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:42.604][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:01:42.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:01:42.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:42.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:42.608][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:01:42.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:01:42.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:42.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:42.612][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:01:42.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:01:42.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:42.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:42.621][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:01:42.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:01:42.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:42.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:42.624][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:01:42.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:01:42.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:42.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:42.628][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:01:42.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:01:42.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:42.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:42.631][ef$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:01:42.632][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:01:42.633][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:42.634][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:42.635][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:01:42.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:01:42.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:42.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:42.645][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:01:42.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:01:42.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:42.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:42.649][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:01:42.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:01:42.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:42.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:42.652][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:01:42.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:01:42.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:42.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:42.656][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:01:42.657][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:01:42.658][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:42.659][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:42.659][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:01:42.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:01:42.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:42.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:42.669][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:01:42.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:01:42.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:42.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:42.673][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:01:42.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:01:42.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:42.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:42.676][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:01:42.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:01:42.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:42.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:42.680][ef$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:01:42.681][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:01:42.682][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:42.683][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:42.684][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:01:42.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:01:42.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:42.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:42.693][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:01:42.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:01:42.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:42.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:42.697][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:01:42.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:01:42.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:42.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:42.700][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:01:42.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:01:42.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:42.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:42.704][ef$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:01:42.705][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:01:42.706][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:42.707][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:42.708][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:01:42.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:01:42.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:42.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:42.717][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:42.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:42.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:42.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:42.721][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:42.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:42.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:42.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:42.725][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:42.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:42.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:42.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:42.728][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:42.729][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:42.730][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:42.731][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:42.732][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:42.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:42.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:42.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:42.741][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:42.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:42.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:42.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:42.745][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:42.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:42.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:42.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:42.749][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:42.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:42.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:42.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:42.752][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:42.753][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:42.754][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:42.755][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:42.756][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:42.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:42.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:42.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:42.769][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:01:42.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:01:42.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:42.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:42.773][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:01:42.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:01:42.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:42.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:42.776][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:01:42.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:01:42.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:42.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:42.780][ef$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:01:42.781][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:01:42.782][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:42.783][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:42.784][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:01:42.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:01:42.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:42.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:42.793][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-06-28 16:01:42.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:01:42.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:42.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:42.797][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-06-28 16:01:42.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:01:42.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:42.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:42.800][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-06-28 16:01:42.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:01:42.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:42.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:42.804][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-06-28 16:01:42.805][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:01:42.806][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:42.806][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:42.807][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-06-28 16:01:42.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:01:42.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:42.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:42.817][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:01:42.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:01:42.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:42.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:42.821][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:01:42.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:01:42.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:42.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:42.824][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:01:42.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:01:42.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:42.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:42.828][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:01:42.829][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:01:42.830][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:42.831][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:42.832][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:01:42.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:01:42.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:42.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:42.842][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:01:42.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:01:42.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:42.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:42.845][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:01:42.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:01:42.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:42.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:42.849][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:01:42.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:01:42.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:42.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:42.852][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:01:42.853][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:01:42.854][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:42.855][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:42.856][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:01:42.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:01:42.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:42.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:42.866][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:01:42.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:01:42.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:42.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:42.869][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:01:42.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:01:42.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:42.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:42.873][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:01:42.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:01:42.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:42.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:42.877][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:01:42.877][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:01:42.878][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:42.879][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:42.880][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:01:42.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:01:42.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:42.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:42.890][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:01:42.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:01:42.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:42.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:42.893][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:01:42.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:01:42.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:42.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:42.897][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:01:42.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:01:42.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:42.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:42.901][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:01:42.902][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:01:42.902][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:42.903][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:42.904][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:01:42.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:01:42.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:42.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:42.914][ef$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:01:42.915][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:01:42.916][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:42.917][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:42.921][ef$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:01:42.922][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:01:42.922][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:42.923][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:42.953][ef$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:01:42.954][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:01:42.955][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:42.956][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:42.960][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:01:42.961][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:01:42.962][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:42.962][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:42.966][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:01:42.967][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:01:42.968][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:42.969][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:42.973][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:01:42.973][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:01:42.974][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:42.975][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:42.979][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:42.980][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:42.981][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:42.981][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:42.985][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:42.986][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:42.987][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:42.988][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:42.992][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-06-28 16:01:42.993][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:01:42.993][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:42.994][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:42.998][ef$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:01:42.999][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:01:43.000][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:43.001][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:43.004][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:01:43.005][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:01:43.006][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:43.007][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:43.022][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/bbs-3.22-bioc-longtests/meat/biodbChebi.Rcheck/biodbChebi/testref/entry-chebi-2528-content.xml".
biodb.DEBUG[2025-06-28 16:01:43.055][biodb$getFactory()$createEntryFromCo ...] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-06-28 16:01:43.056][biodb$getFactory()$createEntryFromCo ...] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-06-28 16:01:43.057][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:01:43.058][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:01:43.059][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:01:43.063][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:01:43.064][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:01:43.065][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:01:43.065][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:01:43.067][ef$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:01:43.068][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:01:43.069][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:43.070][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:43.071][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:01:43.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:01:43.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:43.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:43.090][ef$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:01:43.091][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:01:43.092][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:43.093][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:43.098][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:01:43.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:01:43.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:43.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:43.101][ef$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:01:43.102][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:01:43.103][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:43.104][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:43.105][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:01:43.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:01:43.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:43.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:43.109][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:01:43.110][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:01:43.111][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:43.112][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:43.113][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:01:43.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:01:43.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:43.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:43.116][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:01:43.117][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:01:43.118][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:43.119][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:43.120][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:01:43.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:01:43.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:43.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:43.124][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:01:43.125][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:01:43.125][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:43.126][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:43.127][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:01:43.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:01:43.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:43.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:43.131][ef$get] Asked field names are: mass.
biodb.TRACE[2025-06-28 16:01:43.132][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:43.133][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:43.134][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:43.135][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-06-28 16:01:43.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:43.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:43.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:43.138][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:43.139][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:43.140][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:43.141][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:43.142][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:43.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:43.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:43.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:43.146][ef$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:01:43.147][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:01:43.148][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:43.149][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:43.150][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:01:43.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:01:43.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:43.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:43.153][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-06-28 16:01:43.154][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:01:43.155][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:43.156][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:43.157][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-06-28 16:01:43.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:01:43.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:43.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:43.161][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:01:43.162][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:01:43.163][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:43.164][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:43.165][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:01:43.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:01:43.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:43.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:43.168][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:01:43.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:01:43.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:43.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:43.172][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:01:43.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:01:43.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:43.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:43.175][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:01:43.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:01:43.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:43.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:43.179][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:01:43.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:01:43.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:43.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:43.183][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:01:43.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:01:43.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:43.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:43.186][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:01:43.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:01:43.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:43.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:43.190][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:01:43.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:01:43.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:43.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:43.194][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:01:43.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:01:43.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:43.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:43.197][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:01:43.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:01:43.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:43.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:43.201][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:01:43.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:01:43.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:43.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:01:43.204][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 2528.
biodb.TRACE[2025-06-28 16:01:43.224][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:01:43.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:01:43.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:43.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:43.227][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:01:43.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:01:43.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:43.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:43.231][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:01:43.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:01:43.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:43.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:43.235][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:01:43.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:01:43.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:43.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:43.238][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:43.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:43.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:43.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:43.242][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:43.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:43.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:43.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:43.245][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-06-28 16:01:43.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-06-28 16:01:43.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:43.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:43.249][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-06-28 16:01:43.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-06-28 16:01:43.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:43.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:43.253][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-06-28 16:01:43.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-06-28 16:01:43.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:43.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:43.260][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-06-28 16:01:43.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-06-28 16:01:43.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:43.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:43.265][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:01:43.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:01:43.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:43.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:43.272][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:01:43.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:01:43.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:43.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:43.278][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:01:43.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:01:43.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:43.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:43.282][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:01:43.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:01:43.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:43.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:43.285][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:01:43.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:01:43.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:43.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:43.290][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:01:43.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:01:43.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:43.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:43.294][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:01:43.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:01:43.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:43.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:43.297][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:01:43.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:01:43.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:43.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:43.301][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:01:43.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:01:43.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:43.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:43.305][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:01:43.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:01:43.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:43.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:43.308][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:01:43.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:01:43.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:43.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:43.326][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:01:43.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:01:43.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:43.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:43.330][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:01:43.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:01:43.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:43.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:43.334][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:01:43.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:01:43.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:43.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:43.337][ef$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:01:43.338][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:01:43.339][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:43.340][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:43.341][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:01:43.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:01:43.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:43.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:43.351][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:01:43.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:01:43.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:43.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:43.354][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:01:43.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:01:43.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:43.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:43.358][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:01:43.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:01:43.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:43.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:43.361][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:01:43.362][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:01:43.363][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:43.364][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:43.365][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:01:43.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:01:43.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:43.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:43.375][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:01:43.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:01:43.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:43.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:43.378][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:01:43.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:01:43.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:43.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:43.382][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:01:43.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:01:43.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:43.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:43.386][ef$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:01:43.387][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:01:43.387][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:43.388][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:43.389][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:01:43.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:01:43.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:43.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:43.399][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:01:43.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:01:43.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:43.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:43.402][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:01:43.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:01:43.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:43.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:43.406][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:01:43.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:01:43.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:43.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:43.410][ef$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:01:43.411][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:01:43.412][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:43.412][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:43.413][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:01:43.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:01:43.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:43.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:43.427][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-06-28 16:01:43.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:43.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:43.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:43.430][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:43.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:43.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:43.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:43.434][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:43.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:43.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:43.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:43.437][ef$get] Asked field names are: mass.
biodb.TRACE[2025-06-28 16:01:43.438][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:43.439][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:43.440][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:43.441][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-06-28 16:01:43.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:43.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:43.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:43.451][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:43.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:43.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:43.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:43.454][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:43.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:43.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:43.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:43.458][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:43.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:43.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:43.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:43.461][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:43.462][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:43.463][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:43.464][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:43.465][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:43.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:43.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:43.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:43.475][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:43.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:43.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:43.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:43.478][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:43.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:43.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:43.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:43.482][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:43.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:43.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:43.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:43.485][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:43.486][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:43.487][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:43.488][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:43.489][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:43.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:43.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:43.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:43.499][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:01:43.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:01:43.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:43.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:43.502][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:01:43.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:01:43.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:43.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:43.506][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:01:43.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:01:43.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:43.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:43.510][ef$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:01:43.511][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:01:43.511][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:43.512][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:43.513][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:01:43.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:01:43.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:43.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:43.523][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-06-28 16:01:43.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:01:43.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:43.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:43.526][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-06-28 16:01:43.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:01:43.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:43.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:43.530][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-06-28 16:01:43.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:01:43.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:43.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:43.534][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-06-28 16:01:43.535][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:01:43.535][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:43.536][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:43.537][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-06-28 16:01:43.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:01:43.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:43.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:43.547][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:01:43.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:01:43.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:43.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:43.551][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:01:43.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:01:43.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:43.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:43.554][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:01:43.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:01:43.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:43.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:43.558][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:01:43.559][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:01:43.560][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:43.560][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:43.561][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:01:43.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:01:43.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:43.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:43.571][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:01:43.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:01:43.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:43.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:43.575][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:01:43.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:01:43.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:43.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:43.582][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:01:43.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:01:43.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:43.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:43.585][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:01:43.586][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:01:43.587][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:43.588][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:43.589][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:01:43.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:01:43.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:43.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:43.599][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:01:43.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:01:43.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:43.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:43.602][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:01:43.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:01:43.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:43.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:43.606][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:01:43.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:01:43.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:43.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:43.609][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:01:43.610][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:01:43.611][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:43.612][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:43.613][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:01:43.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:01:43.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:43.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:43.623][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:01:43.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:01:43.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:43.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:43.627][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:01:43.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:01:43.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:43.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:43.630][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:01:43.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:01:43.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:43.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:43.634][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:01:43.635][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:01:43.636][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:43.637][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:43.637][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:01:43.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:01:43.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:43.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:43.647][ef$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:01:43.648][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:01:43.649][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:43.650][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:43.654][ef$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:01:43.655][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:01:43.656][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:43.657][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:43.660][ef$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:01:43.661][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:01:43.662][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:43.663][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:43.667][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:01:43.668][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:01:43.669][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:43.669][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:43.673][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:01:43.674][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:01:43.675][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:43.676][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:43.680][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:01:43.681][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:01:43.681][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:43.682][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:43.686][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:43.687][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:43.688][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:43.689][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:43.692][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:43.693][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:43.694][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:43.695][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:43.699][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-06-28 16:01:43.700][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:01:43.701][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:43.701][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:43.705][ef$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:01:43.706][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:01:43.707][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:43.708][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:43.712][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:01:43.713][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:01:43.714][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:43.714][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:43.718][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/bbs-3.22-bioc-longtests/meat/biodbChebi.Rcheck/biodbChebi/testref/entry-chebi-7799-content.xml".
biodb.DEBUG[2025-06-28 16:01:43.720][biodb$getFactory()$createEntryFromCo ...] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-06-28 16:01:43.721][biodb$getFactory()$createEntryFromCo ...] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-06-28 16:01:43.722][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:01:43.723][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:01:43.724][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:01:43.727][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:01:43.728][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:01:43.729][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:01:43.730][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:01:43.732][ef$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:01:43.733][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:01:43.734][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:43.735][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:43.736][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:01:43.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:01:43.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:43.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:43.744][ef$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:01:43.745][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:01:43.745][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:43.746][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:43.747][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:01:43.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:01:43.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:43.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:43.751][ef$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:01:43.752][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:01:43.753][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:43.754][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:43.755][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:01:43.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:01:43.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:43.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:43.759][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:01:43.759][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:01:43.760][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:43.761][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:43.762][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:01:43.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:01:43.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:43.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:43.766][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:01:43.767][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:01:43.768][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:43.769][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:43.770][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:01:43.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:01:43.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:43.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:43.773][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:01:43.774][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:01:43.775][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:43.776][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:43.777][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:01:43.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:01:43.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:43.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:43.781][ef$get] Asked field names are: mass.
biodb.TRACE[2025-06-28 16:01:43.782][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:43.783][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:43.783][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:43.785][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-06-28 16:01:43.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:43.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:43.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:43.788][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:43.789][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:43.790][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:43.791][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:43.792][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:43.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:43.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:43.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:43.796][ef$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:01:43.797][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:01:43.798][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:43.798][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:43.800][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:01:43.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:01:43.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:43.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:43.803][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-06-28 16:01:43.804][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:01:43.805][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:43.806][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:43.807][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-06-28 16:01:43.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:01:43.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:43.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:43.811][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:01:43.812][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:01:43.813][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:43.814][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:43.815][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:01:43.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:01:43.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:43.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:43.819][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:01:43.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:01:43.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:43.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:43.822][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:01:43.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:01:43.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:43.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:43.826][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:01:43.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:01:43.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:43.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:43.829][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:01:43.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:01:43.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:43.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:43.833][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:01:43.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:01:43.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:43.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:43.837][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:01:43.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:01:43.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:43.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:43.840][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:01:43.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:01:43.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:43.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:43.844][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:01:43.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:01:43.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:43.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:43.848][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:01:43.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:01:43.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:43.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:43.852][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:01:43.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:01:43.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:43.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:01:43.855][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 7799.
biodb.TRACE[2025-06-28 16:01:43.857][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:01:43.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:01:43.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:43.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:43.861][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:01:43.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:01:43.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:43.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:43.864][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:01:43.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:01:43.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:43.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:43.868][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:01:43.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:01:43.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:43.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:43.872][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:43.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:43.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:43.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:43.875][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:43.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:43.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:43.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:43.879][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-06-28 16:01:43.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-06-28 16:01:43.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:43.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:43.882][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-06-28 16:01:43.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-06-28 16:01:43.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:43.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:43.886][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-06-28 16:01:43.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-06-28 16:01:43.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:43.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:43.890][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-06-28 16:01:43.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-06-28 16:01:43.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:43.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:43.894][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:01:43.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:01:43.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:43.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:43.901][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:01:43.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:01:43.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:43.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:43.911][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:01:43.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:01:43.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:43.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:43.915][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:01:43.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:01:43.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:43.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:43.918][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:01:43.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:01:43.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:43.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:43.923][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:01:43.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:01:43.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:43.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:43.927][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:01:43.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:01:43.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:43.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:43.930][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:01:43.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:01:43.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:43.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:43.934][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:01:43.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:01:43.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:43.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:43.938][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:01:43.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:01:43.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:43.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:43.941][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:01:43.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:01:43.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:43.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:43.949][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:01:43.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:01:43.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:43.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:43.953][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:01:43.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:01:43.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:43.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:43.956][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:01:43.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:01:43.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:43.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:43.960][ef$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:01:43.961][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:01:43.962][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:43.963][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:43.964][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:01:43.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:01:43.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:43.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:43.974][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:01:43.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:01:43.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:43.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:43.977][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:01:43.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:01:43.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:43.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:43.981][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:01:43.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:01:43.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:43.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:43.984][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:01:43.985][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:01:43.986][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:43.987][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:43.988][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:01:43.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:01:43.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:43.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:43.998][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:01:43.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:01:44.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:44.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:44.001][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:01:44.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:01:44.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:44.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:44.005][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:01:44.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:01:44.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:44.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:44.009][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:01:44.009][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:01:44.010][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:44.011][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:44.012][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:01:44.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:01:44.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:44.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:44.022][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:01:44.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:01:44.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:44.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:44.026][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:01:44.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:01:44.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:44.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:44.029][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:01:44.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:01:44.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:44.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:44.033][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:01:44.034][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:01:44.035][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:44.035][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:44.036][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:01:44.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:01:44.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:44.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:44.046][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:01:44.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:01:44.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:44.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:44.050][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:01:44.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:01:44.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:44.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:44.053][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:01:44.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:01:44.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:44.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:44.057][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:01:44.058][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:01:44.059][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:44.060][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:44.061][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:01:44.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:01:44.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:44.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:44.074][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:44.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:44.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:44.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:44.078][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:44.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:44.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:44.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:44.081][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:44.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:44.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:44.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:44.085][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:44.086][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:44.087][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:44.087][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:44.088][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:44.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:44.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:44.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:44.098][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:44.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:44.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:44.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:44.102][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:44.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:44.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:44.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:44.105][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:44.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:44.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:44.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:44.109][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:44.110][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:44.111][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:44.112][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:44.112][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:44.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:44.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:44.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:44.123][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:01:44.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:01:44.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:44.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:44.126][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:01:44.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:01:44.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:44.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:44.130][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:01:44.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:01:44.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:44.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:44.133][ef$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:01:44.134][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:01:44.135][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:44.136][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:44.137][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:01:44.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:01:44.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:44.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:44.147][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-06-28 16:01:44.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:01:44.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:44.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:44.151][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-06-28 16:01:44.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:01:44.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:44.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:44.154][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-06-28 16:01:44.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:01:44.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:44.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:44.158][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-06-28 16:01:44.159][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:01:44.160][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:44.160][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:44.161][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-06-28 16:01:44.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:01:44.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:44.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:44.171][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:01:44.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:01:44.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:44.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:44.175][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:01:44.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:01:44.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:44.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:44.178][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:01:44.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:01:44.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:44.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:44.182][ef$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:01:44.183][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:01:44.184][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:44.185][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:44.186][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:01:44.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:01:44.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:44.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:44.195][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:01:44.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:01:44.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:44.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:44.199][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:01:44.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:01:44.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:44.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:44.203][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:01:44.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:01:44.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:44.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:44.206][ef$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:01:44.207][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:01:44.208][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:44.209][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:44.210][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:01:44.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:01:44.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:44.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:44.220][ef$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:01:44.221][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:01:44.221][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:44.222][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:44.226][ef$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:01:44.227][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:01:44.228][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:44.229][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:44.236][ef$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:01:44.237][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:01:44.238][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:44.239][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:44.242][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:01:44.243][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:01:44.244][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:44.245][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:44.249][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:01:44.250][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:01:44.251][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:44.251][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:44.255][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:01:44.256][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:01:44.257][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:44.258][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:44.261][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:44.262][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:44.263][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:44.264][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:44.268][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:44.269][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:44.269][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:44.270][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:44.274][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-06-28 16:01:44.275][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:01:44.276][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:44.277][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:44.280][ef$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:01:44.281][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:01:44.282][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:44.283][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:44.287][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:01:44.288][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:01:44.289][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:44.290][ef$get] fields variable is a list.
biodb.INFO [2025-06-28 16:01:44.296][biodb::testThat]
biodb.INFO [2025-06-28 16:01:44.297][biodb::testThat] Running test function test.rt.unit (" RT unit is defined when there is an RT value. ").
biodb.INFO [2025-06-28 16:01:44.297][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-06-28 16:01:44.298][biodb::testThat]
biodb.DEBUG[2025-06-28 16:01:44.300][private$loadEntries] Creating entries from ids [3]: "15440, 2528, 7799".
biodb.DEBUG[2025-06-28 16:01:44.302][conn$getEntryContent] Get ChEBI entry content(s) for 3 id(s)...
fscache.INFO [2025-06-28 16:01:44.305][cch$loadContents] Load 3 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-06-28 16:01:44.312][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/15440.xml.
fscache.DEBUG[2025-06-28 16:01:44.315][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/2528.xml.
fscache.DEBUG[2025-06-28 16:01:44.319][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7799.xml.
biodb.DEBUG[2025-06-28 16:01:44.320][conn$getEntryContent] 3 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-06-28 16:01:44.321][self$createEntryFromContent] Creating ChEBI entries from 3 content(s).
biodb.DEBUG[2025-06-28 16:01:44.322][self$createEntryFromContent] Parsing 3 ChEBI entries.
biodb.DEBUG[2025-06-28 16:01:44.323][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:01:44.324][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:01:44.325][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:01:44.329][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:01:44.330][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:01:44.330][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:01:44.331][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:01:44.333][ef$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:01:44.334][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:01:44.335][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:44.336][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:44.337][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:01:44.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:01:44.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:44.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:44.341][ef$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:01:44.342][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:01:44.343][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:44.344][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:44.345][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:01:44.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:01:44.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:44.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:44.348][ef$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:01:44.349][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:01:44.350][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:44.351][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:44.352][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:01:44.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:01:44.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:44.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:44.356][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:01:44.357][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:01:44.358][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:44.359][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:44.360][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:01:44.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:01:44.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:44.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:44.363][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:01:44.364][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:01:44.365][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:44.366][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:44.367][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:01:44.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:01:44.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:44.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:44.371][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:01:44.372][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:01:44.373][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:44.373][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:44.375][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:01:44.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:01:44.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:44.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:44.378][ef$get] Asked field names are: mass.
biodb.TRACE[2025-06-28 16:01:44.379][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:44.380][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:44.381][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:44.382][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-06-28 16:01:44.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:44.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:44.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:44.386][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:44.387][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:44.388][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:44.388][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:44.389][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:44.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:44.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:44.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:44.393][ef$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:01:44.394][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:01:44.395][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:44.396][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:44.397][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:01:44.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:01:44.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:44.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:44.401][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-06-28 16:01:44.402][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:01:44.407][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:44.408][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:44.409][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-06-28 16:01:44.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:01:44.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:44.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:44.412][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:01:44.413][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:01:44.414][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:44.415][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:44.416][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:01:44.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:01:44.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:44.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:44.420][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:01:44.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:01:44.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:44.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:44.423][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:01:44.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:01:44.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:44.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:44.427][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:01:44.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:01:44.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:44.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:44.430][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:01:44.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:01:44.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:44.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:44.434][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:01:44.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:01:44.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:44.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:44.438][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:01:44.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:01:44.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:44.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:44.441][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:01:44.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:01:44.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:44.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:01:44.445][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:01:44.446][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:01:44.446][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:01:44.451][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:01:44.451][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:01:44.452][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:01:44.453][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:01:44.455][ef$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:01:44.456][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:01:44.457][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:44.458][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:44.459][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:01:44.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:01:44.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:44.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:44.462][ef$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:01:44.463][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:01:44.464][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:44.465][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:44.466][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:01:44.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:01:44.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:44.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:44.470][ef$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:01:44.471][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:01:44.472][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:44.473][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:44.474][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:01:44.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:01:44.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:44.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:44.478][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:01:44.479][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:01:44.479][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:44.480][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:44.481][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:01:44.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:01:44.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:44.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:44.485][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:01:44.486][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:01:44.487][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:44.488][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:44.489][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:01:44.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:01:44.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:44.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:44.492][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:01:44.493][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:01:44.494][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:44.495][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:44.496][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:01:44.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:01:44.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:44.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:44.500][ef$get] Asked field names are: mass.
biodb.TRACE[2025-06-28 16:01:44.501][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:44.502][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:44.502][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:44.504][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-06-28 16:01:44.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:44.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:44.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:44.507][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:44.508][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:44.509][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:44.510][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:44.511][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:44.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:44.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:44.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:44.515][ef$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:01:44.516][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:01:44.516][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:44.517][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:44.518][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:01:44.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:01:44.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:44.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:44.522][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-06-28 16:01:44.523][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:01:44.524][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:44.525][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:44.526][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-06-28 16:01:44.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:01:44.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:44.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:44.530][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:01:44.530][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:01:44.531][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:44.532][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:44.533][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:01:44.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:01:44.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:44.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:44.537][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:01:44.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:01:44.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:44.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:44.541][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:01:44.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:01:44.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:44.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:44.544][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:01:44.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:01:44.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:44.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:44.548][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:01:44.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:01:44.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:44.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:44.551][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:01:44.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:01:44.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:44.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:44.555][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:01:44.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:01:44.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:44.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:44.559][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:01:44.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:01:44.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:44.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:01:44.563][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:01:44.564][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:01:44.564][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:01:44.572][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:01:44.573][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:01:44.574][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:01:44.575][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:01:44.577][ef$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:01:44.578][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:01:44.578][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:44.579][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:44.580][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:01:44.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:01:44.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:44.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:44.584][ef$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:01:44.585][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:01:44.586][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:44.587][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:44.588][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:01:44.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:01:44.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:44.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:44.591][ef$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:01:44.592][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:01:44.593][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:44.594][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:44.595][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:01:44.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:01:44.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:44.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:44.599][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:01:44.599][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:01:44.600][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:44.601][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:44.602][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:01:44.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:01:44.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:44.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:44.606][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:01:44.607][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:01:44.608][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:44.609][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:44.610][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:01:44.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:01:44.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:44.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:44.613][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:01:44.614][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:01:44.615][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:44.616][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:44.617][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:01:44.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:01:44.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:44.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:44.621][ef$get] Asked field names are: mass.
biodb.TRACE[2025-06-28 16:01:44.622][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:44.623][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:44.624][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:44.625][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-06-28 16:01:44.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:44.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:44.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:44.628][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:44.629][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:44.630][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:44.631][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:44.632][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:44.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:44.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:44.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:44.636][ef$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:01:44.637][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:01:44.638][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:44.639][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:44.640][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:01:44.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:01:44.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:44.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:44.644][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-06-28 16:01:44.644][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:01:44.645][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:44.646][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:44.647][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-06-28 16:01:44.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:01:44.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:44.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:44.651][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:01:44.652][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:01:44.653][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:44.654][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:44.655][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:01:44.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:01:44.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:44.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:44.658][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:01:44.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:01:44.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:44.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:44.662][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:01:44.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:01:44.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:44.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:44.666][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:01:44.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:01:44.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:44.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:44.669][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:01:44.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:01:44.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:44.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:44.673][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:01:44.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:01:44.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:44.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:44.677][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:01:44.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:01:44.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:44.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:44.680][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:01:44.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:01:44.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:44.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:44.684][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:01:44.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:01:44.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:44.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:44.688][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:01:44.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:01:44.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:44.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:44.691][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:01:44.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:01:44.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:44.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:44.695][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:01:44.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:01:44.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:44.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:44.698][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:01:44.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:01:44.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:44.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:44.702][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:01:44.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:01:44.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:44.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:44.706][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:01:44.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:01:44.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:44.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:44.709][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:01:44.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:01:44.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:44.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:44.713][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:01:44.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:01:44.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:44.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:01:44.717][self$createEntryFromContent] Accession numbers: 15440, 2528, 7799.
biodb.TRACE[2025-06-28 16:01:44.718][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2025-06-28 16:01:44.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2025-06-28 16:01:44.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:44.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:44.721][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2025-06-28 16:01:44.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2025-06-28 16:01:44.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:44.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:44.725][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2025-06-28 16:01:44.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2025-06-28 16:01:44.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:44.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:44.736][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2025-06-28 16:01:44.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2025-06-28 16:01:44.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:44.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:44.740][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2025-06-28 16:01:44.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2025-06-28 16:01:44.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:44.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:44.743][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2025-06-28 16:01:44.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2025-06-28 16:01:44.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:44.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:44.750][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2025-06-28 16:01:44.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2025-06-28 16:01:44.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:44.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:44.754][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2025-06-28 16:01:44.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2025-06-28 16:01:44.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:44.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:44.757][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2025-06-28 16:01:44.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2025-06-28 16:01:44.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:44.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2025-06-28 16:01:44.766][biodb::testThat]
biodb.INFO [2025-06-28 16:01:44.767][biodb::testThat] Running test function test.searchForEntries (" We can search for an entry by searchable field ").
biodb.INFO [2025-06-28 16:01:44.768][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-06-28 16:01:44.769][biodb::testThat]
biodb.TRACE[2025-06-28 16:01:44.772][ef$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:01:44.773][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:01:44.773][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:44.774][ef$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:01:44.775][function(conn, opt)] Testing searchForEntries() with entry "15440" and field "name".
biodb.TRACE[2025-06-28 16:01:44.798][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:01:44.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:01:44.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:44.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:44.802][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:01:44.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:01:44.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:44.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:44.805][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:01:44.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:01:44.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:44.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:01:44.811][function(conn, opt)] With value "squalene".
sched.DEBUG[2025-06-28 16:01:44.816][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/webservice?wsdl".
fscache.INFO [2025-06-28 16:01:44.835][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-06-28 16:01:44.841][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/a2ed8f44d213d85be0d7e9a0448c78ad.content.
sched.DEBUG[2025-06-28 16:01:44.842][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
sched.DEBUG[2025-06-28 16:01:44.860][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-06-28 16:01:44.892][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-06-28 16:01:44.896][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/80cdc67a2a6332dd4ceb98b7656194b9.content.
sched.DEBUG[2025-06-28 16:01:44.897][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-06-28 16:01:44.899][function(conn, opt)] With found IDs [1]: "15440".
biodb.TRACE[2025-06-28 16:01:44.909][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:44.910][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:44.910][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:44.911][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:44.912][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:44.913][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:44.914][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:44.915][ef$get] fields variable is a list.
biodb.INFO [2025-06-28 16:01:44.918][biodb::testThat]
biodb.INFO [2025-06-28 16:01:44.919][biodb::testThat] Running test function test.searchByName (" We can search for an entry by name. ").
biodb.INFO [2025-06-28 16:01:44.920][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-06-28 16:01:44.921][biodb::testThat]
biodb.TRACE[2025-06-28 16:01:44.942][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:01:44.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:01:44.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:44.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:44.946][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:01:44.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:01:44.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:44.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:44.950][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:01:44.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:01:44.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:44.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
sched.DEBUG[2025-06-28 16:01:45.003][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-06-28 16:01:45.005][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-06-28 16:01:45.008][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/80cdc67a2a6332dd4ceb98b7656194b9.content.
sched.DEBUG[2025-06-28 16:01:45.009][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.INFO [2025-06-28 16:01:45.022][biodb::testThat]
biodb.INFO [2025-06-28 16:01:45.023][biodb::testThat] Running test function testEntryLoading (" We can load an entry from the database. ").
biodb.INFO [2025-06-28 16:01:45.024][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-06-28 16:01:45.025][biodb::testThat]
biodb.TRACE[2025-06-28 16:01:45.033][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:01:45.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:01:45.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:45.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:45.041][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:01:45.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:01:45.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:45.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:45.044][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:01:45.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:01:45.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:45.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:45.048][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:01:45.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:01:45.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:45.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:45.051][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:45.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:45.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:45.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:45.055][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:45.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:45.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:45.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:45.059][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-06-28 16:01:45.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-06-28 16:01:45.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:45.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:45.062][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-06-28 16:01:45.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-06-28 16:01:45.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:45.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:45.066][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-06-28 16:01:45.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-06-28 16:01:45.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:45.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:45.069][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-06-28 16:01:45.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-06-28 16:01:45.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:45.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:45.081][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:01:45.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:01:45.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:45.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:45.085][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:01:45.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:01:45.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:45.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:45.088][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:01:45.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:01:45.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:45.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:45.092][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:01:45.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:01:45.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:45.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:45.096][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:45.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:45.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:45.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:45.099][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:45.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:45.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:45.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:45.103][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-06-28 16:01:45.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-06-28 16:01:45.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:45.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:45.106][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-06-28 16:01:45.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-06-28 16:01:45.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:45.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:45.110][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-06-28 16:01:45.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-06-28 16:01:45.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:45.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:45.114][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-06-28 16:01:45.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-06-28 16:01:45.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:45.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2025-06-28 16:01:45.122][biodb::testThat]
biodb.INFO [2025-06-28 16:01:45.123][biodb::testThat] Running test function test.entry.page.url (" We can get a URL pointing to the entry page. ").
biodb.INFO [2025-06-28 16:01:45.124][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-06-28 16:01:45.125][biodb::testThat]
biodb.INFO [2025-06-28 16:01:45.132][biodb::testThat]
biodb.INFO [2025-06-28 16:01:45.133][biodb::testThat] Running test function test.entry.image.url (" We can get a URL pointing to the entry image. ").
biodb.INFO [2025-06-28 16:01:45.134][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-06-28 16:01:45.135][biodb::testThat]
biodb.INFO [2025-06-28 16:01:45.141][biodb::testThat]
biodb.INFO [2025-06-28 16:01:45.142][biodb::testThat] Running test function test.entry.page.url.download (" The entry page URL can be downloaded. ").
biodb.INFO [2025-06-28 16:01:45.143][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-06-28 16:01:45.144][biodb::testThat]
biodb.DEBUG[2025-06-28 16:01:45.147][function(conn, opt)] Trying to download "https://www.ebi.ac.uk/chebi/searchId.do?chebiId=15440".
sched.TRACE[2025-06-28 16:01:46.300][try_get_rcurl_content] Using RCurl package for sending request (https://www.ebi.ac.uk/chebi/searchId.do?chebiId=15440).
biodb.INFO [2025-06-28 16:01:47.740][biodb::testThat]
biodb.INFO [2025-06-28 16:01:47.743][biodb::testThat] Running test function test.entry.image.url.download (" The entry image URL can be downloaded. ").
biodb.INFO [2025-06-28 16:01:47.744][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-06-28 16:01:47.746][biodb::testThat]
biodb.TRACE[2025-06-28 16:01:47.755][ef$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:01:47.757][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:01:47.758][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:47.760][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:47.761][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:47.763][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:47.764][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:47.765][ef$get] fields variable is a list.
biodb.INFO [2025-06-28 16:01:47.768][biodb::testThat]
biodb.INFO [2025-06-28 16:01:47.769][biodb::testThat] Running test function test.searchCompound (" We can search for a compound ").
biodb.INFO [2025-06-28 16:01:47.770][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-06-28 16:01:47.771][biodb::testThat]
biodb.TRACE[2025-06-28 16:01:47.782][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:01:47.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:01:47.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:47.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:47.794][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:01:47.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:01:47.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:47.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:47.799][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:01:47.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:01:47.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:47.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
sched.DEBUG[2025-06-28 16:01:47.892][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-06-28 16:01:47.894][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-06-28 16:01:47.897][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/80cdc67a2a6332dd4ceb98b7656194b9.content.
sched.DEBUG[2025-06-28 16:01:47.898][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
sched.DEBUG[2025-06-28 16:01:47.978][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-06-28 16:01:47.981][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-06-28 16:01:47.984][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/80cdc67a2a6332dd4ceb98b7656194b9.content.
sched.DEBUG[2025-06-28 16:01:47.985][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.TRACE[2025-06-28 16:01:47.997][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-06-28 16:01:47.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-06-28 16:01:47.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:47.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:48.004][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:48.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:48.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:48.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:48.007][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:48.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:48.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:48.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:48.011][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:48.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:48.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:48.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:48.015][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:48.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:48.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:48.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:48.018][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:48.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:48.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:48.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
sched.DEBUG[2025-06-28 16:01:48.028][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-06-28 16:01:48.031][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-06-28 16:01:48.033][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/8fc54eee7e982ce554bee8000d8203f7.content.
sched.DEBUG[2025-06-28 16:01:48.034][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-06-28 16:01:48.036][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:01:48.036][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:01:48.037][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:01:48.041][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:01:48.042][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:01:48.043][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:01:48.044][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-28 16:01:48.045][private$loadEntries] Creating entries from ids [1]: "192288".
biodb.DEBUG[2025-06-28 16:01:48.093][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-06-28 16:01:48.094][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-06-28 16:01:48.098][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/192288.xml.
biodb.DEBUG[2025-06-28 16:01:48.099][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-06-28 16:01:48.100][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-06-28 16:01:48.101][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-06-28 16:01:48.102][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:01:48.103][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:01:48.104][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:01:48.108][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:01:48.109][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:01:48.110][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:01:48.111][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:01:48.113][ef$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:01:48.114][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:01:48.115][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:48.116][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:48.117][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:01:48.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:01:48.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:48.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:48.121][ef$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:01:48.122][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:01:48.123][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:48.124][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:48.125][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:01:48.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:01:48.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:48.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:48.129][ef$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:01:48.130][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:01:48.131][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:48.131][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:48.133][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:01:48.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:01:48.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:48.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:48.137][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:01:48.138][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:01:48.138][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:48.139][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:48.140][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:01:48.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:01:48.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:48.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:48.144][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:01:48.145][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:01:48.146][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:48.147][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:48.148][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:01:48.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:01:48.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:48.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:48.152][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:01:48.153][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:01:48.154][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:48.155][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:48.156][ef$get] Asked field names are: mass.
biodb.TRACE[2025-06-28 16:01:48.157][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:48.157][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:48.158][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:48.159][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-06-28 16:01:48.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:48.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:48.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:48.163][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:48.164][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:48.165][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:48.166][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:48.167][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:48.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:48.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:48.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:48.171][ef$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:01:48.172][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:01:48.172][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:48.173][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:48.175][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:01:48.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:01:48.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:48.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:48.178][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-06-28 16:01:48.179][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:01:48.180][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:48.181][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:48.182][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-06-28 16:01:48.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:01:48.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:48.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:48.186][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:01:48.187][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:01:48.188][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:48.188][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:48.189][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:01:48.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:01:48.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:48.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:48.193][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:01:48.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:01:48.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:48.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:48.197][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:01:48.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:01:48.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:48.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:48.201][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:01:48.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:01:48.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:48.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:48.204][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:01:48.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:01:48.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:48.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:48.208][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:01:48.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:01:48.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:48.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:48.211][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:01:48.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:01:48.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:48.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:48.215][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:01:48.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:01:48.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:48.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:48.219][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:01:48.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:01:48.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:48.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:48.226][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:01:48.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:01:48.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:48.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:48.230][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:01:48.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:01:48.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:48.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:01:48.233][self$createEntryFromContent] Accession numbers: 192288.
biodb.TRACE[2025-06-28 16:01:48.242][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:48.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:48.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:48.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:48.246][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:48.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:48.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:48.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:48.249][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:48.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:48.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:48.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
sched.DEBUG[2025-06-28 16:01:48.254][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-06-28 16:01:48.256][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-06-28 16:01:48.258][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/6def615835d7c1dfccd5a5f135bd2f9d.content.
sched.DEBUG[2025-06-28 16:01:48.259][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-06-28 16:01:48.273][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:01:48.274][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:01:48.274][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:01:48.279][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:01:48.279][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:01:48.280][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:01:48.281][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:01:48.282][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:48.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:48.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:48.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:48.286][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:48.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:48.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:48.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:48.289][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:48.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:48.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:48.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:01:48.293][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:01:48.294][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:01:48.295][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:01:48.299][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:01:48.300][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:01:48.300][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:01:48.301][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-28 16:01:48.302][private$loadEntries] Creating entries from ids [1]: "209892".
biodb.DEBUG[2025-06-28 16:01:48.303][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-06-28 16:01:48.304][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-06-28 16:01:48.308][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/209892.xml.
biodb.DEBUG[2025-06-28 16:01:48.309][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-06-28 16:01:48.310][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-06-28 16:01:48.311][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-06-28 16:01:48.312][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:01:48.313][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:01:48.314][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:01:48.318][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:01:48.319][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:01:48.319][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:01:48.320][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:01:48.322][ef$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:01:48.323][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:01:48.324][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:48.325][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:48.326][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:01:48.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:01:48.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:48.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:48.330][ef$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:01:48.331][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:01:48.332][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:48.332][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:48.334][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:01:48.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:01:48.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:48.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:48.337][ef$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:01:48.338][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:01:48.339][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:48.340][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:48.341][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:01:48.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:01:48.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:48.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:48.345][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:01:48.346][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:01:48.347][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:48.348][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:48.349][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:01:48.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:01:48.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:48.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:48.352][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:01:48.353][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:01:48.354][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:48.355][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:48.356][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:01:48.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:01:48.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:48.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:48.360][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:01:48.361][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:01:48.362][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:48.363][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:48.364][ef$get] Asked field names are: mass.
biodb.TRACE[2025-06-28 16:01:48.369][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:48.370][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:48.370][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:48.372][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-06-28 16:01:48.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:48.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:48.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:48.375][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:48.376][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:48.377][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:48.378][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:48.379][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:48.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:48.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:48.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:48.383][ef$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:01:48.383][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:01:48.384][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:48.385][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:48.386][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:01:48.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:01:48.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:48.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:48.390][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-06-28 16:01:48.391][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:01:48.392][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:48.393][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:48.394][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-06-28 16:01:48.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:01:48.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:48.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:48.397][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:01:48.398][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:01:48.399][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:48.400][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:48.401][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:01:48.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:01:48.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:48.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:48.405][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:01:48.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:01:48.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:48.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:48.408][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:01:48.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:01:48.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:48.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:48.412][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:01:48.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:01:48.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:48.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:48.416][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:01:48.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:01:48.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:48.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:48.419][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:01:48.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:01:48.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:48.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:48.423][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:01:48.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:01:48.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:48.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:48.427][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:01:48.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:01:48.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:48.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:48.430][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:01:48.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:01:48.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:48.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:48.434][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:01:48.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:01:48.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:48.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:48.438][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:01:48.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:01:48.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:48.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:01:48.441][self$createEntryFromContent] Accession numbers: 209892.
biodb.TRACE[2025-06-28 16:01:48.442][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:48.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:48.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:48.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:48.446][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:48.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:48.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:48.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:48.449][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:48.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:48.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:48.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
sched.DEBUG[2025-06-28 16:01:48.468][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-06-28 16:01:48.470][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-06-28 16:01:48.474][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/80cdc67a2a6332dd4ceb98b7656194b9.content.
sched.DEBUG[2025-06-28 16:01:48.475][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-06-28 16:01:48.477][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:01:48.478][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:01:48.479][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:01:48.482][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:01:48.483][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:01:48.484][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:01:48.485][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:01:48.486][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:48.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:48.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:48.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:48.490][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:48.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:48.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:48.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:48.493][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:48.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:48.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:48.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:01:48.497][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:01:48.498][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:01:48.499][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:01:48.502][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:01:48.503][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:01:48.504][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:01:48.505][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-28 16:01:48.506][private$loadEntries] Creating entries from ids [1]: "26747".
biodb.DEBUG[2025-06-28 16:01:48.507][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-06-28 16:01:48.508][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-06-28 16:01:48.511][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/26747.xml.
biodb.DEBUG[2025-06-28 16:01:48.516][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-06-28 16:01:48.517][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-06-28 16:01:48.518][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-06-28 16:01:48.520][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:01:48.521][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:01:48.521][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:01:48.525][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:01:48.526][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:01:48.527][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:01:48.528][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:01:48.530][ef$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:01:48.531][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:01:48.532][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:48.532][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:48.533][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:01:48.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:01:48.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:48.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:48.537][ef$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:01:48.538][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:01:48.539][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:48.540][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:48.541][ef$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:01:48.542][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:01:48.543][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:48.543][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:48.545][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:01:48.546][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:01:48.547][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:48.547][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:48.549][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:01:48.550][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:01:48.550][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:48.551][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:48.552][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:01:48.553][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:01:48.554][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:48.555][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:48.556][ef$get] Asked field names are: mass.
biodb.TRACE[2025-06-28 16:01:48.557][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:48.558][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:48.559][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:48.560][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:48.561][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:48.562][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:48.563][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:48.564][ef$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:01:48.565][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:01:48.566][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:48.567][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:48.568][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:01:48.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:01:48.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:48.570][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:48.571][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-06-28 16:01:48.572][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:01:48.573][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:48.574][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:48.575][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-06-28 16:01:48.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:01:48.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:48.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:48.579][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:01:48.580][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:01:48.581][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:48.582][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:48.583][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:01:48.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:01:48.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:48.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:48.586][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:01:48.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:01:48.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:48.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:48.590][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:01:48.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:01:48.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:48.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:48.594][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:01:48.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:01:48.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:48.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:48.597][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:01:48.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:01:48.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:48.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:48.601][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:01:48.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:01:48.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:48.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:48.605][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:01:48.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:01:48.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:48.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:48.608][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:01:48.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:01:48.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:48.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:48.612][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:01:48.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:01:48.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:48.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:48.616][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:01:48.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:01:48.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:48.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:01:48.619][self$createEntryFromContent] Accession numbers: 26747.
biodb.TRACE[2025-06-28 16:01:48.620][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:48.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:48.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:48.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:48.624][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:48.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:48.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:48.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:48.627][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:48.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:48.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:48.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:48.631][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:48.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:48.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:48.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:48.635][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:48.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:48.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:48.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:01:48.638][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:01:48.639][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:01:48.640][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:01:48.644][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:01:48.645][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:01:48.646][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:01:48.647][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-28 16:01:48.648][private$loadEntries] Creating entries from ids [1]: "59285".
biodb.DEBUG[2025-06-28 16:01:48.649][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-06-28 16:01:48.650][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-06-28 16:01:48.654][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/59285.xml.
biodb.DEBUG[2025-06-28 16:01:48.655][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-06-28 16:01:48.656][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-06-28 16:01:48.657][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-06-28 16:01:48.659][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:01:48.659][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:01:48.664][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:01:48.668][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:01:48.669][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:01:48.670][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:01:48.670][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:01:48.673][ef$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:01:48.674][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:01:48.674][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:48.675][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:48.676][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:01:48.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:01:48.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:48.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:48.680][ef$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:01:48.681][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:01:48.682][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:48.683][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:48.684][ef$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:01:48.685][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:01:48.686][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:48.686][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:48.688][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:01:48.689][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:01:48.689][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:48.690][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:48.691][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:01:48.692][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:01:48.693][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:48.694][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:48.695][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:01:48.696][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:01:48.697][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:48.698][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:48.699][ef$get] Asked field names are: mass.
biodb.TRACE[2025-06-28 16:01:48.700][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:48.701][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:48.702][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:48.703][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:48.704][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:48.704][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:48.705][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:48.706][ef$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:01:48.707][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:01:48.708][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:48.709][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:48.711][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:01:48.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:01:48.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:48.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:48.714][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-06-28 16:01:48.715][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:01:48.716][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:48.717][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:48.718][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-06-28 16:01:48.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:01:48.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:48.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:48.722][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:01:48.723][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:01:48.724][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:48.725][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:48.726][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:01:48.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:01:48.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:48.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:48.730][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:01:48.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:01:48.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:48.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:48.733][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:01:48.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:01:48.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:48.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:48.737][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:01:48.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:01:48.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:48.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:48.741][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:01:48.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:01:48.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:48.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:48.744][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:01:48.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:01:48.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:48.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:48.748][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:01:48.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:01:48.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:48.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:48.752][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:01:48.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:01:48.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:48.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:48.755][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:01:48.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:01:48.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:48.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:48.759][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:01:48.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:01:48.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:48.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:01:48.763][self$createEntryFromContent] Accession numbers: 59285.
biodb.TRACE[2025-06-28 16:01:48.764][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:48.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:48.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:48.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:48.767][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:48.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:48.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:48.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:48.771][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:48.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:48.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:48.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:48.774][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:48.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:48.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:48.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:48.778][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:48.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:48.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:48.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:01:48.782][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:01:48.783][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:01:48.784][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:01:48.788][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:01:48.789][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:01:48.789][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:01:48.790][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-28 16:01:48.791][private$loadEntries] Creating entries from ids [1]: "75174".
biodb.DEBUG[2025-06-28 16:01:48.792][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-06-28 16:01:48.793][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-06-28 16:01:48.797][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/75174.xml.
biodb.DEBUG[2025-06-28 16:01:48.798][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-06-28 16:01:48.799][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-06-28 16:01:48.800][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-06-28 16:01:48.802][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:01:48.803][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:01:48.803][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:01:48.824][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:01:48.825][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:01:48.826][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:01:48.827][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:01:48.829][ef$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:01:48.830][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:01:48.831][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:48.832][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:48.833][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:01:48.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:01:48.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:48.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:48.836][ef$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:01:48.837][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:01:48.838][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:48.839][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:48.840][ef$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:01:48.841][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:01:48.842][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:48.843][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:48.844][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:01:48.845][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:01:48.846][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:48.847][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:48.848][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:01:48.849][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:01:48.849][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:48.850][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:48.851][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:01:48.852][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:01:48.853][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:48.854][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:48.855][ef$get] Asked field names are: mass.
biodb.TRACE[2025-06-28 16:01:48.856][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:48.857][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:48.858][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:48.859][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:48.860][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:48.861][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:48.862][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:48.863][ef$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:01:48.864][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:01:48.865][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:48.865][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:48.867][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:01:48.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:01:48.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:48.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:48.871][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-06-28 16:01:48.872][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:01:48.873][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:48.873][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:48.875][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-06-28 16:01:48.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:01:48.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:48.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:48.878][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:01:48.879][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:01:48.880][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:48.881][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:48.882][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:01:48.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:01:48.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:48.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:48.886][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:01:48.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:01:48.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:48.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:48.889][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:01:48.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:01:48.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:48.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:48.893][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:01:48.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:01:48.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:48.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:48.897][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:01:48.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:01:48.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:48.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:48.900][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:01:48.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:01:48.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:48.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:48.904][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:01:48.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:01:48.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:48.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:48.908][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:01:48.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:01:48.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:48.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:48.911][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:01:48.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:01:48.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:48.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:48.915][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:01:48.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:01:48.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:48.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:01:48.918][self$createEntryFromContent] Accession numbers: 75174.
biodb.TRACE[2025-06-28 16:01:48.919][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:48.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:48.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:48.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:48.923][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:48.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:48.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:48.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:48.927][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:48.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:48.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:48.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:48.930][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:48.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:48.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:48.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:48.934][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:48.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:48.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:48.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:01:48.938][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:01:48.939][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:01:48.939][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:01:48.944][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:01:48.945][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:01:48.945][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:01:48.946][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-28 16:01:48.947][private$loadEntries] Creating entries from ids [1]: "15441".
biodb.DEBUG[2025-06-28 16:01:48.948][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-06-28 16:01:48.950][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-06-28 16:01:48.955][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/15441.xml.
biodb.DEBUG[2025-06-28 16:01:48.956][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-06-28 16:01:48.957][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-06-28 16:01:48.958][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-06-28 16:01:48.959][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:01:48.960][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:01:48.961][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:01:48.965][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:01:48.966][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:01:48.967][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:01:48.968][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:01:48.970][ef$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:01:48.971][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:01:48.975][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:48.976][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:48.978][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:01:48.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:01:48.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:48.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:48.981][ef$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:01:48.982][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:01:48.983][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:48.984][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:48.985][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:01:48.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:01:48.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:48.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:48.989][ef$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:01:48.990][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:01:48.991][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:48.991][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:48.993][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:01:48.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:01:48.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:48.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:48.996][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:01:48.997][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:01:48.998][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:48.999][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:49.000][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:01:49.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:01:49.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:49.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:49.004][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:01:49.005][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:01:49.005][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:49.006][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:49.007][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:01:49.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:01:49.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:49.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:49.011][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:01:49.012][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:01:49.013][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:49.014][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:49.015][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:01:49.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:01:49.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:49.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:49.019][ef$get] Asked field names are: mass.
biodb.TRACE[2025-06-28 16:01:49.020][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:49.020][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:49.021][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:49.022][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-06-28 16:01:49.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:49.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:49.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:49.026][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:49.027][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:49.028][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:49.029][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:49.030][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:49.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:49.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:49.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:49.034][ef$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:01:49.035][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:01:49.035][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:49.036][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:49.038][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:01:49.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:01:49.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:49.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:49.041][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-06-28 16:01:49.042][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:01:49.043][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:49.044][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:49.045][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-06-28 16:01:49.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:01:49.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:49.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:49.049][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:01:49.050][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:01:49.051][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:49.052][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:49.053][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:01:49.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:01:49.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:49.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:49.056][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:01:49.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:01:49.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:49.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:49.060][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:01:49.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:01:49.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:49.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:49.064][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:01:49.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:01:49.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:49.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:49.067][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:01:49.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:01:49.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:49.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:49.071][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:01:49.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:01:49.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:49.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:49.075][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:01:49.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:01:49.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:49.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:49.078][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:01:49.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:01:49.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:49.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:49.082][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:01:49.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:01:49.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:49.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:49.086][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:01:49.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:01:49.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:49.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:49.089][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:01:49.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:01:49.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:49.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:01:49.093][self$createEntryFromContent] Accession numbers: 15441.
biodb.TRACE[2025-06-28 16:01:49.094][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:49.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:49.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:49.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:49.098][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:49.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:49.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:49.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:49.101][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:49.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:49.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:49.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:01:49.105][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:01:49.106][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:01:49.106][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:01:49.111][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:01:49.111][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:01:49.112][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:01:49.113][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-28 16:01:49.114][private$loadEntries] Creating entries from ids [1]: "15442".
biodb.DEBUG[2025-06-28 16:01:49.115][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-06-28 16:01:49.116][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-06-28 16:01:49.121][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/15442.xml.
biodb.DEBUG[2025-06-28 16:01:49.126][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-06-28 16:01:49.127][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-06-28 16:01:49.128][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-06-28 16:01:49.129][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:01:49.130][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:01:49.131][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:01:49.135][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:01:49.136][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:01:49.137][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:01:49.137][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:01:49.140][ef$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:01:49.140][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:01:49.141][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:49.142][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:49.143][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:01:49.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:01:49.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:49.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:49.147][ef$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:01:49.148][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:01:49.149][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:49.150][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:49.151][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:01:49.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:01:49.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:49.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:49.154][ef$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:01:49.155][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:01:49.156][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:49.157][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:49.158][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:01:49.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:01:49.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:49.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:49.162][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:01:49.163][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:01:49.164][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:49.165][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:49.166][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:01:49.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:01:49.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:49.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:49.170][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:01:49.171][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:01:49.171][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:49.172][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:49.173][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:01:49.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:01:49.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:49.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:49.177][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:01:49.178][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:01:49.179][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:49.180][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:49.181][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:01:49.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:01:49.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:49.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:49.185][ef$get] Asked field names are: mass.
biodb.TRACE[2025-06-28 16:01:49.185][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:49.186][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:49.187][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:49.188][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-06-28 16:01:49.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:49.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:49.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:49.192][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:49.193][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:49.194][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:49.195][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:49.196][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:49.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:49.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:49.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:49.199][ef$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:01:49.200][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:01:49.201][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:49.202][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:49.203][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:01:49.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:01:49.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:49.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:49.207][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-06-28 16:01:49.208][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:01:49.209][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:49.210][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:49.211][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-06-28 16:01:49.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:01:49.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:49.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:49.215][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:01:49.215][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:01:49.216][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:49.217][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:49.218][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:01:49.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:01:49.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:49.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:49.222][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:01:49.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:01:49.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:49.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:49.226][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:01:49.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:01:49.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:49.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:49.229][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:01:49.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:01:49.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:49.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:49.233][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:01:49.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:01:49.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:49.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:49.237][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:01:49.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:01:49.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:49.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:49.240][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:01:49.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:01:49.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:49.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:49.244][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:01:49.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:01:49.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:49.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:49.248][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:01:49.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:01:49.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:49.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:49.251][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:01:49.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:01:49.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:49.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:49.255][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:01:49.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:01:49.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:49.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:01:49.259][self$createEntryFromContent] Accession numbers: 15442.
biodb.TRACE[2025-06-28 16:01:49.260][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:49.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:49.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:49.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:49.263][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:49.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:49.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:49.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:49.267][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:49.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:49.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:49.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:01:49.274][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:01:49.275][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:01:49.276][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:01:49.280][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:01:49.281][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:01:49.282][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:01:49.283][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-28 16:01:49.284][private$loadEntries] Creating entries from ids [1]: "57310".
biodb.DEBUG[2025-06-28 16:01:49.284][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-06-28 16:01:49.286][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-06-28 16:01:49.290][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/57310.xml.
biodb.DEBUG[2025-06-28 16:01:49.291][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-06-28 16:01:49.292][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-06-28 16:01:49.293][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-06-28 16:01:49.294][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:01:49.295][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:01:49.296][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:01:49.300][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:01:49.301][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:01:49.301][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:01:49.302][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:01:49.304][ef$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:01:49.305][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:01:49.306][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:49.307][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:49.308][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:01:49.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:01:49.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:49.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:49.312][ef$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:01:49.313][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:01:49.313][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:49.314][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:49.315][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:01:49.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:01:49.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:49.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:49.319][ef$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:01:49.320][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:01:49.321][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:49.322][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:49.323][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:01:49.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:01:49.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:49.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:49.327][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:01:49.328][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:01:49.329][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:49.329][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:49.331][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:01:49.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:01:49.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:49.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:49.334][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:01:49.335][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:01:49.336][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:49.337][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:49.338][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:01:49.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:01:49.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:49.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:49.342][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:01:49.343][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:01:49.344][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:49.344][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:49.345][ef$get] Asked field names are: mass.
biodb.TRACE[2025-06-28 16:01:49.346][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:49.347][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:49.348][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:49.349][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-06-28 16:01:49.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:49.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:49.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:49.353][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:49.354][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:49.355][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:49.356][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:49.357][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:49.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:49.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:49.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:49.360][ef$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:01:49.361][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:01:49.362][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:49.363][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:49.364][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:01:49.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:01:49.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:49.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:49.368][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-06-28 16:01:49.369][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:01:49.370][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:49.371][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:49.372][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-06-28 16:01:49.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:01:49.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:49.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:49.376][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:01:49.377][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:01:49.377][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:49.378][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:49.379][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:01:49.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:01:49.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:49.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:49.383][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:01:49.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:01:49.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:49.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:49.387][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:01:49.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:01:49.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:49.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:49.391][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:01:49.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:01:49.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:49.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:49.394][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:01:49.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:01:49.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:49.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:49.398][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:01:49.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:01:49.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:49.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:49.402][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:01:49.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:01:49.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:49.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:49.405][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:01:49.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:01:49.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:49.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:49.409][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:01:49.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:01:49.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:49.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:49.413][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:01:49.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:01:49.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:49.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:49.416][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:01:49.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:01:49.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:49.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:01:49.424][self$createEntryFromContent] Accession numbers: 57310.
biodb.TRACE[2025-06-28 16:01:49.425][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:49.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:49.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:49.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:49.429][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:49.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:49.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:49.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:49.432][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:49.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:49.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:49.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:01:49.436][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:01:49.437][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:01:49.438][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:01:49.442][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:01:49.443][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:01:49.443][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:01:49.444][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-28 16:01:49.445][private$loadEntries] Creating entries from ids [1]: "66216".
biodb.DEBUG[2025-06-28 16:01:49.446][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-06-28 16:01:49.447][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-06-28 16:01:49.452][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/66216.xml.
biodb.DEBUG[2025-06-28 16:01:49.453][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-06-28 16:01:49.454][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-06-28 16:01:49.455][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-06-28 16:01:49.456][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:01:49.457][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:01:49.458][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:01:49.462][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:01:49.463][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:01:49.464][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:01:49.464][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:01:49.467][ef$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:01:49.468][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:01:49.469][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:49.469][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:49.471][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:01:49.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:01:49.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:49.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:49.474][ef$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:01:49.475][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:01:49.476][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:49.477][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:49.478][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:01:49.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:01:49.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:49.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:49.482][ef$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:01:49.483][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:01:49.484][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:49.485][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:49.486][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:01:49.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:01:49.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:49.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:49.489][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:01:49.490][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:01:49.491][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:49.492][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:49.493][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:01:49.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:01:49.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:49.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:49.497][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:01:49.498][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:01:49.499][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:49.500][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:49.501][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:01:49.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:01:49.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:49.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:49.504][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:01:49.505][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:01:49.506][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:49.507][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:49.508][ef$get] Asked field names are: mass.
biodb.TRACE[2025-06-28 16:01:49.509][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:49.510][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:49.511][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:49.512][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-06-28 16:01:49.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:49.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:49.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:49.516][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:49.517][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:49.517][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:49.518][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:49.519][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:49.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:49.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:49.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:49.523][ef$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:01:49.524][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:01:49.525][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:49.526][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:49.527][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:01:49.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:01:49.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:49.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:49.531][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-06-28 16:01:49.532][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:01:49.533][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:49.534][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:49.535][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-06-28 16:01:49.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:01:49.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:49.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:49.538][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:01:49.539][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:01:49.540][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:49.541][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:49.542][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:01:49.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:01:49.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:49.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:49.546][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:01:49.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:01:49.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:49.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:49.550][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:01:49.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:01:49.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:49.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:49.553][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:01:49.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:01:49.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:49.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:49.557][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:01:49.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:01:49.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:49.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:49.560][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:01:49.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:01:49.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:49.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:49.564][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:01:49.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:01:49.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:49.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:49.571][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:01:49.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:01:49.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:49.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:49.575][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:01:49.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:01:49.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:49.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:49.579][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:01:49.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:01:49.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:49.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:49.583][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:01:49.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:01:49.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:49.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:01:49.586][self$createEntryFromContent] Accession numbers: 66216.
biodb.TRACE[2025-06-28 16:01:49.587][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:49.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:49.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:49.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:49.591][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:49.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:49.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:49.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:49.594][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:49.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:49.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:49.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:01:49.598][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:01:49.599][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:01:49.599][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:01:49.604][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:01:49.604][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:01:49.605][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:01:49.606][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-28 16:01:49.607][private$loadEntries] Creating entries from ids [1]: "70860".
biodb.DEBUG[2025-06-28 16:01:49.608][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-06-28 16:01:49.609][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-06-28 16:01:49.613][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/70860.xml.
biodb.DEBUG[2025-06-28 16:01:49.614][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-06-28 16:01:49.615][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-06-28 16:01:49.616][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-06-28 16:01:49.618][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:01:49.618][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:01:49.619][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:01:49.623][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:01:49.624][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:01:49.625][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:01:49.626][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:01:49.628][ef$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:01:49.629][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:01:49.630][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:49.631][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:49.632][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:01:49.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:01:49.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:49.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:49.635][ef$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:01:49.636][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:01:49.637][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:49.638][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:49.639][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:01:49.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:01:49.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:49.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:49.643][ef$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:01:49.644][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:01:49.645][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:49.646][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:49.647][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:01:49.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:01:49.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:49.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:49.650][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:01:49.651][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:01:49.652][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:49.653][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:49.654][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:01:49.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:01:49.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:49.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:49.658][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:01:49.659][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:01:49.660][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:49.661][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:49.662][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:01:49.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:01:49.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:49.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:49.665][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:01:49.666][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:01:49.667][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:49.668][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:49.669][ef$get] Asked field names are: mass.
biodb.TRACE[2025-06-28 16:01:49.670][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:49.671][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:49.672][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:49.673][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-06-28 16:01:49.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:49.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:49.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:49.677][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:49.678][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:49.679][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:49.679][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:49.681][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:49.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:49.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:49.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:49.684][ef$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:01:49.685][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:01:49.686][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:49.687][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:49.688][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:01:49.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:01:49.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:49.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:49.692][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-06-28 16:01:49.693][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:01:49.694][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:49.695][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:49.696][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-06-28 16:01:49.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:01:49.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:49.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:49.699][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:01:49.700][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:01:49.701][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:49.702][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:49.703][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:01:49.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:01:49.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:49.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:49.707][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:01:49.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:01:49.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:49.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:49.711][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:01:49.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:01:49.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:49.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:49.714][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:01:49.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:01:49.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:49.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:49.722][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:01:49.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:01:49.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:49.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:49.726][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:01:49.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:01:49.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:49.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:49.729][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:01:49.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:01:49.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:49.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:49.733][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:01:49.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:01:49.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:49.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:49.736][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:01:49.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:01:49.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:49.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:49.740][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:01:49.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:01:49.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:49.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:49.743][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:01:49.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:01:49.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:49.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:01:49.747][self$createEntryFromContent] Accession numbers: 70860.
biodb.TRACE[2025-06-28 16:01:49.748][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:49.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:49.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:49.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:49.752][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:49.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:49.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:49.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:49.755][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:49.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:49.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:49.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:01:49.759][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:01:49.760][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:01:49.760][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:01:49.765][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:01:49.765][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:01:49.766][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:01:49.767][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-28 16:01:49.768][private$loadEntries] Creating entries from ids [1]: "70861".
biodb.DEBUG[2025-06-28 16:01:49.769][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-06-28 16:01:49.770][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-06-28 16:01:49.774][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/70861.xml.
biodb.DEBUG[2025-06-28 16:01:49.775][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-06-28 16:01:49.776][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-06-28 16:01:49.777][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-06-28 16:01:49.779][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:01:49.780][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:01:49.780][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:01:49.784][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:01:49.785][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:01:49.786][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:01:49.787][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:01:49.789][ef$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:01:49.790][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:01:49.791][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:49.792][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:49.793][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:01:49.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:01:49.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:49.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:49.796][ef$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:01:49.797][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:01:49.798][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:49.799][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:49.800][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:01:49.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:01:49.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:49.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:49.804][ef$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:01:49.805][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:01:49.806][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:49.807][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:49.808][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:01:49.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:01:49.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:49.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:49.812][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:01:49.812][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:01:49.813][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:49.814][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:49.815][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:01:49.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:01:49.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:49.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:49.819][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:01:49.820][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:01:49.821][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:49.822][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:49.823][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:01:49.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:01:49.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:49.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:49.827][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:01:49.828][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:01:49.828][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:49.829][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:49.830][ef$get] Asked field names are: mass.
biodb.TRACE[2025-06-28 16:01:49.831][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:49.832][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:49.833][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:49.834][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-06-28 16:01:49.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:49.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:49.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:49.838][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:49.839][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:49.840][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:49.841][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:49.842][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:49.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:49.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:49.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:49.846][ef$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:01:49.847][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:01:49.847][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:49.848][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:49.850][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:01:49.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:01:49.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:49.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:49.853][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-06-28 16:01:49.854][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:01:49.855][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:49.856][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:49.857][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-06-28 16:01:49.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:01:49.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:49.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:49.861][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:01:49.862][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:01:49.863][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:49.863][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:49.865][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:01:49.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:01:49.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:49.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:49.873][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:01:49.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:01:49.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:49.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:49.876][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:01:49.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:01:49.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:49.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:49.880][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:01:49.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:01:49.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:49.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:49.883][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:01:49.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:01:49.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:49.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:49.887][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:01:49.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:01:49.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:49.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:49.891][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:01:49.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:01:49.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:49.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:49.894][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:01:49.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:01:49.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:49.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:49.898][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:01:49.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:01:49.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:49.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:49.901][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:01:49.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:01:49.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:49.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:49.905][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:01:49.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:01:49.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:49.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:01:49.909][self$createEntryFromContent] Accession numbers: 70861.
biodb.TRACE[2025-06-28 16:01:49.910][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:49.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:49.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:49.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:49.913][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:49.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:49.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:49.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:49.917][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:49.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:49.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:49.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:01:49.921][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:01:49.922][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:01:49.922][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:01:49.927][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:01:49.927][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:01:49.928][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:01:49.929][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-28 16:01:49.930][private$loadEntries] Creating entries from ids [1]: "78662".
biodb.DEBUG[2025-06-28 16:01:49.931][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-06-28 16:01:49.932][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-06-28 16:01:49.936][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/78662.xml.
biodb.DEBUG[2025-06-28 16:01:49.937][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-06-28 16:01:49.938][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-06-28 16:01:49.939][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-06-28 16:01:49.941][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:01:49.942][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:01:49.942][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:01:49.947][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:01:49.948][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:01:49.948][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:01:49.949][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:01:49.951][ef$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:01:49.952][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:01:49.953][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:49.954][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:49.955][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:01:49.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:01:49.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:49.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:49.959][ef$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:01:49.960][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:01:49.961][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:49.962][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:49.963][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:01:49.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:01:49.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:49.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:49.967][ef$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:01:49.968][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:01:49.968][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:49.969][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:49.971][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:01:49.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:01:49.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:49.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:49.974][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:01:49.975][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:01:49.976][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:49.977][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:49.978][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:01:49.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:01:49.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:49.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:49.982][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:01:49.983][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:01:49.984][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:49.985][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:49.986][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:01:49.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:01:49.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:49.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:49.990][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:01:49.991][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:01:49.991][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:49.992][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:49.993][ef$get] Asked field names are: mass.
biodb.TRACE[2025-06-28 16:01:49.994][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:49.995][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:49.996][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:49.997][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-06-28 16:01:49.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:49.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:50.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:50.001][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:50.002][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:50.003][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:50.004][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:50.005][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:50.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:50.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:50.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:50.009][ef$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:01:50.010][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:01:50.010][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:50.011][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:50.013][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:01:50.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:01:50.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:50.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:50.021][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-06-28 16:01:50.022][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:01:50.023][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:50.023][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:50.025][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-06-28 16:01:50.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:01:50.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:50.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:50.028][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:01:50.029][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:01:50.030][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:50.031][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:50.032][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:01:50.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:01:50.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:50.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:50.036][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:01:50.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:01:50.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:50.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:50.039][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:01:50.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:01:50.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:50.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:50.043][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:01:50.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:01:50.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:50.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:50.046][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:01:50.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:01:50.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:50.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:50.050][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:01:50.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:01:50.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:50.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:50.054][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:01:50.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:01:50.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:50.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:50.057][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:01:50.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:01:50.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:50.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:50.061][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:01:50.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:01:50.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:50.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:50.065][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:01:50.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:01:50.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:50.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:50.068][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:01:50.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:01:50.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:50.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:01:50.072][self$createEntryFromContent] Accession numbers: 78662.
biodb.TRACE[2025-06-28 16:01:50.073][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:50.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:50.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:50.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:50.077][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:50.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:50.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:50.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:50.080][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:50.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:50.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:50.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:01:50.084][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:01:50.085][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:01:50.086][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:01:50.090][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:01:50.091][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:01:50.092][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:01:50.092][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-28 16:01:50.093][private$loadEntries] Creating entries from ids [1]: "85084".
biodb.DEBUG[2025-06-28 16:01:50.094][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-06-28 16:01:50.096][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-06-28 16:01:50.098][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/85084.xml.
biodb.DEBUG[2025-06-28 16:01:50.099][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-06-28 16:01:50.100][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-06-28 16:01:50.101][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-06-28 16:01:50.103][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:01:50.104][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:01:50.105][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:01:50.109][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:01:50.109][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:01:50.110][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:01:50.111][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:01:50.113][ef$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:01:50.114][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:01:50.115][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:50.116][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:50.117][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:01:50.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:01:50.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:50.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:50.121][ef$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:01:50.122][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:01:50.123][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:50.124][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:50.125][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:01:50.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:01:50.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:50.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:50.129][ef$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:01:50.130][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:01:50.131][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:50.131][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:50.133][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:01:50.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:01:50.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:50.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:50.136][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:01:50.137][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:01:50.138][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:50.139][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:50.140][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:01:50.141][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:01:50.142][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:50.143][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:50.144][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:01:50.145][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:01:50.146][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:50.147][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:50.148][ef$get] Asked field names are: mass.
biodb.TRACE[2025-06-28 16:01:50.149][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:50.150][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:50.151][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:50.152][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-06-28 16:01:50.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:50.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:50.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:50.155][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:50.156][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:50.157][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:50.158][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:50.159][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:50.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:50.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:50.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:50.163][ef$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:01:50.164][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:01:50.169][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:50.170][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:50.171][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:01:50.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:01:50.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:50.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:50.175][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-06-28 16:01:50.176][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:01:50.177][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:50.178][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:50.179][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-06-28 16:01:50.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:01:50.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:50.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:50.182][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:01:50.183][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:01:50.184][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:50.185][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:50.186][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:01:50.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:01:50.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:50.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:50.190][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:01:50.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:01:50.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:50.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:50.193][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:01:50.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:01:50.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:50.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:50.197][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:01:50.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:01:50.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:50.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:50.201][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:01:50.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:01:50.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:50.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:50.204][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:01:50.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:01:50.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:50.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:50.208][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:01:50.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:01:50.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:50.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:50.212][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:01:50.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:01:50.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:50.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:50.216][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:01:50.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:01:50.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:50.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:50.219][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:01:50.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:01:50.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:50.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:01:50.223][self$createEntryFromContent] Accession numbers: 85084.
biodb.TRACE[2025-06-28 16:01:50.224][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:50.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:50.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:50.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:50.228][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:50.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:50.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:50.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:50.231][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:50.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:50.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:50.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:01:50.235][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:01:50.236][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:01:50.237][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:01:50.241][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:01:50.242][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:01:50.243][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:01:50.243][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-28 16:01:50.244][private$loadEntries] Creating entries from ids [1]: "85086".
biodb.DEBUG[2025-06-28 16:01:50.245][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-06-28 16:01:50.247][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-06-28 16:01:50.249][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/85086.xml.
biodb.DEBUG[2025-06-28 16:01:50.250][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-06-28 16:01:50.251][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-06-28 16:01:50.252][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-06-28 16:01:50.254][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:01:50.255][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:01:50.255][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:01:50.260][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:01:50.260][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:01:50.261][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:01:50.262][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:01:50.264][ef$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:01:50.265][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:01:50.266][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:50.267][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:50.268][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:01:50.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:01:50.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:50.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:50.272][ef$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:01:50.273][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:01:50.274][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:50.275][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:50.276][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:01:50.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:01:50.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:50.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:50.280][ef$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:01:50.281][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:01:50.282][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:50.283][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:50.284][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:01:50.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:01:50.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:50.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:50.288][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:01:50.289][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:01:50.289][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:50.290][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:50.291][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:01:50.292][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:01:50.293][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:50.294][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:50.295][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:01:50.296][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:01:50.297][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:50.298][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:50.299][ef$get] Asked field names are: mass.
biodb.TRACE[2025-06-28 16:01:50.300][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:50.301][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:50.302][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:50.303][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-06-28 16:01:50.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:50.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:50.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:50.307][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:50.308][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:50.308][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:50.309][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:50.310][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:50.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:50.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:50.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:50.318][ef$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:01:50.320][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:01:50.320][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:50.321][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:50.323][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:01:50.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:01:50.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:50.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:50.326][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-06-28 16:01:50.327][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:01:50.328][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:50.329][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:50.330][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-06-28 16:01:50.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:01:50.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:50.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:50.334][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:01:50.335][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:01:50.335][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:50.336][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:50.337][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:01:50.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:01:50.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:50.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:50.341][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:01:50.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:01:50.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:50.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:50.345][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:01:50.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:01:50.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:50.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:50.348][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:01:50.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:01:50.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:50.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:50.352][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:01:50.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:01:50.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:50.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:50.356][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:01:50.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:01:50.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:50.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:50.359][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:01:50.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:01:50.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:50.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:50.363][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:01:50.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:01:50.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:50.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:50.367][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:01:50.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:01:50.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:50.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:50.370][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:01:50.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:01:50.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:50.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:01:50.374][self$createEntryFromContent] Accession numbers: 85086.
biodb.TRACE[2025-06-28 16:01:50.375][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:50.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:50.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:50.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:50.379][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:50.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:50.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:50.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:50.382][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:50.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:50.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:50.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:01:50.386][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:01:50.387][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:01:50.388][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:01:50.392][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:01:50.393][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:01:50.394][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:01:50.394][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-28 16:01:50.395][private$loadEntries] Creating entries from ids [1]: "88123".
biodb.DEBUG[2025-06-28 16:01:50.396][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-06-28 16:01:50.398][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-06-28 16:01:50.401][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/88123.xml.
biodb.DEBUG[2025-06-28 16:01:50.402][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-06-28 16:01:50.404][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-06-28 16:01:50.405][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-06-28 16:01:50.406][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:01:50.407][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:01:50.408][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:01:50.412][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:01:50.413][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:01:50.414][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:01:50.415][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:01:50.417][ef$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:01:50.418][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:01:50.419][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:50.419][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:50.421][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:01:50.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:01:50.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:50.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:50.424][ef$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:01:50.425][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:01:50.426][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:50.427][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:50.428][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:01:50.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:01:50.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:50.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:50.432][ef$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:01:50.433][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:01:50.434][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:50.435][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:50.436][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:01:50.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:01:50.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:50.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:50.440][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:01:50.441][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:01:50.442][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:50.443][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:50.444][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:01:50.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:01:50.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:50.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:50.448][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:01:50.449][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:01:50.450][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:50.451][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:50.452][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:01:50.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:01:50.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:50.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:50.455][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:01:50.456][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:01:50.457][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:50.458][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:50.459][ef$get] Asked field names are: mass.
biodb.TRACE[2025-06-28 16:01:50.460][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:50.461][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:50.462][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:50.463][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-06-28 16:01:50.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:50.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:50.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:50.472][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:50.473][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:50.473][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:50.474][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:50.475][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:50.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:50.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:50.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:50.479][ef$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:01:50.480][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:01:50.481][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:50.482][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:50.483][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:01:50.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:01:50.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:50.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:50.487][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-06-28 16:01:50.488][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:01:50.488][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:50.489][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:50.490][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-06-28 16:01:50.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:01:50.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:50.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:50.494][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:01:50.495][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:01:50.496][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:50.497][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:50.498][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:01:50.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:01:50.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:50.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:50.501][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:01:50.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:01:50.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:50.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:50.505][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:01:50.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:01:50.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:50.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:50.509][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:01:50.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:01:50.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:50.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:50.512][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:01:50.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:01:50.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:50.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:50.516][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:01:50.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:01:50.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:50.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:50.520][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:01:50.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:01:50.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:50.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:50.523][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:01:50.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:01:50.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:50.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:50.527][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:01:50.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:01:50.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:50.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:50.531][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:01:50.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:01:50.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:50.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:50.534][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:01:50.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:01:50.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:50.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:01:50.538][self$createEntryFromContent] Accession numbers: 88123.
biodb.TRACE[2025-06-28 16:01:50.539][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:50.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:50.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:50.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:50.543][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:50.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:50.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:50.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:50.546][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:50.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:50.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:50.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:01:50.550][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:01:50.551][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:01:50.551][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:01:50.556][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:01:50.557][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:01:50.557][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:01:50.558][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-28 16:01:50.559][private$loadEntries] Creating entries from ids [1]: "134117".
biodb.DEBUG[2025-06-28 16:01:50.560][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-06-28 16:01:50.562][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-06-28 16:01:50.566][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/134117.xml.
biodb.DEBUG[2025-06-28 16:01:50.566][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-06-28 16:01:50.568][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-06-28 16:01:50.569][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-06-28 16:01:50.570][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:01:50.571][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:01:50.572][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:01:50.576][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:01:50.577][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:01:50.578][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:01:50.579][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:01:50.581][ef$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:01:50.582][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:01:50.582][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:50.583][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:50.584][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:01:50.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:01:50.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:50.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:50.588][ef$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:01:50.589][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:01:50.590][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:50.591][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:50.592][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:01:50.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:01:50.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:50.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:50.596][ef$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:01:50.597][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:01:50.598][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:50.599][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:50.600][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:01:50.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:01:50.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:50.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:50.603][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:01:50.604][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:01:50.605][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:50.606][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:50.607][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:01:50.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:01:50.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:50.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:50.611][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:01:50.612][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:01:50.613][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:50.618][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:50.619][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:01:50.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:01:50.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:50.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:50.623][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:01:50.624][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:01:50.625][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:50.626][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:50.627][ef$get] Asked field names are: mass.
biodb.TRACE[2025-06-28 16:01:50.628][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:50.628][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:50.629][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:50.630][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-06-28 16:01:50.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:50.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:50.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:50.634][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:50.635][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:50.636][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:50.637][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:50.638][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:50.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:50.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:50.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:50.642][ef$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:01:50.643][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:01:50.643][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:50.644][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:50.645][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:01:50.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:01:50.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:50.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:50.649][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-06-28 16:01:50.650][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:01:50.651][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:50.652][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:50.653][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-06-28 16:01:50.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:01:50.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:50.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:50.657][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:01:50.658][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:01:50.658][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:50.659][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:50.660][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:01:50.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:01:50.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:50.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:50.664][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:01:50.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:01:50.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:50.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:50.668][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:01:50.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:01:50.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:50.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:50.671][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:01:50.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:01:50.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:50.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:50.675][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:01:50.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:01:50.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:50.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:50.679][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:01:50.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:01:50.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:50.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:50.682][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:01:50.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:01:50.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:50.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:50.686][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:01:50.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:01:50.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:50.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:50.690][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:01:50.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:01:50.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:50.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:50.693][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:01:50.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:01:50.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:50.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:50.697][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:01:50.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:01:50.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:50.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:01:50.701][self$createEntryFromContent] Accession numbers: 134117.
biodb.TRACE[2025-06-28 16:01:50.702][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:50.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:50.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:50.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:50.705][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:50.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:50.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:50.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:50.709][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:50.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:50.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:50.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:01:50.712][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:01:50.713][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:01:50.714][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:01:50.718][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:01:50.719][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:01:50.720][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:01:50.721][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-28 16:01:50.722][private$loadEntries] Creating entries from ids [1]: "138307".
biodb.DEBUG[2025-06-28 16:01:50.723][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-06-28 16:01:50.724][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-06-28 16:01:50.728][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/138307.xml.
biodb.DEBUG[2025-06-28 16:01:50.729][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-06-28 16:01:50.730][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-06-28 16:01:50.731][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-06-28 16:01:50.733][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:01:50.733][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:01:50.734][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:01:50.738][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:01:50.739][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:01:50.740][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:01:50.741][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:01:50.743][ef$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:01:50.744][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:01:50.745][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:50.746][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:50.747][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:01:50.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:01:50.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:50.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:50.750][ef$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:01:50.751][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:01:50.752][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:50.753][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:50.754][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:01:50.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:01:50.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:50.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:50.758][ef$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:01:50.759][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:01:50.760][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:50.761][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:50.766][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:01:50.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:01:50.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:50.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:50.770][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:01:50.771][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:01:50.772][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:50.773][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:50.774][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:01:50.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:01:50.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:50.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:50.777][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:01:50.778][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:01:50.779][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:50.780][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:50.781][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:01:50.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:01:50.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:50.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:50.785][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:01:50.786][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:01:50.787][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:50.787][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:50.788][ef$get] Asked field names are: mass.
biodb.TRACE[2025-06-28 16:01:50.789][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:50.790][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:50.791][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:50.792][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-06-28 16:01:50.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:50.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:50.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:50.796][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:50.797][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:50.798][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:50.799][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:50.800][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:50.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:50.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:50.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:50.803][ef$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:01:50.804][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:01:50.805][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:50.806][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:50.807][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:01:50.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:01:50.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:50.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:50.811][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-06-28 16:01:50.812][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:01:50.813][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:50.814][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:50.815][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-06-28 16:01:50.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:01:50.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:50.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:50.818][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:01:50.819][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:01:50.820][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:50.821][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:50.822][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:01:50.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:01:50.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:50.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:50.826][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:01:50.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:01:50.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:50.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:50.830][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:01:50.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:01:50.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:50.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:50.833][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:01:50.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:01:50.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:50.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:50.837][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:01:50.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:01:50.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:50.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:50.841][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:01:50.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:01:50.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:50.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:50.844][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:01:50.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:01:50.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:50.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:50.848][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:01:50.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:01:50.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:50.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:50.852][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:01:50.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:01:50.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:50.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:50.855][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:01:50.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:01:50.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:50.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:50.859][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:01:50.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:01:50.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:50.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:01:50.863][self$createEntryFromContent] Accession numbers: 138307.
biodb.TRACE[2025-06-28 16:01:50.864][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:50.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:50.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:50.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:50.867][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:50.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:50.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:50.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:50.871][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:50.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:50.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:50.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:01:50.874][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:01:50.875][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:01:50.876][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:01:50.880][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:01:50.881][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:01:50.882][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:01:50.883][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-28 16:01:50.884][private$loadEntries] Creating entries from ids [1]: "176803".
biodb.DEBUG[2025-06-28 16:01:50.885][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-06-28 16:01:50.886][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-06-28 16:01:50.890][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/176803.xml.
biodb.DEBUG[2025-06-28 16:01:50.891][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-06-28 16:01:50.892][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-06-28 16:01:50.893][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-06-28 16:01:50.895][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:01:50.896][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:01:50.896][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:01:50.901][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:01:50.901][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:01:50.902][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:01:50.903][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:01:50.905][ef$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:01:50.906][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:01:50.907][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:50.908][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:50.909][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:01:50.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:01:50.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:50.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:50.917][ef$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:01:50.918][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:01:50.919][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:50.919][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:50.921][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:01:50.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:01:50.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:50.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:50.924][ef$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:01:50.925][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:01:50.926][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:50.927][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:50.928][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:01:50.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:01:50.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:50.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:50.932][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:01:50.932][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:01:50.933][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:50.934][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:50.935][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:01:50.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:01:50.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:50.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:50.939][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:01:50.940][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:01:50.941][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:50.941][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:50.943][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:01:50.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:01:50.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:50.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:50.946][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:01:50.947][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:01:50.948][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:50.949][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:50.950][ef$get] Asked field names are: mass.
biodb.TRACE[2025-06-28 16:01:50.951][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:50.952][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:50.953][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:50.954][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-06-28 16:01:50.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:50.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:50.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:50.958][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:50.959][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:50.959][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:50.960][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:50.961][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:50.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:50.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:50.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:50.965][ef$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:01:50.966][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:01:50.967][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:50.968][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:50.969][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:01:50.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:01:50.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:50.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:50.973][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-06-28 16:01:50.974][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:01:50.975][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:50.975][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:50.977][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-06-28 16:01:50.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:01:50.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:50.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:50.980][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:01:50.981][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:01:50.982][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:50.983][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:50.984][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:01:50.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:01:50.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:50.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:50.988][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:01:50.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:01:50.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:50.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:50.991][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:01:50.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:01:50.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:50.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:50.995][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:01:50.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:01:50.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:50.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:50.999][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:01:51.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:01:51.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:51.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:51.002][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:01:51.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:01:51.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:51.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:51.006][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:01:51.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:01:51.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:51.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:51.010][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:01:51.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:01:51.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:51.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:51.013][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:01:51.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:01:51.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:51.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:51.017][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:01:51.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:01:51.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:51.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:51.021][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:01:51.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:01:51.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:51.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:01:51.024][self$createEntryFromContent] Accession numbers: 176803.
biodb.TRACE[2025-06-28 16:01:51.025][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:51.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:51.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:51.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:51.029][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:51.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:51.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:51.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:51.033][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:51.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:51.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:51.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:01:51.036][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:01:51.037][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:01:51.038][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:01:51.042][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:01:51.043][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:01:51.044][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:01:51.045][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-28 16:01:51.046][private$loadEntries] Creating entries from ids [1]: "176962".
biodb.DEBUG[2025-06-28 16:01:51.047][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-06-28 16:01:51.048][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-06-28 16:01:51.052][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/176962.xml.
biodb.DEBUG[2025-06-28 16:01:51.053][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-06-28 16:01:51.054][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-06-28 16:01:51.055][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-06-28 16:01:51.056][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:01:51.061][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:01:51.062][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:01:51.066][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:01:51.067][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:01:51.068][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:01:51.069][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:01:51.071][ef$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:01:51.072][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:01:51.073][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:51.074][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:51.075][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:01:51.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:01:51.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:51.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:51.078][ef$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:01:51.079][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:01:51.080][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:51.081][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:51.082][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:01:51.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:01:51.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:51.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:51.086][ef$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:01:51.087][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:01:51.088][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:51.088][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:51.089][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:01:51.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:01:51.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:51.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:51.093][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:01:51.094][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:01:51.095][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:51.096][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:51.097][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:01:51.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:01:51.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:51.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:51.101][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:01:51.102][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:01:51.102][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:51.103][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:51.104][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:01:51.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:01:51.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:51.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:51.108][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:01:51.109][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:01:51.110][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:51.111][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:51.112][ef$get] Asked field names are: mass.
biodb.TRACE[2025-06-28 16:01:51.113][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:51.114][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:51.115][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:51.116][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-06-28 16:01:51.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:51.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:51.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:51.120][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:51.120][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:51.121][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:51.122][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:51.123][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:51.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:51.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:51.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:51.127][ef$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:01:51.128][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:01:51.129][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:51.130][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:51.131][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:01:51.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:01:51.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:51.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:51.135][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-06-28 16:01:51.136][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:01:51.136][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:51.137][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:51.138][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-06-28 16:01:51.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:01:51.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:51.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:51.142][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:01:51.143][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:01:51.144][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:51.145][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:51.146][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:01:51.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:01:51.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:51.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:51.150][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:01:51.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:01:51.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:51.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:51.153][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:01:51.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:01:51.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:51.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:51.157][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:01:51.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:01:51.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:51.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:51.161][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:01:51.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:01:51.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:51.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:51.164][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:01:51.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:01:51.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:51.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:51.168][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:01:51.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:01:51.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:51.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:51.172][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:01:51.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:01:51.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:51.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:51.175][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:01:51.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:01:51.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:51.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:51.179][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:01:51.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:01:51.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:51.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:51.183][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:01:51.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:01:51.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:51.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:01:51.186][self$createEntryFromContent] Accession numbers: 176962.
biodb.TRACE[2025-06-28 16:01:51.187][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:51.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:51.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:51.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:51.191][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:51.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:51.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:51.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:51.195][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:51.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:51.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:51.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:01:51.198][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:01:51.199][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:01:51.200][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:01:51.208][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:01:51.209][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:01:51.210][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:01:51.211][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-28 16:01:51.212][private$loadEntries] Creating entries from ids [1]: "198655".
biodb.DEBUG[2025-06-28 16:01:51.213][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-06-28 16:01:51.214][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-06-28 16:01:51.217][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/198655.xml.
biodb.DEBUG[2025-06-28 16:01:51.218][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-06-28 16:01:51.219][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-06-28 16:01:51.220][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-06-28 16:01:51.222][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:01:51.222][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:01:51.223][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:01:51.227][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:01:51.228][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:01:51.229][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:01:51.230][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:01:51.232][ef$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:01:51.233][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:01:51.233][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:51.234][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:51.235][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:01:51.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:01:51.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:51.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:51.239][ef$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:01:51.240][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:01:51.241][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:51.242][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:51.243][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:01:51.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:01:51.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:51.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:51.247][ef$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:01:51.248][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:01:51.249][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:51.249][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:51.251][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:01:51.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:01:51.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:51.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:51.255][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:01:51.255][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:01:51.256][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:51.257][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:51.258][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:01:51.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:01:51.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:51.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:51.262][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:01:51.263][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:01:51.264][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:51.265][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:51.266][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:01:51.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:01:51.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:51.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:51.270][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:01:51.271][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:01:51.271][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:51.272][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:51.273][ef$get] Asked field names are: mass.
biodb.TRACE[2025-06-28 16:01:51.274][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:51.275][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:51.276][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:51.277][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-06-28 16:01:51.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:51.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:51.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:51.281][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:51.282][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:51.283][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:51.284][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:51.285][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:51.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:51.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:51.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:51.288][ef$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:01:51.289][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:01:51.290][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:51.291][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:51.292][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:01:51.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:01:51.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:51.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:51.296][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-06-28 16:01:51.297][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:01:51.298][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:51.299][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:51.300][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-06-28 16:01:51.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:01:51.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:51.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:51.304][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:01:51.305][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:01:51.306][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:51.306][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:51.308][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:01:51.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:01:51.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:51.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:51.311][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:01:51.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:01:51.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:51.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:51.315][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:01:51.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:01:51.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:51.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:51.319][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:01:51.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:01:51.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:51.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:51.322][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:01:51.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:01:51.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:51.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:51.333][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:01:51.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:01:51.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:51.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:51.337][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:01:51.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:01:51.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:51.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:51.341][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:01:51.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:01:51.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:51.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:51.346][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:01:51.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:01:51.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:51.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:51.350][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:01:51.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:01:51.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:51.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:51.354][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:01:51.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:01:51.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:51.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:01:51.358][self$createEntryFromContent] Accession numbers: 198655.
biodb.TRACE[2025-06-28 16:01:51.376][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:51.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:51.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:51.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:51.381][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:51.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:51.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:51.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:51.385][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:51.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:51.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:51.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:01:51.389][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:01:51.390][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:01:51.391][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:01:51.395][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:01:51.396][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:01:51.397][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:01:51.398][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-28 16:01:51.399][private$loadEntries] Creating entries from ids [1]: "215045".
biodb.DEBUG[2025-06-28 16:01:51.400][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-06-28 16:01:51.402][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-06-28 16:01:51.405][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/215045.xml.
biodb.DEBUG[2025-06-28 16:01:51.407][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-06-28 16:01:51.408][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-06-28 16:01:51.409][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-06-28 16:01:51.411][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:01:51.412][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:01:51.412][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:01:51.417][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:01:51.418][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:01:51.419][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:01:51.420][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:01:51.422][ef$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:01:51.423][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:01:51.424][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:51.425][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:51.426][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:01:51.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:01:51.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:51.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:51.431][ef$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:01:51.432][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:01:51.433][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:51.434][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:51.435][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:01:51.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:01:51.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:51.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:51.439][ef$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:01:51.440][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:01:51.441][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:51.442][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:51.443][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:01:51.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:01:51.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:51.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:51.447][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:01:51.448][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:01:51.449][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:51.450][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:51.451][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:01:51.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:01:51.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:51.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:51.456][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:01:51.457][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:01:51.458][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:51.458][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:51.460][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:01:51.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:01:51.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:51.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:51.465][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:01:51.467][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:01:51.468][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:51.470][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:51.471][ef$get] Asked field names are: mass.
biodb.TRACE[2025-06-28 16:01:51.473][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:51.473][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:51.475][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:51.476][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-06-28 16:01:51.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:51.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:51.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:51.483][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:51.484][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:51.486][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:51.487][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:51.489][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:51.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:51.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:51.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:51.495][ef$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:01:51.497][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:01:51.498][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:51.500][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:51.502][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:01:51.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:01:51.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:51.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:51.508][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-06-28 16:01:51.510][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:01:51.511][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:51.513][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:51.514][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-06-28 16:01:51.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:01:51.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:51.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:51.521][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:01:51.522][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:01:51.524][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:51.525][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:51.527][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:01:51.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:01:51.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:51.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:51.533][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:01:51.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:01:51.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:51.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:51.539][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:01:51.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:01:51.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:51.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:51.545][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:01:51.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:01:51.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:51.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:51.550][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:01:51.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:01:51.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:51.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:51.556][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:01:51.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:01:51.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:51.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:51.562][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:01:51.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:01:51.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:51.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:51.568][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:01:51.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:01:51.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:51.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:51.577][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:01:51.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:01:51.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:51.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:51.580][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:01:51.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:01:51.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:51.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:51.584][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:01:51.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:01:51.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:51.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:01:51.587][self$createEntryFromContent] Accession numbers: 215045.
biodb.TRACE[2025-06-28 16:01:51.588][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:51.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:51.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:51.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:51.592][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:51.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:51.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:51.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:51.595][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:51.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:51.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:51.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
sched.DEBUG[2025-06-28 16:01:51.614][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-06-28 16:01:51.616][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-06-28 16:01:51.620][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/80cdc67a2a6332dd4ceb98b7656194b9.content.
sched.DEBUG[2025-06-28 16:01:51.621][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-06-28 16:01:51.623][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:01:51.624][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:01:51.625][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:01:51.629][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:01:51.629][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:01:51.630][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:01:51.631][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:01:51.632][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:51.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:51.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:51.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:51.636][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:51.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:51.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:51.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:51.639][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:51.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:51.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:51.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:01:51.643][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:01:51.644][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:01:51.645][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:01:51.649][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:01:51.649][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:01:51.650][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:01:51.651][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:01:51.652][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:51.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:51.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:51.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:51.656][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:51.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:51.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:51.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:51.659][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:51.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:51.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:51.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:51.663][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:51.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:51.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:51.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:51.667][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:51.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:51.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:51.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:01:51.671][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:01:51.671][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:01:51.672][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:01:51.676][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:01:51.677][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:01:51.678][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:01:51.679][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:01:51.680][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:51.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:51.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:51.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:51.683][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:51.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:51.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:51.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:51.687][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:51.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:51.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:51.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:51.691][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:51.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:51.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:51.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:51.695][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:51.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:51.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:51.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:01:51.698][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:01:51.699][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:01:51.700][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:01:51.704][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:01:51.705][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:01:51.705][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:01:51.706][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:01:51.707][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:51.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:51.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:51.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:51.711][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:51.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:51.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:51.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:51.719][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:51.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:51.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:51.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:51.723][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:51.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:51.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:51.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:51.726][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:51.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:51.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:51.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:01:51.730][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:01:51.731][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:01:51.731][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:01:51.736][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:01:51.736][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:01:51.737][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:01:51.738][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:01:51.739][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:51.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:51.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:51.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:51.743][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:51.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:51.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:51.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:51.747][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:51.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:51.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:51.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:01:51.750][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:01:51.751][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:01:51.752][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:01:51.756][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:01:51.757][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:01:51.757][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:01:51.758][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:01:51.759][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:51.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:51.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:51.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:51.763][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:51.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:51.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:51.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:51.767][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:51.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:51.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:51.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:01:51.770][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:01:51.771][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:01:51.772][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:01:51.776][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:01:51.777][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:01:51.777][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:01:51.778][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:01:51.779][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:51.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:51.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:51.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:51.783][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:51.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:51.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:51.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:51.787][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:51.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:51.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:51.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:01:51.790][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:01:51.791][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:01:51.792][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:01:51.796][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:01:51.797][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:01:51.797][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:01:51.798][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:01:51.799][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:51.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:51.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:51.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:51.803][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:51.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:51.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:51.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:51.807][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:51.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:51.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:51.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:01:51.810][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:01:51.811][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:01:51.812][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:01:51.816][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:01:51.817][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:01:51.817][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:01:51.818][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:01:51.819][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:51.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:51.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:51.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:51.823][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:51.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:51.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:51.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:51.827][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:51.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:51.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:51.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:01:51.830][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:01:51.831][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:01:51.832][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:01:51.836][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:01:51.837][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:01:51.838][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:01:51.838][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:01:51.839][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:51.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:51.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:51.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:51.843][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:51.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:51.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:51.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:51.847][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:51.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:51.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:51.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:01:51.850][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:01:51.851][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:01:51.852][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:01:51.856][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:01:51.857][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:01:51.857][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:01:51.862][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:01:51.863][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:51.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:51.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:51.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:51.867][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:51.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:51.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:51.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:51.871][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:51.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:51.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:51.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:01:51.874][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:01:51.875][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:01:51.876][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:01:51.880][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:01:51.881][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:01:51.881][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:01:51.882][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:01:51.883][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:51.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:51.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:51.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:51.887][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:51.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:51.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:51.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:51.890][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:51.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:51.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:51.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:01:51.894][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:01:51.895][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:01:51.895][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:01:51.899][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:01:51.900][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:01:51.901][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:01:51.902][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:01:51.903][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:51.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:51.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:51.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:51.907][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:51.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:51.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:51.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:51.910][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:51.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:51.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:51.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:01:51.914][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:01:51.915][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:01:51.915][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:01:51.919][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:01:51.920][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:01:51.921][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:01:51.922][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:01:51.923][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:51.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:51.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:51.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:51.926][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:51.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:51.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:51.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:51.930][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:51.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:51.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:51.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:01:51.934][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:01:51.935][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:01:51.935][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:01:51.939][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:01:51.940][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:01:51.941][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:01:51.942][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:01:51.943][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:51.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:51.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:51.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:51.946][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:51.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:51.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:51.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:51.950][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:51.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:51.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:51.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:01:51.954][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:01:51.954][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:01:51.955][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:01:51.959][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:01:51.960][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:01:51.961][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:01:51.962][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:01:51.963][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:51.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:51.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:51.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:51.966][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:51.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:51.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:51.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:51.970][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:51.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:51.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:51.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:01:51.974][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:01:51.974][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:01:51.975][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:01:51.979][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:01:51.980][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:01:51.981][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:01:51.982][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:01:51.983][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:51.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:51.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:51.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:51.986][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:51.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:51.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:51.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:51.990][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:51.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:51.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:51.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:01:51.994][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:01:51.994][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:01:51.995][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:01:51.999][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:01:52.000][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:01:52.008][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:01:52.009][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:01:52.010][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:52.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:52.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:52.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:52.014][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:52.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:52.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:52.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:52.017][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:52.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:52.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:52.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:01:52.021][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:01:52.022][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:01:52.022][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:01:52.026][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:01:52.027][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:01:52.028][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:01:52.029][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:01:52.030][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:52.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:52.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:52.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:52.033][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:52.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:52.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:52.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:52.037][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:52.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:52.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:52.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:01:52.040][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:01:52.041][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:01:52.042][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:01:52.046][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:01:52.047][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:01:52.048][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:01:52.049][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:01:52.050][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:52.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:52.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:52.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:52.053][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:52.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:52.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:52.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:52.057][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:52.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:52.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:52.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:52.072][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:52.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:52.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:52.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:52.076][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:52.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:52.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:52.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:52.079][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:52.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:52.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:52.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:52.083][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:52.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:52.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:52.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:52.087][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:52.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:52.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:52.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
sched.DEBUG[2025-06-28 16:01:52.114][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39124*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-06-28 16:01:52.116][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-06-28 16:01:52.118][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/63dc67d905e130c19900bd338bad7ba9.content.
sched.DEBUG[2025-06-28 16:01:52.119][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
sched.DEBUG[2025-06-28 16:01:52.122][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39125*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-06-28 16:01:52.124][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-06-28 16:01:52.126][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/287cac4c6e727656d926f26e3952924c.content.
sched.DEBUG[2025-06-28 16:01:52.127][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-06-28 16:01:52.130][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:01:52.130][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:01:52.131][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:01:52.135][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:01:52.136][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:01:52.137][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:01:52.138][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-28 16:01:52.139][private$loadEntries] Creating entries from ids [1]: "4648".
biodb.DEBUG[2025-06-28 16:01:52.140][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-06-28 16:01:52.141][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-06-28 16:01:52.145][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/4648.xml.
biodb.DEBUG[2025-06-28 16:01:52.146][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-06-28 16:01:52.147][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-06-28 16:01:52.153][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-06-28 16:01:52.155][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:01:52.156][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:01:52.156][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:01:52.161][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:01:52.161][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:01:52.162][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:01:52.163][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:01:52.165][ef$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:01:52.166][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:01:52.167][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:52.168][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:52.169][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:01:52.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:01:52.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:52.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:52.173][ef$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:01:52.173][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:01:52.174][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:52.175][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:52.176][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:01:52.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:01:52.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:52.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:52.180][ef$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:01:52.181][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:01:52.182][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:52.183][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:52.184][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:01:52.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:01:52.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:52.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:52.188][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:01:52.189][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:01:52.189][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:52.190][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:52.191][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:01:52.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:01:52.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:52.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:52.195][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:01:52.196][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:01:52.197][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:52.198][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:52.199][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:01:52.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:01:52.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:52.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:52.203][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:01:52.204][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:01:52.205][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:52.205][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:52.207][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:01:52.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:01:52.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:52.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:52.210][ef$get] Asked field names are: mass.
biodb.TRACE[2025-06-28 16:01:52.211][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:52.212][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:52.213][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:52.214][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-06-28 16:01:52.215][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:52.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:52.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:52.218][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:52.219][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:52.220][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:52.221][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:52.222][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:52.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:52.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:52.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:52.225][ef$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:01:52.226][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:01:52.227][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:52.228][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:52.229][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:01:52.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:01:52.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:52.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:52.233][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-06-28 16:01:52.234][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:01:52.235][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:52.236][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:52.237][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-06-28 16:01:52.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:01:52.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:52.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:52.241][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:01:52.242][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:01:52.242][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:52.243][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:52.244][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:01:52.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:01:52.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:52.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:52.248][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:01:52.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:01:52.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:52.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:52.252][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:01:52.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:01:52.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:52.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:52.255][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:01:52.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:01:52.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:52.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:52.259][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:01:52.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:01:52.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:52.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:52.263][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:01:52.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:01:52.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:52.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:52.267][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:01:52.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:01:52.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:52.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:52.270][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:01:52.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:01:52.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:52.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:52.274][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:01:52.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:01:52.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:52.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:52.278][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:01:52.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:01:52.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:52.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:52.281][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:01:52.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:01:52.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:52.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:01:52.285][self$createEntryFromContent] Accession numbers: 4648.
biodb.TRACE[2025-06-28 16:01:52.286][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:52.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:52.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:52.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:52.289][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:52.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:52.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:52.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:52.293][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:52.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:52.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:52.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:01:52.301][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:01:52.302][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:01:52.303][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:01:52.307][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:01:52.308][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:01:52.309][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:01:52.310][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:01:52.311][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:52.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:52.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:52.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:52.314][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:52.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:52.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:52.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:52.318][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:52.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:52.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:52.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:01:52.322][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:01:52.322][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:01:52.323][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:01:52.327][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:01:52.328][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:01:52.329][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:01:52.329][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-28 16:01:52.330][private$loadEntries] Creating entries from ids [1]: "62447".
biodb.DEBUG[2025-06-28 16:01:52.331][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-06-28 16:01:52.333][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
fscache.DEBUG[2025-06-28 16:01:52.336][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/62447.xml.
biodb.DEBUG[2025-06-28 16:01:52.337][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-06-28 16:01:52.338][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-06-28 16:01:52.339][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-06-28 16:01:52.341][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:01:52.342][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:01:52.343][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:01:52.347][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:01:52.347][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:01:52.348][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:01:52.349][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:01:52.351][ef$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:01:52.352][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:01:52.353][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:52.354][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:52.355][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:01:52.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:01:52.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:52.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:52.359][ef$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:01:52.360][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:01:52.360][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:52.361][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:52.362][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:01:52.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:01:52.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:52.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:52.366][ef$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:01:52.367][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:01:52.368][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:52.369][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:52.370][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:01:52.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:01:52.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:52.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:52.374][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:01:52.375][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:01:52.376][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:52.376][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:52.378][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:01:52.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:01:52.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:52.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:52.381][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:01:52.382][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:01:52.383][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:52.384][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:52.385][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:01:52.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:01:52.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:52.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:52.389][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:01:52.390][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:01:52.391][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:52.391][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:52.393][ef$get] Asked field names are: mass.
biodb.TRACE[2025-06-28 16:01:52.394][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:52.394][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:52.395][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:52.396][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-06-28 16:01:52.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:52.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:52.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:52.400][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:52.401][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:52.402][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:52.403][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:52.404][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:52.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:52.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:52.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:52.408][ef$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:01:52.409][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:01:52.410][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:52.410][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:52.412][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:01:52.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:01:52.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:52.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:52.415][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-06-28 16:01:52.416][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:01:52.417][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:52.418][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:52.419][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-06-28 16:01:52.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:01:52.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:52.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:52.423][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:01:52.424][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:01:52.425][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:52.426][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:52.427][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:01:52.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:01:52.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:52.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:52.431][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:01:52.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:01:52.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:52.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:52.434][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:01:52.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:01:52.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:52.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:52.438][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:01:52.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:01:52.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:52.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:52.441][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:01:52.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:01:52.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:52.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:52.450][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:01:52.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:01:52.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:52.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:52.454][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:01:52.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:01:52.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:52.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:52.457][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:01:52.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:01:52.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:52.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:52.461][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:01:52.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:01:52.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:52.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:52.465][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:01:52.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:01:52.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:52.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:52.468][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:01:52.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:01:52.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:52.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:01:52.472][self$createEntryFromContent] Accession numbers: 62447.
biodb.TRACE[2025-06-28 16:01:52.473][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:52.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:52.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:52.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:52.476][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:52.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:52.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:52.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:52.480][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:52.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:52.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:52.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
sched.DEBUG[2025-06-28 16:01:52.499][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-06-28 16:01:52.502][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-06-28 16:01:52.506][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/80cdc67a2a6332dd4ceb98b7656194b9.content.
sched.DEBUG[2025-06-28 16:01:52.507][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-06-28 16:01:52.510][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:01:52.510][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:01:52.511][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:01:52.515][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:01:52.516][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:01:52.517][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:01:52.518][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:01:52.519][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:52.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:52.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:52.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:52.522][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:52.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:52.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:52.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:52.526][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:52.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:52.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:52.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:01:52.530][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:01:52.531][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:01:52.531][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:01:52.535][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:01:52.536][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:01:52.537][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:01:52.538][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:01:52.539][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:52.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:52.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:52.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:52.543][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:52.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:52.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:52.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:52.546][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:52.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:52.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:52.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:52.550][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:52.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:52.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:52.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:52.554][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:52.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:52.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:52.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:01:52.558][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:01:52.558][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:01:52.559][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:01:52.563][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:01:52.564][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:01:52.565][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:01:52.566][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:01:52.567][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:52.568][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:52.569][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:52.570][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:52.571][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:52.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:52.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:52.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:52.574][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:52.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:52.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:52.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:52.578][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:52.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:52.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:52.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:52.582][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:52.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:52.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:52.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:01:52.585][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:01:52.586][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:01:52.587][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:01:52.591][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:01:52.592][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:01:52.593][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:01:52.598][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:01:52.599][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:52.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:52.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:52.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:52.603][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:52.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:52.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:52.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:52.607][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:52.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:52.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:52.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:52.610][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:52.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:52.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:52.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:52.614][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:52.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:52.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:52.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:01:52.617][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:01:52.618][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:01:52.619][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:01:52.623][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:01:52.624][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:01:52.625][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:01:52.625][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:01:52.626][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:52.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:52.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:52.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:52.630][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:52.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:52.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:52.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:52.634][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:52.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:52.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:52.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:01:52.637][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:01:52.638][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:01:52.639][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:01:52.643][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:01:52.644][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:01:52.645][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:01:52.646][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:01:52.647][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:52.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:52.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:52.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:52.650][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:52.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:52.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:52.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:52.654][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:52.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:52.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:52.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:01:52.658][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:01:52.658][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:01:52.659][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:01:52.663][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:01:52.664][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:01:52.665][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:01:52.666][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:01:52.667][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:52.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:52.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:52.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:52.670][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:52.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:52.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:52.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:52.674][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:52.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:52.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:52.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:01:52.678][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:01:52.678][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:01:52.679][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:01:52.683][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:01:52.684][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:01:52.685][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:01:52.686][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:01:52.687][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:52.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:52.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:52.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:52.690][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:52.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:52.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:52.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:52.694][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:52.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:52.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:52.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:01:52.698][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:01:52.698][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:01:52.699][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:01:52.703][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:01:52.704][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:01:52.705][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:01:52.706][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:01:52.707][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:52.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:52.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:52.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:52.710][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:52.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:52.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:52.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:52.714][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:52.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:52.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:52.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:01:52.718][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:01:52.718][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:01:52.719][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:01:52.723][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:01:52.724][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:01:52.725][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:01:52.726][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:01:52.727][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:52.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:52.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:52.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:52.730][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:52.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:52.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:52.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:52.734][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:52.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:52.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:52.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:01:52.741][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:01:52.742][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:01:52.743][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:01:52.747][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:01:52.748][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:01:52.749][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:01:52.750][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:01:52.751][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:52.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:52.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:52.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:52.754][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:52.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:52.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:52.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:52.758][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:52.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:52.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:52.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:01:52.761][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:01:52.762][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:01:52.763][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:01:52.767][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:01:52.768][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:01:52.768][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:01:52.769][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:01:52.770][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:52.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:52.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:52.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:52.774][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:52.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:52.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:52.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:52.777][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:52.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:52.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:52.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:01:52.781][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:01:52.782][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:01:52.783][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:01:52.787][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:01:52.787][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:01:52.788][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:01:52.789][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:01:52.790][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:52.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:52.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:52.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:52.794][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:52.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:52.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:52.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:52.797][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:52.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:52.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:52.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:01:52.801][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:01:52.802][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:01:52.803][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:01:52.806][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:01:52.807][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:01:52.808][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:01:52.809][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:01:52.810][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:52.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:52.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:52.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:52.814][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:52.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:52.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:52.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:52.817][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:52.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:52.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:52.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:01:52.821][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:01:52.822][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:01:52.822][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:01:52.826][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:01:52.827][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:01:52.828][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:01:52.829][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:01:52.830][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:52.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:52.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:52.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:52.833][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:52.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:52.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:52.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:52.837][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:52.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:52.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:52.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:01:52.841][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:01:52.841][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:01:52.842][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:01:52.846][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:01:52.847][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:01:52.848][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:01:52.848][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:01:52.849][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:52.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:52.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:52.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:52.853][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:52.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:52.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:52.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:52.857][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:52.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:52.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:52.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:01:52.861][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:01:52.861][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:01:52.862][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:01:52.866][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:01:52.867][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:01:52.868][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:01:52.868][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:01:52.869][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:52.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:52.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:52.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:52.873][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:52.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:52.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:52.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:52.877][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:52.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:52.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:52.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:01:52.884][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:01:52.885][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:01:52.886][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:01:52.890][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:01:52.891][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:01:52.892][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:01:52.892][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:01:52.893][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:52.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:52.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:52.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:52.897][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:52.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:52.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:52.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:52.901][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:52.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:52.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:52.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:01:52.904][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:01:52.905][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:01:52.906][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:01:52.909][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:01:52.910][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:01:52.911][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:01:52.912][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:01:52.913][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:52.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:52.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:52.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:52.917][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:52.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:52.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:52.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:52.920][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:52.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:52.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:52.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:01:52.924][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:01:52.925][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:01:52.925][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:01:52.929][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:01:52.930][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:01:52.931][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:01:52.932][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:01:52.933][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:52.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:52.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:52.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:52.936][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:52.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:52.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:52.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:52.940][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:52.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:52.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:52.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
sched.DEBUG[2025-06-28 16:01:52.958][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-06-28 16:01:52.960][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-06-28 16:01:52.963][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/80cdc67a2a6332dd4ceb98b7656194b9.content.
sched.DEBUG[2025-06-28 16:01:52.964][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-06-28 16:01:52.967][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:01:52.968][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:01:52.968][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:01:52.972][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:01:52.973][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:01:52.974][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:01:52.975][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:01:52.976][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:52.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:52.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:52.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:52.979][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:52.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:52.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:52.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:52.983][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:52.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:52.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:52.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:01:52.987][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:01:52.987][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:01:52.988][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:01:52.992][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:01:52.993][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:01:52.994][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:01:52.995][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:01:52.996][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:52.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:52.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:52.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:52.999][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:53.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:53.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:53.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:53.003][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:53.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:53.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:53.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:53.007][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:53.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:53.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:53.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:53.010][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:53.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:53.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:53.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:01:53.014][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:01:53.015][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:01:53.016][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:01:53.019][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:01:53.020][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:01:53.021][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:01:53.022][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:01:53.023][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:53.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:53.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:53.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:53.031][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:53.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:53.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:53.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:53.035][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:53.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:53.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:53.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:53.039][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:53.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:53.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:53.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:53.042][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:53.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:53.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:53.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:01:53.046][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:01:53.047][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:01:53.048][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:01:53.052][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:01:53.052][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:01:53.053][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:01:53.054][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:01:53.055][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:53.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:53.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:53.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:53.059][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:53.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:53.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:53.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:53.062][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:53.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:53.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:53.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:53.066][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:53.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:53.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:53.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:53.070][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:53.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:53.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:53.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:01:53.073][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:01:53.074][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:01:53.075][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:01:53.079][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:01:53.080][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:01:53.081][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:01:53.081][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:01:53.082][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:53.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:53.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:53.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:53.086][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:53.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:53.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:53.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:53.090][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:53.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:53.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:53.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:01:53.093][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:01:53.094][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:01:53.095][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:01:53.099][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:01:53.100][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:01:53.101][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:01:53.101][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:01:53.102][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:53.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:53.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:53.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:53.106][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:53.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:53.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:53.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:53.110][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:53.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:53.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:53.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:01:53.113][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:01:53.114][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:01:53.115][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:01:53.119][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:01:53.120][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:01:53.120][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:01:53.121][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:01:53.122][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:53.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:53.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:53.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:53.126][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:53.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:53.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:53.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:53.130][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:53.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:53.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:53.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:01:53.133][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:01:53.134][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:01:53.135][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:01:53.139][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:01:53.140][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:01:53.140][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:01:53.141][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:01:53.142][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:53.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:53.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:53.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:53.146][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:53.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:53.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:53.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:53.150][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:53.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:53.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:53.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:01:53.153][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:01:53.154][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:01:53.155][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:01:53.159][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:01:53.159][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:01:53.160][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:01:53.161][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:01:53.162][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:53.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:53.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:53.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:53.166][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:53.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:53.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:53.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:53.173][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:53.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:53.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:53.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:01:53.177][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:01:53.178][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:01:53.179][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:01:53.183][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:01:53.184][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:01:53.185][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:01:53.185][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:01:53.186][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:53.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:53.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:53.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:53.190][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:53.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:53.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:53.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:53.194][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:53.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:53.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:53.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:01:53.197][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:01:53.198][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:01:53.199][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:01:53.202][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:01:53.203][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:01:53.204][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:01:53.205][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:01:53.206][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:53.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:53.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:53.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:53.210][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:53.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:53.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:53.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:53.213][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:53.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:53.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:53.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:01:53.217][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:01:53.218][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:01:53.218][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:01:53.222][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:01:53.223][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:01:53.224][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:01:53.225][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:01:53.226][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:53.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:53.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:53.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:53.229][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:53.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:53.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:53.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:53.233][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:53.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:53.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:53.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:01:53.237][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:01:53.238][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:01:53.238][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:01:53.242][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:01:53.243][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:01:53.244][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:01:53.245][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:01:53.246][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:53.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:53.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:53.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:53.250][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:53.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:53.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:53.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:53.253][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:53.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:53.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:53.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:01:53.257][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:01:53.258][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:01:53.259][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:01:53.263][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:01:53.263][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:01:53.264][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:01:53.265][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:01:53.266][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:53.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:53.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:53.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:53.270][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:53.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:53.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:53.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:53.273][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:53.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:53.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:53.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:01:53.277][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:01:53.278][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:01:53.279][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:01:53.283][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:01:53.283][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:01:53.284][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:01:53.285][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:01:53.286][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:53.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:53.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:53.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:53.290][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:53.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:53.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:53.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:53.294][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:53.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:53.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:53.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:01:53.297][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:01:53.298][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:01:53.299][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:01:53.303][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:01:53.304][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:01:53.304][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:01:53.305][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:01:53.306][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:53.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:53.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:53.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:53.310][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:53.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:53.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:53.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:53.318][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:53.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:53.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:53.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:01:53.322][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:01:53.323][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:01:53.324][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:01:53.328][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:01:53.329][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:01:53.329][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:01:53.330][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:01:53.331][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:53.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:53.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:53.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:53.335][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:53.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:53.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:53.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:53.338][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:53.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:53.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:53.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:01:53.342][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:01:53.343][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:01:53.344][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:01:53.348][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:01:53.348][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:01:53.349][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:01:53.350][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:01:53.351][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:53.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:53.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:53.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:53.355][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:53.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:53.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:53.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:53.358][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:53.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:53.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:53.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:01:53.362][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:01:53.363][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:01:53.364][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:01:53.368][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:01:53.369][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:01:53.370][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:01:53.370][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:01:53.371][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:53.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:53.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:53.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:53.375][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:53.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:53.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:53.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:53.379][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:53.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:53.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:53.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:01:53.382][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:01:53.383][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:01:53.384][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:01:53.388][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:01:53.389][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:01:53.390][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:01:53.391][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:01:53.392][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:53.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:53.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:53.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:53.395][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:53.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:53.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:53.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:53.399][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:53.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:53.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:53.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:53.414][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2025-06-28 16:01:53.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2025-06-28 16:01:53.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:53.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2025-06-28 16:01:53.423][biodb::testThat]
biodb.INFO [2025-06-28 16:01:53.424][biodb::testThat] Running test function test_annotateMzValues_input_vector (" annotateMzValues() accepts a single vector. ").
biodb.INFO [2025-06-28 16:01:53.425][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-06-28 16:01:53.426][biodb::testThat]
biodb.TRACE[2025-06-28 16:01:53.429][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-06-28 16:01:53.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-06-28 16:01:53.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:53.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:53.432][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-06-28 16:01:53.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-06-28 16:01:53.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:53.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:53.436][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-06-28 16:01:53.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-06-28 16:01:53.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:53.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:53.440][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:53.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:53.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:53.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:53.443][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:53.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:53.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:53.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:53.447][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:53.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:53.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:53.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:53.451][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:53.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:53.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:53.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:53.454][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:53.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:53.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:53.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:53.462][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:53.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:53.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:53.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:53.466][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:53.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:53.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:53.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:53.470][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:53.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:53.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:53.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:53.473][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:53.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:53.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:53.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:53.477][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:53.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:53.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:53.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:53.481][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:53.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:53.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:53.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:53.484][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:53.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:53.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:53.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:01:53.490][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:01:53.491][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:01:53.492][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:01:53.496][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:01:53.497][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:01:53.498][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:01:53.499][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-06-28 16:01:53.501][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-06-28 16:01:53.503][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-06-28 16:01:53.505][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/8fc54eee7e982ce554bee8000d8203f7.content.
sched.DEBUG[2025-06-28 16:01:53.506][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-06-28 16:01:53.508][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:01:53.509][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:01:53.510][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:01:53.514][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:01:53.515][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:01:53.516][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:01:53.516][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:01:53.518][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:53.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:53.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:53.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:53.521][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:53.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:53.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:53.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:53.525][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:53.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:53.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:53.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
sched.DEBUG[2025-06-28 16:01:53.529][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-06-28 16:01:53.531][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-06-28 16:01:53.533][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/6def615835d7c1dfccd5a5f135bd2f9d.content.
sched.DEBUG[2025-06-28 16:01:53.534][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-06-28 16:01:53.536][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:01:53.537][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:01:53.538][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:01:53.542][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:01:53.543][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:01:53.544][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:01:53.545][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:01:53.546][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:53.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:53.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:53.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:53.549][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:53.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:53.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:53.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:53.553][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:53.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:53.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:53.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:01:53.557][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:01:53.557][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:01:53.558][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:01:53.562][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:01:53.563][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:01:53.564][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:01:53.565][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:01:53.566][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:53.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:53.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:53.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:53.569][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:53.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:53.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:53.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:53.573][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:53.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:53.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:53.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:01:53.577][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-06-28 16:01:53.578][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:01:53.579][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:01:53.580][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:01:53.584][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:01:53.585][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:01:53.586][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:01:53.586][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:01:53.588][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:01:53.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:01:53.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:53.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:53.591][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:01:53.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:01:53.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:53.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:53.595][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:01:53.596][private$selectFields]
biodb.TRACE[2025-06-28 16:01:53.596][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-06-28 16:01:53.597][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-06-28 16:01:53.598][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:01:53.599][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:01:53.600][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:01:53.601][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:53.602][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:53.603][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:01:53.608][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:01:53.609][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:53.610][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:53.611][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:01:53.612][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:01:53.613][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:01:53.614][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:01:53.615][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:53.616][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:53.616][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-06-28 16:01:53.617][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:01:53.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:01:53.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:53.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:53.621][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:01:53.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:01:53.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:53.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:53.625][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:01:53.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:01:53.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:53.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:53.636][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [192288].
biodb.DEBUG[2025-06-28 16:01:53.637][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:01:53.638][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:01:53.639][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:01:53.643][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:01:53.644][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:01:53.645][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:01:53.646][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:01:53.647][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:01:53.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:01:53.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:53.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:53.650][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:01:53.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:01:53.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:53.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:53.654][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:01:53.655][private$selectFields]
biodb.TRACE[2025-06-28 16:01:53.656][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-06-28 16:01:53.657][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-06-28 16:01:53.658][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:01:53.658][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:01:53.659][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:01:53.660][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:53.661][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:53.662][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:01:53.663][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:01:53.664][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:53.665][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:53.666][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:01:53.667][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:01:53.668][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:01:53.668][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:01:53.669][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:53.670][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:53.671][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-06-28 16:01:53.672][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:01:53.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:01:53.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:53.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:53.676][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:01:53.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:01:53.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:53.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:53.679][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:01:53.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:01:53.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:53.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:53.683][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2025-06-28 16:01:53.684][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:01:53.685][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:01:53.686][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:01:53.690][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:01:53.691][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:01:53.692][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:01:53.693][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:01:53.694][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:01:53.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:01:53.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:53.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:53.697][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:01:53.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:01:53.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:53.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:53.701][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:01:53.702][private$selectFields]
biodb.TRACE[2025-06-28 16:01:53.703][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-06-28 16:01:53.703][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-06-28 16:01:53.704][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:01:53.705][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:01:53.706][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:01:53.707][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:53.708][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:53.709][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:01:53.710][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:01:53.711][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:53.712][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:53.712][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:01:53.713][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:01:53.714][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:01:53.715][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:01:53.716][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:53.717][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:53.718][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-06-28 16:01:53.719][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:01:53.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:01:53.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:53.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:53.723][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:01:53.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:01:53.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:53.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:53.726][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:01:53.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:01:53.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:53.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:53.730][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [209892].
biodb.DEBUG[2025-06-28 16:01:53.731][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-06-28 16:01:53.732][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-06-28 16:01:53.735][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:01:53.736][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:01:53.736][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:01:53.740][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:01:53.741][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:01:53.742][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:01:53.743][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-06-28 16:01:53.749][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-06-28 16:01:53.752][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
sched.DEBUG[2025-06-28 16:01:53.753][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-06-28 16:01:53.754][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-06-28 16:01:53.756][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
sched.TRACE[2025-06-28 16:01:54.362][try_get_rcurl_content] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
fscache.INFO [2025-06-28 16:01:54.715][private$cache$saveContents] Save 1 contents to /home/biocbuild/.cache/R/sched.
fscache.INFO [2025-06-28 16:01:54.756][private$cache$saveContents] Save 1 contents to /home/biocbuild/.cache/R/sched.
sched.DEBUG[2025-06-28 16:01:54.759][self$getBiodb()$getRequestScheduler( ...] Retrieved content saved to cache.
biodb.DEBUG[2025-06-28 16:01:54.763][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:01:54.764][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:01:54.766][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:01:54.773][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:01:54.774][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:01:54.775][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:01:54.777][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-28 16:01:54.778][private$loadEntries] Creating entries from ids [1]: "113227".
biodb.DEBUG[2025-06-28 16:01:54.780][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-06-28 16:01:54.782][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
biodb.DEBUG[2025-06-28 16:01:54.783][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-06-28 16:01:54.784][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-06-28 16:01:54.785][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-06-28 16:01:54.787][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-06-28 16:01:54.790][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:01:54.791][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:01:54.792][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:01:54.797][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:01:54.798][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:01:54.798][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:01:54.799][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-06-28 16:01:54.800][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=113227".
fscache.INFO [2025-06-28 16:01:54.802][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
sched.DEBUG[2025-06-28 16:01:54.817][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-06-28 16:01:54.818][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-06-28 16:01:54.820][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=113227".
sched.TRACE[2025-06-28 16:01:55.183][try_get_rcurl_content] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=113227).
fscache.INFO [2025-06-28 16:01:55.529][private$cache$saveContents] Save 1 contents to /home/biocbuild/.cache/R/sched.
fscache.INFO [2025-06-28 16:01:55.534][private$cache$saveContents] Save 1 contents to /home/biocbuild/.cache/R/sched.
sched.DEBUG[2025-06-28 16:01:55.536][scheduler$sendRequest] Retrieved content saved to cache.
fscache.INFO [2025-06-28 16:01:55.539][cch$saveContents] Save 1 contents to /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
biodb.DEBUG[2025-06-28 16:01:55.542][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-06-28 16:01:55.545][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-06-28 16:01:55.547][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-06-28 16:01:55.551][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:01:55.553][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:01:55.555][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:01:55.564][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:01:55.566][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:01:55.568][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:01:55.570][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:01:55.574][ef$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:01:55.576][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:01:55.578][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:55.580][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:55.582][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:01:55.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:01:55.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:55.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:55.588][ef$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:01:55.590][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:01:55.591][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:55.592][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:55.594][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:01:55.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:01:55.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:55.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:55.599][ef$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:01:55.601][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:01:55.602][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:55.603][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:55.604][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:01:55.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:01:55.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:55.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:55.609][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:01:55.610][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:01:55.611][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:55.612][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:55.613][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:01:55.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:01:55.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:55.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:55.617][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:01:55.618][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:01:55.619][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:55.620][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:55.626][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:01:55.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:01:55.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:55.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:55.636][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:01:55.637][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:01:55.638][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:55.639][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:55.640][ef$get] Asked field names are: mass.
biodb.TRACE[2025-06-28 16:01:55.641][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:55.642][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:55.643][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:55.644][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-06-28 16:01:55.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:55.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:55.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:55.648][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:55.649][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:55.649][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:55.650][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:55.651][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:55.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:55.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:55.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:55.655][ef$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:01:55.656][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:01:55.657][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:55.658][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:55.659][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:01:55.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:01:55.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:55.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:55.663][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-06-28 16:01:55.664][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:01:55.665][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:55.666][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:55.667][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-06-28 16:01:55.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:01:55.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:55.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:55.670][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:01:55.671][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:01:55.672][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:55.673][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:55.674][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:01:55.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:01:55.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:55.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:55.678][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:01:55.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:01:55.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:55.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:55.682][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:01:55.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:01:55.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:55.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:55.685][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:01:55.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:01:55.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:55.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:55.689][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:01:55.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:01:55.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:55.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:55.693][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:01:55.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:01:55.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:55.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:55.696][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:01:55.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:01:55.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:55.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:55.700][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:01:55.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:01:55.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:55.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:55.704][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:01:55.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:01:55.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:55.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:55.707][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:01:55.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:01:55.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:55.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:55.711][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:01:55.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:01:55.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:55.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:01:55.715][self$createEntryFromContent] Accession numbers: 113227.
biodb.TRACE[2025-06-28 16:01:55.716][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:55.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:55.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:55.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:55.720][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:55.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:55.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:55.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:55.723][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:55.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:55.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:55.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:01:55.727][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:01:55.728][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:01:55.729][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:01:55.733][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:01:55.734][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:01:55.735][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:01:55.736][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-28 16:01:55.737][private$loadEntries] Creating entries from ids [1]: "169712".
biodb.DEBUG[2025-06-28 16:01:55.738][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-06-28 16:01:55.739][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
biodb.DEBUG[2025-06-28 16:01:55.740][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-06-28 16:01:55.741][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-06-28 16:01:55.742][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-06-28 16:01:55.743][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-06-28 16:01:55.756][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:01:55.757][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:01:55.758][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:01:55.762][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:01:55.763][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:01:55.764][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:01:55.765][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-06-28 16:01:55.766][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=169712".
fscache.INFO [2025-06-28 16:01:55.768][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
sched.DEBUG[2025-06-28 16:01:55.769][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-06-28 16:01:55.769][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-06-28 16:01:55.775][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=169712".
sched.TRACE[2025-06-28 16:01:56.138][try_get_rcurl_content] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=169712).
fscache.INFO [2025-06-28 16:01:56.481][private$cache$saveContents] Save 1 contents to /home/biocbuild/.cache/R/sched.
fscache.INFO [2025-06-28 16:01:56.486][private$cache$saveContents] Save 1 contents to /home/biocbuild/.cache/R/sched.
sched.DEBUG[2025-06-28 16:01:56.489][scheduler$sendRequest] Retrieved content saved to cache.
fscache.INFO [2025-06-28 16:01:56.492][cch$saveContents] Save 1 contents to /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
biodb.DEBUG[2025-06-28 16:01:56.495][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-06-28 16:01:56.498][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-06-28 16:01:56.500][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-06-28 16:01:56.504][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:01:56.506][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:01:56.508][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:01:56.518][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:01:56.520][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:01:56.522][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:01:56.523][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:01:56.528][ef$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:01:56.530][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:01:56.531][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:56.533][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:56.535][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:01:56.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:01:56.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:56.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:56.541][ef$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:01:56.542][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:01:56.544][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:56.545][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:56.547][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:01:56.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:01:56.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:56.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:56.552][ef$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:01:56.553][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:01:56.555][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:56.556][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:56.565][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:01:56.568][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:01:56.569][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:56.570][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:56.572][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:01:56.573][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:01:56.574][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:56.575][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:56.577][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:01:56.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:01:56.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:56.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:56.581][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:01:56.582][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:01:56.583][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:56.584][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:56.586][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:01:56.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:01:56.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:56.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:56.590][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:01:56.591][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:01:56.592][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:56.593][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:56.595][ef$get] Asked field names are: mass.
biodb.TRACE[2025-06-28 16:01:56.596][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:56.597][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:56.598][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:56.599][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-06-28 16:01:56.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:56.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:56.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:56.603][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:56.605][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:56.606][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:56.607][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:56.608][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:56.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:56.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:56.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:56.612][ef$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:01:56.613][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:01:56.614][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:56.615][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:56.617][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:01:56.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:01:56.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:56.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:56.621][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-06-28 16:01:56.622][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:01:56.623][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:56.624][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:56.625][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-06-28 16:01:56.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:01:56.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:56.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:56.629][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:01:56.630][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:01:56.631][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:56.632][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:56.634][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:01:56.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:01:56.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:56.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:56.638][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:01:56.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:01:56.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:56.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:56.642][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:01:56.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:01:56.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:56.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:56.646][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:01:56.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:01:56.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:56.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:56.651][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:01:56.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:01:56.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:56.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:56.655][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:01:56.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:01:56.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:56.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:56.659][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:01:56.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:01:56.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:56.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:56.663][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:01:56.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:01:56.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:56.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:56.668][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:01:56.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:01:56.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:56.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:56.672][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:01:56.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:01:56.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:56.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:56.676][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:01:56.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:01:56.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:56.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:01:56.695][self$createEntryFromContent] Accession numbers: 169712.
biodb.TRACE[2025-06-28 16:01:56.700][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:56.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:56.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:56.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:56.705][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:56.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:56.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:56.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:56.709][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:56.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:56.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:56.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
sched.DEBUG[2025-06-28 16:01:56.714][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.63*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-06-28 16:01:56.717][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
sched.DEBUG[2025-06-28 16:01:56.718][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-06-28 16:01:56.719][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-06-28 16:01:56.721][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.63%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
sched.TRACE[2025-06-28 16:01:57.067][try_get_rcurl_content] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.63%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
fscache.INFO [2025-06-28 16:01:57.703][private$cache$saveContents] Save 1 contents to /home/biocbuild/.cache/R/sched.
fscache.INFO [2025-06-28 16:01:57.709][private$cache$saveContents] Save 1 contents to /home/biocbuild/.cache/R/sched.
sched.DEBUG[2025-06-28 16:01:57.712][self$getBiodb()$getRequestScheduler( ...] Retrieved content saved to cache.
biodb.DEBUG[2025-06-28 16:01:57.719][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:01:57.721][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:01:57.723][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:01:57.734][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:01:57.737][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:01:57.739][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:01:57.741][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-28 16:01:57.744][private$loadEntries] Creating entries from ids [1]: "4781".
biodb.DEBUG[2025-06-28 16:01:57.746][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-06-28 16:01:57.749][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
biodb.DEBUG[2025-06-28 16:01:57.751][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-06-28 16:01:57.753][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-06-28 16:01:57.755][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-06-28 16:01:57.756][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-06-28 16:01:57.760][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:01:57.762][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:01:57.763][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:01:57.769][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:01:57.770][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:01:57.771][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:01:57.772][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-06-28 16:01:57.774][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=4781".
fscache.INFO [2025-06-28 16:01:57.776][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
sched.DEBUG[2025-06-28 16:01:57.777][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-06-28 16:01:57.779][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-06-28 16:01:57.780][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=4781".
sched.TRACE[2025-06-28 16:01:58.167][try_get_rcurl_content] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=4781).
fscache.INFO [2025-06-28 16:01:58.595][private$cache$saveContents] Save 1 contents to /home/biocbuild/.cache/R/sched.
fscache.INFO [2025-06-28 16:01:58.600][private$cache$saveContents] Save 1 contents to /home/biocbuild/.cache/R/sched.
sched.DEBUG[2025-06-28 16:01:58.603][scheduler$sendRequest] Retrieved content saved to cache.
fscache.INFO [2025-06-28 16:01:58.606][cch$saveContents] Save 1 contents to /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
biodb.DEBUG[2025-06-28 16:01:58.608][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-06-28 16:01:58.611][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-06-28 16:01:58.614][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-06-28 16:01:58.617][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:01:58.619][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:01:58.621][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:01:58.631][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:01:58.633][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:01:58.635][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:01:58.637][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:01:58.642][ef$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:01:58.643][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:01:58.645][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:58.647][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:58.649][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:01:58.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:01:58.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:58.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:58.655][ef$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:01:58.657][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:01:58.658][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:58.659][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:58.661][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:01:58.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:01:58.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:58.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:58.666][ef$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:01:58.668][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:01:58.669][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:58.670][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:58.672][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:01:58.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:01:58.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:58.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:58.676][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:01:58.677][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:01:58.678][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:58.679][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:58.680][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:01:58.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:01:58.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:58.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:58.684][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:01:58.685][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:01:58.686][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:58.687][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:58.688][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:01:58.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:01:58.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:58.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:58.692][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:01:58.693][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:01:58.694][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:58.695][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:58.696][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:01:58.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:01:58.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:58.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:58.700][ef$get] Asked field names are: mass.
biodb.TRACE[2025-06-28 16:01:58.701][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:58.702][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:58.703][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:58.704][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-06-28 16:01:58.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:58.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:58.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:58.707][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:58.708][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:58.709][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:58.710][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:58.711][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:58.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:58.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:58.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:58.725][ef$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:01:58.727][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:01:58.727][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:58.728][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:58.730][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:01:58.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:01:58.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:58.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:58.733][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-06-28 16:01:58.734][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:01:58.735][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:58.736][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:58.737][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-06-28 16:01:58.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:01:58.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:58.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:58.741][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:01:58.742][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:01:58.743][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:58.743][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:58.744][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:01:58.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:01:58.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:58.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:58.748][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:01:58.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:01:58.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:58.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:58.752][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:01:58.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:01:58.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:58.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:58.755][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:01:58.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:01:58.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:58.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:58.759][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:01:58.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:01:58.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:58.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:58.763][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:01:58.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:01:58.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:58.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:58.766][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:01:58.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:01:58.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:58.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:58.770][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:01:58.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:01:58.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:58.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:58.774][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:01:58.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:01:58.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:58.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:58.777][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:01:58.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:01:58.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:58.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:58.781][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:01:58.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:01:58.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:58.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:01:58.785][self$createEntryFromContent] Accession numbers: 4781.
biodb.TRACE[2025-06-28 16:01:58.786][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:58.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:58.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:58.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:58.789][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:58.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:58.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:58.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:58.793][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:58.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:58.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:58.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:01:58.797][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:01:58.798][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:01:58.798][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:01:58.803][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:01:58.803][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:01:58.804][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:01:58.805][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-28 16:01:58.806][private$loadEntries] Creating entries from ids [1]: "16587".
biodb.DEBUG[2025-06-28 16:01:58.807][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-06-28 16:01:58.808][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
biodb.DEBUG[2025-06-28 16:01:58.809][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-06-28 16:01:58.810][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-06-28 16:01:58.811][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-06-28 16:01:58.812][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-06-28 16:01:58.814][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:01:58.815][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:01:58.816][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:01:58.820][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:01:58.821][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:01:58.822][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:01:58.823][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-06-28 16:01:58.824][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=16587".
fscache.INFO [2025-06-28 16:01:58.826][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
sched.DEBUG[2025-06-28 16:01:58.827][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-06-28 16:01:58.828][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-06-28 16:01:58.829][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=16587".
sched.TRACE[2025-06-28 16:01:59.236][try_get_rcurl_content] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=16587).
fscache.INFO [2025-06-28 16:01:59.599][private$cache$saveContents] Save 1 contents to /home/biocbuild/.cache/R/sched.
fscache.INFO [2025-06-28 16:01:59.604][private$cache$saveContents] Save 1 contents to /home/biocbuild/.cache/R/sched.
sched.DEBUG[2025-06-28 16:01:59.606][scheduler$sendRequest] Retrieved content saved to cache.
fscache.INFO [2025-06-28 16:01:59.609][cch$saveContents] Save 1 contents to /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
biodb.DEBUG[2025-06-28 16:01:59.612][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-06-28 16:01:59.615][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-06-28 16:01:59.617][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-06-28 16:01:59.621][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:01:59.623][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:01:59.625][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:01:59.634][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:01:59.636][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:01:59.638][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:01:59.640][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:01:59.644][ef$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:01:59.646][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:01:59.648][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:59.649][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:59.652][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:01:59.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:01:59.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:59.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:59.658][ef$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:01:59.659][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:01:59.661][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:59.662][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:59.672][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:01:59.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:01:59.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:59.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:59.677][ef$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:01:59.679][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:01:59.680][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:59.681][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:59.682][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:01:59.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:01:59.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:59.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:59.686][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:01:59.687][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:01:59.688][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:59.689][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:59.690][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:01:59.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:01:59.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:59.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:59.694][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:01:59.695][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:01:59.696][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:59.697][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:59.698][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:01:59.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:01:59.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:59.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:59.701][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:01:59.702][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:01:59.703][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:59.704][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:59.705][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:01:59.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:01:59.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:59.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:59.709][ef$get] Asked field names are: mass.
biodb.TRACE[2025-06-28 16:01:59.710][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:59.711][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:59.712][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:59.713][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-06-28 16:01:59.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:59.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:59.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:59.716][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:59.717][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:59.718][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:59.719][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:59.720][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:59.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:01:59.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:59.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:59.724][ef$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:01:59.725][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:01:59.726][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:59.727][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:59.728][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:01:59.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:01:59.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:59.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:59.732][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-06-28 16:01:59.733][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:01:59.734][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:59.734][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:59.736][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-06-28 16:01:59.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:01:59.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:59.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:59.739][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:01:59.740][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:01:59.741][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:59.742][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:59.743][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:01:59.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:01:59.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:59.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:59.747][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:01:59.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:01:59.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:59.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:59.751][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:01:59.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:01:59.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:59.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:59.754][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:01:59.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:01:59.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:59.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:59.758][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:01:59.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:01:59.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:59.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:59.761][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:01:59.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:01:59.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:59.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:59.765][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:01:59.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:01:59.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:59.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:59.769][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:01:59.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:01:59.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:59.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:59.773][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:01:59.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:01:59.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:59.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:59.776][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:01:59.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:01:59.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:59.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:59.780][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:01:59.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:01:59.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:59.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:01:59.783][self$createEntryFromContent] Accession numbers: 16587.
biodb.TRACE[2025-06-28 16:01:59.785][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:59.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:59.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:59.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:59.788][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:59.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:59.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:59.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:01:59.792][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:59.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:01:59.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:01:59.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:01:59.796][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:01:59.796][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:01:59.797][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:01:59.801][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:01:59.802][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:01:59.803][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:01:59.804][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-28 16:01:59.805][private$loadEntries] Creating entries from ids [1]: "19804".
biodb.DEBUG[2025-06-28 16:01:59.806][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-06-28 16:01:59.807][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
biodb.DEBUG[2025-06-28 16:01:59.808][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-06-28 16:01:59.809][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-06-28 16:01:59.810][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-06-28 16:01:59.811][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-06-28 16:01:59.818][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:01:59.818][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:01:59.819][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:01:59.824][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:01:59.824][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:01:59.825][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:01:59.826][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-06-28 16:01:59.827][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=19804".
fscache.INFO [2025-06-28 16:01:59.829][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
sched.DEBUG[2025-06-28 16:01:59.830][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-06-28 16:01:59.831][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-06-28 16:01:59.832][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=19804".
sched.TRACE[2025-06-28 16:02:00.192][try_get_rcurl_content] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=19804).
fscache.INFO [2025-06-28 16:02:00.545][private$cache$saveContents] Save 1 contents to /home/biocbuild/.cache/R/sched.
fscache.INFO [2025-06-28 16:02:00.550][private$cache$saveContents] Save 1 contents to /home/biocbuild/.cache/R/sched.
sched.DEBUG[2025-06-28 16:02:00.553][scheduler$sendRequest] Retrieved content saved to cache.
fscache.INFO [2025-06-28 16:02:00.556][cch$saveContents] Save 1 contents to /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
biodb.DEBUG[2025-06-28 16:02:00.558][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-06-28 16:02:00.561][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-06-28 16:02:00.563][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-06-28 16:02:00.567][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:02:00.569][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:02:00.571][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:02:00.580][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:02:00.582][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:02:00.584][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:02:00.586][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:02:00.590][ef$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:00.592][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:00.593][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:00.595][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:00.597][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:00.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:00.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:00.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:00.603][ef$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:02:00.604][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:02:00.605][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:00.607][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:00.608][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:02:00.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:02:00.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:00.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:00.614][ef$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:02:00.615][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:02:00.616][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:00.617][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:00.618][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:02:00.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:02:00.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:00.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:00.623][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:02:00.624][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:02:00.625][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:00.626][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:00.627][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:02:00.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:02:00.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:00.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:00.631][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:02:00.632][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:02:00.633][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:00.634][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:00.635][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:02:00.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:02:00.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:00.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:00.639][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:02:00.640][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:02:00.641][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:00.642][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:00.643][ef$get] Asked field names are: mass.
biodb.TRACE[2025-06-28 16:02:00.644][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:00.645][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:00.646][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:00.647][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-06-28 16:02:00.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:00.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:00.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:00.651][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:00.651][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:00.652][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:00.653][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:00.654][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:00.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:00.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:00.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:00.658][ef$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:02:00.659][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:02:00.660][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:00.661][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:00.662][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:02:00.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:02:00.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:00.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:00.666][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-06-28 16:02:00.667][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:02:00.668][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:00.668][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:00.670][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-06-28 16:02:00.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:02:00.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:00.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:00.673][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:02:00.674][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:02:00.675][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:00.676][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:00.677][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:02:00.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:02:00.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:00.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:00.681][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:00.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:00.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:00.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:00.685][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:00.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:00.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:00.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:00.688][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:00.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:00.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:00.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:00.692][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:00.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:00.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:00.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:00.696][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:00.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:00.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:00.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:00.699][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:00.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:00.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:00.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:00.707][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:00.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:00.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:00.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:00.715][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:00.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:00.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:00.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:00.718][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:00.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:00.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:00.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:00.722][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:00.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:00.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:00.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:02:00.725][self$createEntryFromContent] Accession numbers: 19804.
biodb.TRACE[2025-06-28 16:02:00.726][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:00.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:00.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:00.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:00.730][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:00.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:00.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:00.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:00.734][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:00.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:00.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:00.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:02:00.760][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-06-28 16:02:00.782][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:02:00.783][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:02:00.784][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:02:00.788][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:02:00.789][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:02:00.790][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:02:00.790][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:02:00.792][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:00.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:00.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:00.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:00.795][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:00.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:00.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:00.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:00.799][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:02:00.800][private$selectFields]
biodb.TRACE[2025-06-28 16:02:00.801][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-06-28 16:02:00.801][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-06-28 16:02:00.802][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:02:00.803][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:00.804][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:00.805][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:00.806][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:00.807][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:00.808][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:00.809][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:00.810][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:00.811][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:02:00.811][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:02:00.812][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:00.813][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:00.814][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:00.815][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:00.816][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-06-28 16:02:00.817][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:00.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:00.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:00.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:00.821][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:00.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:00.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:00.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:00.824][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:00.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:00.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:00.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:00.829][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2025-06-28 16:02:00.830][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:02:00.830][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:02:00.831][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:02:00.835][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:02:00.836][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:02:00.841][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:02:00.842][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:02:00.844][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:00.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:00.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:00.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:00.848][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:00.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:00.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:00.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:00.851][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:02:00.852][private$selectFields]
biodb.TRACE[2025-06-28 16:02:00.853][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-06-28 16:02:00.854][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-06-28 16:02:00.855][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:02:00.856][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:00.856][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:00.857][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:00.858][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:00.859][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:00.860][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:00.861][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:00.862][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:00.863][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:02:00.864][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:02:00.864][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:00.865][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:00.866][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:00.867][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:00.868][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-06-28 16:02:00.869][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:00.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:00.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:00.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:00.872][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:00.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:00.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:00.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:00.876][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:00.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:00.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:00.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:00.880][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [16587].
biodb.DEBUG[2025-06-28 16:02:00.881][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:02:00.882][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:02:00.883][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:02:00.887][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:02:00.888][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:02:00.889][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:02:00.889][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:02:00.890][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:00.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:00.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:00.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:00.894][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:00.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:00.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:00.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:00.898][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:02:00.899][private$selectFields]
biodb.TRACE[2025-06-28 16:02:00.899][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-06-28 16:02:00.900][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-06-28 16:02:00.901][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:02:00.902][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:00.903][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:00.904][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:00.905][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:00.906][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:00.907][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:00.908][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:00.908][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:00.909][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:02:00.910][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:02:00.911][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:00.912][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:00.913][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:00.914][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:00.915][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-06-28 16:02:00.916][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:00.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:00.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:00.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:00.919][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:00.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:00.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:00.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:00.923][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:00.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:00.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:00.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:00.927][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [19804].
biodb.DEBUG[2025-06-28 16:02:00.928][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-06-28 16:02:00.929][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-06-28 16:02:00.931][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:02:00.931][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:02:00.932][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:02:00.936][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:02:00.937][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:02:00.938][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:02:00.939][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-06-28 16:02:00.941][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-06-28 16:02:00.944][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
sched.DEBUG[2025-06-28 16:02:00.945][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-06-28 16:02:00.946][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-06-28 16:02:00.947][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
sched.TRACE[2025-06-28 16:02:01.293][try_get_rcurl_content] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
fscache.INFO [2025-06-28 16:02:01.641][private$cache$saveContents] Save 1 contents to /home/biocbuild/.cache/R/sched.
fscache.INFO [2025-06-28 16:02:01.647][private$cache$saveContents] Save 1 contents to /home/biocbuild/.cache/R/sched.
sched.DEBUG[2025-06-28 16:02:01.649][self$getBiodb()$getRequestScheduler( ...] Retrieved content saved to cache.
biodb.DEBUG[2025-06-28 16:02:01.654][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:02:01.656][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:02:01.658][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:02:01.668][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:02:01.670][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:02:01.672][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:02:01.674][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-28 16:02:01.676][private$loadEntries] Creating entries from ids [1]: "159630".
biodb.DEBUG[2025-06-28 16:02:01.678][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-06-28 16:02:01.681][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
biodb.DEBUG[2025-06-28 16:02:01.684][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-06-28 16:02:01.686][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-06-28 16:02:01.688][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-06-28 16:02:01.690][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-06-28 16:02:01.694][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:02:01.695][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:02:01.697][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:02:01.851][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:02:01.852][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:02:01.853][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:02:01.854][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-06-28 16:02:01.855][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=159630".
fscache.INFO [2025-06-28 16:02:01.857][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
sched.DEBUG[2025-06-28 16:02:01.858][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-06-28 16:02:01.859][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-06-28 16:02:01.860][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=159630".
sched.TRACE[2025-06-28 16:02:02.231][try_get_rcurl_content] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=159630).
fscache.INFO [2025-06-28 16:02:02.584][private$cache$saveContents] Save 1 contents to /home/biocbuild/.cache/R/sched.
fscache.INFO [2025-06-28 16:02:02.587][private$cache$saveContents] Save 1 contents to /home/biocbuild/.cache/R/sched.
sched.DEBUG[2025-06-28 16:02:02.588][scheduler$sendRequest] Retrieved content saved to cache.
fscache.INFO [2025-06-28 16:02:02.590][cch$saveContents] Save 1 contents to /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
biodb.DEBUG[2025-06-28 16:02:02.591][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-06-28 16:02:02.592][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-06-28 16:02:02.593][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-06-28 16:02:02.595][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:02:02.596][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:02:02.597][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:02:02.602][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:02:02.603][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:02:02.603][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:02:02.604][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:02:02.607][ef$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:02.608][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:02.609][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:02.610][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:02.611][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:02.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:02.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:02.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:02.615][ef$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:02:02.618][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:02:02.620][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:02.621][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:02.623][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:02:02.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:02:02.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:02.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:02.627][ef$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:02:02.628][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:02:02.629][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:02.630][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:02.632][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:02:02.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:02:02.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:02.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:02.636][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:02:02.637][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:02:02.638][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:02.639][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:02.640][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:02:02.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:02:02.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:02.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:02.644][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:02:02.645][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:02:02.645][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:02.646][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:02.647][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:02:02.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:02:02.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:02.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:02.651][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:02:02.652][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:02:02.653][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:02.654][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:02.655][ef$get] Asked field names are: mass.
biodb.TRACE[2025-06-28 16:02:02.656][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:02.657][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:02.657][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:02.658][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-06-28 16:02:02.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:02.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:02.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:02.662][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:02.663][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:02.664][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:02.665][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:02.666][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:02.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:02.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:02.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:02.669][ef$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:02:02.670][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:02:02.671][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:02.672][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:02.673][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:02:02.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:02:02.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:02.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:02.677][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-06-28 16:02:02.678][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:02:02.679][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:02.680][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:02.681][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-06-28 16:02:02.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:02:02.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:02.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:02.684][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:02:02.685][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:02:02.686][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:02.687][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:02.688][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:02:02.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:02:02.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:02.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:02.692][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:02.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:02.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:02.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:02.696][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:02.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:02.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:02.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:02.699][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:02.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:02.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:02.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:02.703][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:02.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:02.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:02.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:02.706][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:02.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:02.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:02.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:02.710][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:02.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:02.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:02.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:02.721][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:02.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:02.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:02.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:02.726][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:02.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:02.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:02.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:02.730][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:02.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:02.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:02.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:02.734][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:02.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:02.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:02.737][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:02:02.738][self$createEntryFromContent] Accession numbers: 159630.
biodb.TRACE[2025-06-28 16:02:02.740][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:02.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:02.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:02.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:02.744][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:02.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:02.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:02.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:02.748][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:02.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:02.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:02.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:02:02.753][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:02:02.754][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:02:02.755][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:02:02.762][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:02:02.763][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:02:02.764][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:02:02.765][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-28 16:02:02.766][private$loadEntries] Creating entries from ids [1]: "160202".
biodb.DEBUG[2025-06-28 16:02:02.767][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-06-28 16:02:02.769][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
biodb.DEBUG[2025-06-28 16:02:02.770][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-06-28 16:02:02.772][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-06-28 16:02:02.773][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-06-28 16:02:02.774][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-06-28 16:02:02.777][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:02:02.778][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:02:02.779][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:02:02.784][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:02:02.785][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:02:02.786][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:02:02.787][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-06-28 16:02:02.788][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=160202".
fscache.INFO [2025-06-28 16:02:02.791][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
sched.DEBUG[2025-06-28 16:02:02.792][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-06-28 16:02:02.793][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-06-28 16:02:02.795][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=160202".
sched.TRACE[2025-06-28 16:02:03.244][try_get_rcurl_content] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=160202).
fscache.INFO [2025-06-28 16:02:03.586][private$cache$saveContents] Save 1 contents to /home/biocbuild/.cache/R/sched.
fscache.INFO [2025-06-28 16:02:03.588][private$cache$saveContents] Save 1 contents to /home/biocbuild/.cache/R/sched.
sched.DEBUG[2025-06-28 16:02:03.590][scheduler$sendRequest] Retrieved content saved to cache.
fscache.INFO [2025-06-28 16:02:03.591][cch$saveContents] Save 1 contents to /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
biodb.DEBUG[2025-06-28 16:02:03.592][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-06-28 16:02:03.594][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-06-28 16:02:03.595][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-06-28 16:02:03.597][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:02:03.598][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:02:03.599][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:02:03.604][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:02:03.605][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:02:03.606][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:02:03.607][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:02:03.610][ef$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:03.611][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:03.612][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:03.613][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:03.614][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:03.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:03.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:03.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:03.618][ef$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:02:03.620][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:02:03.621][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:03.622][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:03.623][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:02:03.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:02:03.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:03.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:03.627][ef$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:02:03.628][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:02:03.629][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:03.630][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:03.632][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:02:03.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:02:03.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:03.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:03.636][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:02:03.637][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:02:03.638][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:03.639][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:03.641][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:02:03.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:02:03.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:03.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:03.645][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:02:03.646][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:02:03.647][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:03.648][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:03.649][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:02:03.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:02:03.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:03.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:03.654][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:02:03.655][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:02:03.656][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:03.657][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:03.658][ef$get] Asked field names are: mass.
biodb.TRACE[2025-06-28 16:02:03.659][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:03.660][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:03.661][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:03.662][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-06-28 16:02:03.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:03.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:03.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:03.685][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:03.686][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:03.687][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:03.688][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:03.689][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:03.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:03.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:03.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:03.693][ef$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:02:03.694][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:02:03.695][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:03.696][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:03.697][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:02:03.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:02:03.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:03.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:03.701][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-06-28 16:02:03.702][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:02:03.703][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:03.704][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:03.705][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-06-28 16:02:03.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:02:03.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:03.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:03.709][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:02:03.710][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:02:03.711][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:03.712][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:03.713][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:02:03.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:02:03.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:03.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:03.717][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:03.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:03.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:03.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:03.721][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:03.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:03.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:03.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:03.725][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:03.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:03.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:03.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:03.729][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:03.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:03.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:03.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:03.733][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:03.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:03.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:03.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:03.737][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:03.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:03.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:03.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:03.741][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:03.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:03.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:03.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:03.745][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:03.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:03.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:03.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:03.749][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:03.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:03.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:03.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:03.752][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:03.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:03.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:03.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:02:03.756][self$createEntryFromContent] Accession numbers: 160202.
biodb.TRACE[2025-06-28 16:02:03.757][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:03.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:03.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:03.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:03.761][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:03.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:03.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:03.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:03.765][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:03.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:03.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:03.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:02:03.769][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:02:03.770][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:02:03.771][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:02:03.776][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:02:03.776][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:02:03.777][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:02:03.778][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-28 16:02:03.779][private$loadEntries] Creating entries from ids [1]: "160393".
biodb.DEBUG[2025-06-28 16:02:03.780][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-06-28 16:02:03.782][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
biodb.DEBUG[2025-06-28 16:02:03.783][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-06-28 16:02:03.784][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-06-28 16:02:03.785][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-06-28 16:02:03.786][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-06-28 16:02:03.788][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:02:03.789][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:02:03.790][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:02:03.795][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:02:03.796][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:02:03.796][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:02:03.797][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-06-28 16:02:03.798][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=160393".
fscache.INFO [2025-06-28 16:02:03.800][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
sched.DEBUG[2025-06-28 16:02:03.802][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-06-28 16:02:03.802][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-06-28 16:02:03.804][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=160393".
sched.TRACE[2025-06-28 16:02:04.148][try_get_rcurl_content] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=160393).
fscache.INFO [2025-06-28 16:02:04.495][private$cache$saveContents] Save 1 contents to /home/biocbuild/.cache/R/sched.
fscache.INFO [2025-06-28 16:02:04.500][private$cache$saveContents] Save 1 contents to /home/biocbuild/.cache/R/sched.
sched.DEBUG[2025-06-28 16:02:04.503][scheduler$sendRequest] Retrieved content saved to cache.
fscache.INFO [2025-06-28 16:02:04.507][cch$saveContents] Save 1 contents to /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
biodb.DEBUG[2025-06-28 16:02:04.510][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-06-28 16:02:04.513][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-06-28 16:02:04.515][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-06-28 16:02:04.519][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:02:04.521][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:02:04.524][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:02:04.534][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:02:04.536][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:02:04.538][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:02:04.540][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:02:04.544][ef$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:04.545][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:04.547][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:04.549][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:04.550][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:04.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:04.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:04.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:04.556][ef$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:02:04.558][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:02:04.559][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:04.561][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:04.562][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:02:04.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:02:04.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:04.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:04.567][ef$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:02:04.568][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:02:04.569][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:04.571][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:04.572][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:02:04.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:02:04.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:04.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:04.577][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:02:04.578][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:02:04.579][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:04.580][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:04.581][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:02:04.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:02:04.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:04.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:04.585][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:02:04.586][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:02:04.587][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:04.587][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:04.589][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:02:04.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:02:04.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:04.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:04.592][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:02:04.593][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:02:04.594][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:04.595][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:04.596][ef$get] Asked field names are: mass.
biodb.TRACE[2025-06-28 16:02:04.597][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:04.598][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:04.599][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:04.600][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-06-28 16:02:04.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:04.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:04.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:04.604][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:04.605][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:04.606][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:04.606][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:04.607][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:04.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:04.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:04.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:04.611][ef$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:02:04.612][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:02:04.613][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:04.614][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:04.615][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:02:04.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:02:04.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:04.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:04.619][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-06-28 16:02:04.620][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:02:04.621][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:04.622][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:04.623][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-06-28 16:02:04.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:02:04.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:04.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:04.626][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:02:04.627][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:02:04.628][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:04.629][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:04.630][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:02:04.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:02:04.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:04.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:04.634][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:04.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:04.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:04.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:04.638][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:04.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:04.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:04.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:04.641][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:04.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:04.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:04.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:04.645][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:04.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:04.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:04.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:04.649][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:04.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:04.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:04.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:04.652][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:04.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:04.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:04.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:04.656][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:04.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:04.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:04.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:04.660][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:04.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:04.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:04.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:04.663][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:04.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:04.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:04.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:04.667][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:04.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:04.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:04.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:02:04.671][self$createEntryFromContent] Accession numbers: 160393.
biodb.TRACE[2025-06-28 16:02:04.672][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:04.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:04.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:04.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:04.675][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:04.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:04.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:04.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:04.686][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:04.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:04.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:04.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:02:04.690][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:02:04.690][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:02:04.691][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:02:04.695][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:02:04.696][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:02:04.697][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:02:04.698][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-28 16:02:04.699][private$loadEntries] Creating entries from ids [1]: "160991".
biodb.DEBUG[2025-06-28 16:02:04.700][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-06-28 16:02:04.701][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
biodb.DEBUG[2025-06-28 16:02:04.702][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-06-28 16:02:04.703][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-06-28 16:02:04.704][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-06-28 16:02:04.705][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-06-28 16:02:04.707][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:02:04.708][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:02:04.708][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:02:04.712][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:02:04.713][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:02:04.714][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:02:04.715][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-06-28 16:02:04.716][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=160991".
fscache.INFO [2025-06-28 16:02:04.718][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
sched.DEBUG[2025-06-28 16:02:04.719][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-06-28 16:02:04.719][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-06-28 16:02:04.721][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=160991".
sched.TRACE[2025-06-28 16:02:05.067][try_get_rcurl_content] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=160991).
fscache.INFO [2025-06-28 16:02:05.409][private$cache$saveContents] Save 1 contents to /home/biocbuild/.cache/R/sched.
fscache.INFO [2025-06-28 16:02:05.411][private$cache$saveContents] Save 1 contents to /home/biocbuild/.cache/R/sched.
sched.DEBUG[2025-06-28 16:02:05.413][scheduler$sendRequest] Retrieved content saved to cache.
fscache.INFO [2025-06-28 16:02:05.414][cch$saveContents] Save 1 contents to /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
biodb.DEBUG[2025-06-28 16:02:05.415][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-06-28 16:02:05.416][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-06-28 16:02:05.418][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-06-28 16:02:05.419][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:02:05.420][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:02:05.421][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:02:05.426][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:02:05.427][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:02:05.427][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:02:05.429][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:02:05.433][ef$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:05.434][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:05.436][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:05.437][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:05.439][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:05.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:05.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:05.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:05.445][ef$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:02:05.446][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:02:05.448][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:05.449][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:05.450][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:02:05.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:02:05.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:05.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:05.455][ef$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:02:05.456][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:02:05.457][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:05.459][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:05.460][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:02:05.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:02:05.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:05.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:05.465][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:02:05.466][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:02:05.467][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:05.467][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:05.469][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:02:05.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:02:05.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:05.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:05.473][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:02:05.474][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:02:05.475][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:05.475][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:05.477][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:02:05.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:02:05.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:05.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:05.481][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:02:05.482][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:02:05.482][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:05.483][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:05.485][ef$get] Asked field names are: mass.
biodb.TRACE[2025-06-28 16:02:05.486][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:05.487][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:05.487][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:05.489][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-06-28 16:02:05.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:05.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:05.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:05.493][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:05.494][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:05.494][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:05.495][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:05.497][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:05.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:05.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:05.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:05.500][ef$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:02:05.501][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:02:05.502][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:05.503][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:05.505][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:02:05.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:02:05.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:05.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:05.509][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-06-28 16:02:05.510][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:02:05.511][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:05.512][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:05.513][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-06-28 16:02:05.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:02:05.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:05.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:05.517][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:02:05.518][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:02:05.519][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:05.520][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:05.521][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:02:05.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:02:05.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:05.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:05.525][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:05.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:05.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:05.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:05.529][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:05.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:05.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:05.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:05.533][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:05.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:05.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:05.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:05.536][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:05.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:05.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:05.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:05.540][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:05.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:05.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:05.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:05.544][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:05.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:05.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:05.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:05.548][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:05.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:05.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:05.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:05.552][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:05.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:05.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:05.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:05.556][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:05.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:05.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:05.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:05.560][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:05.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:05.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:05.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:02:05.564][self$createEntryFromContent] Accession numbers: 160991.
biodb.TRACE[2025-06-28 16:02:05.565][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:05.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:05.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:05.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:05.569][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:05.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:05.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:05.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:05.572][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:05.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:05.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:05.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:02:05.576][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:02:05.577][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:02:05.578][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:02:05.583][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:02:05.584][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:02:05.585][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:02:05.586][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-28 16:02:05.587][private$loadEntries] Creating entries from ids [1]: "164975".
biodb.DEBUG[2025-06-28 16:02:05.588][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-06-28 16:02:05.589][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
biodb.DEBUG[2025-06-28 16:02:05.591][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-06-28 16:02:05.592][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-06-28 16:02:05.593][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-06-28 16:02:05.594][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-06-28 16:02:05.596][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:02:05.597][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:02:05.598][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:02:05.603][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:02:05.604][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:02:05.605][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:02:05.605][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-06-28 16:02:05.607][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=164975".
fscache.INFO [2025-06-28 16:02:05.609][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
sched.DEBUG[2025-06-28 16:02:05.610][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-06-28 16:02:05.611][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-06-28 16:02:05.612][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=164975".
sched.TRACE[2025-06-28 16:02:05.954][try_get_rcurl_content] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=164975).
fscache.INFO [2025-06-28 16:02:06.300][private$cache$saveContents] Save 1 contents to /home/biocbuild/.cache/R/sched.
fscache.INFO [2025-06-28 16:02:06.305][private$cache$saveContents] Save 1 contents to /home/biocbuild/.cache/R/sched.
sched.DEBUG[2025-06-28 16:02:06.308][scheduler$sendRequest] Retrieved content saved to cache.
fscache.INFO [2025-06-28 16:02:06.311][cch$saveContents] Save 1 contents to /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
biodb.DEBUG[2025-06-28 16:02:06.313][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-06-28 16:02:06.316][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-06-28 16:02:06.318][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-06-28 16:02:06.322][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:02:06.324][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:02:06.326][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:02:06.336][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:02:06.338][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:02:06.340][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:02:06.341][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:02:06.345][ef$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:06.347][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:06.349][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:06.350][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:06.352][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:06.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:06.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:06.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:06.358][ef$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:02:06.360][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:02:06.361][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:06.362][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:06.364][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:02:06.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:02:06.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:06.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:06.369][ef$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:02:06.370][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:02:06.371][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:06.383][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:06.385][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:02:06.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:02:06.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:06.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:06.389][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:02:06.390][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:02:06.391][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:06.391][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:06.393][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:02:06.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:02:06.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:06.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:06.396][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:02:06.397][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:02:06.398][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:06.399][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:06.400][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:02:06.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:02:06.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:06.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:06.404][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:02:06.404][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:02:06.405][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:06.406][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:06.407][ef$get] Asked field names are: mass.
biodb.TRACE[2025-06-28 16:02:06.408][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:06.409][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:06.410][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:06.411][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-06-28 16:02:06.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:06.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:06.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:06.415][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:06.416][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:06.416][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:06.417][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:06.418][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:06.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:06.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:06.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:06.422][ef$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:02:06.423][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:02:06.424][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:06.425][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:06.426][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:02:06.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:02:06.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:06.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:06.429][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-06-28 16:02:06.430][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:02:06.431][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:06.432][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:06.433][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-06-28 16:02:06.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:02:06.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:06.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:06.437][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:02:06.438][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:02:06.439][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:06.439][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:06.440][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:02:06.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:02:06.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:06.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:06.444][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:06.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:06.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:06.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:06.448][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:06.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:06.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:06.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:06.451][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:06.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:06.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:06.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:06.455][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:06.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:06.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:06.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:06.458][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:06.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:06.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:06.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:06.462][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:06.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:06.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:06.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:06.465][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:06.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:06.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:06.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:06.469][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:06.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:06.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:06.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:06.473][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:06.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:06.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:06.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:06.476][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:06.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:06.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:06.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:02:06.480][self$createEntryFromContent] Accession numbers: 164975.
biodb.TRACE[2025-06-28 16:02:06.481][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:06.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:06.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:06.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:06.484][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:06.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:06.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:06.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:06.488][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:06.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:06.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:06.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:02:06.491][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:02:06.492][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:02:06.493][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:02:06.497][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:02:06.498][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:02:06.499][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:02:06.500][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-28 16:02:06.501][private$loadEntries] Creating entries from ids [1]: "164994".
biodb.DEBUG[2025-06-28 16:02:06.502][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-06-28 16:02:06.503][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
biodb.DEBUG[2025-06-28 16:02:06.504][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-06-28 16:02:06.505][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-06-28 16:02:06.506][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-06-28 16:02:06.507][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-06-28 16:02:06.509][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:02:06.510][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:02:06.511][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:02:06.515][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:02:06.516][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:02:06.517][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:02:06.517][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-06-28 16:02:06.518][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=164994".
fscache.INFO [2025-06-28 16:02:06.520][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
sched.DEBUG[2025-06-28 16:02:06.521][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-06-28 16:02:06.522][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-06-28 16:02:06.523][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=164994".
sched.TRACE[2025-06-28 16:02:06.866][try_get_rcurl_content] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=164994).
fscache.INFO [2025-06-28 16:02:07.219][private$cache$saveContents] Save 1 contents to /home/biocbuild/.cache/R/sched.
fscache.INFO [2025-06-28 16:02:07.224][private$cache$saveContents] Save 1 contents to /home/biocbuild/.cache/R/sched.
sched.DEBUG[2025-06-28 16:02:07.227][scheduler$sendRequest] Retrieved content saved to cache.
fscache.INFO [2025-06-28 16:02:07.230][cch$saveContents] Save 1 contents to /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
biodb.DEBUG[2025-06-28 16:02:07.232][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-06-28 16:02:07.235][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-06-28 16:02:07.238][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-06-28 16:02:07.241][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:02:07.243][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:02:07.245][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:02:07.255][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:02:07.257][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:02:07.258][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:02:07.260][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:02:07.265][ef$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:07.267][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:07.269][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:07.270][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:07.272][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:07.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:07.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:07.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:07.278][ef$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:02:07.280][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:02:07.281][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:07.283][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:07.284][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:02:07.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:02:07.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:07.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:07.290][ef$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:02:07.291][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:02:07.292][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:07.293][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:07.295][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:02:07.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:02:07.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:07.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:07.299][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:02:07.301][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:02:07.302][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:07.303][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:07.304][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:02:07.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:02:07.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:07.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:07.308][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:02:07.309][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:02:07.310][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:07.311][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:07.312][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:02:07.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:02:07.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:07.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:07.315][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:02:07.316][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:02:07.317][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:07.318][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:07.319][ef$get] Asked field names are: mass.
biodb.TRACE[2025-06-28 16:02:07.320][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:07.321][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:07.322][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:07.323][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-06-28 16:02:07.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:07.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:07.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:07.327][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:07.328][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:07.329][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:07.330][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:07.331][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:07.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:07.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:07.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:07.334][ef$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:02:07.335][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:02:07.336][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:07.337][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:07.338][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:02:07.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:02:07.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:07.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:07.342][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-06-28 16:02:07.343][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:02:07.344][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:07.345][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:07.346][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-06-28 16:02:07.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:02:07.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:07.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:07.349][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:02:07.350][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:02:07.351][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:07.352][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:07.353][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:02:07.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:02:07.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:07.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:07.357][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:07.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:07.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:07.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:07.360][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:07.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:07.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:07.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:07.364][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:07.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:07.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:07.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:07.367][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:07.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:07.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:07.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:07.378][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:07.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:07.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:07.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:07.382][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:07.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:07.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:07.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:07.385][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:07.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:07.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:07.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:07.389][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:07.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:07.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:07.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:07.393][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:07.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:07.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:07.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:07.396][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:07.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:07.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:07.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:02:07.400][self$createEntryFromContent] Accession numbers: 164994.
biodb.TRACE[2025-06-28 16:02:07.401][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:07.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:07.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:07.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:07.404][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:07.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:07.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:07.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:07.408][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:07.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:07.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:07.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:02:07.411][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:02:07.412][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:02:07.413][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:02:07.417][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:02:07.418][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:02:07.419][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:02:07.419][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-28 16:02:07.420][private$loadEntries] Creating entries from ids [1]: "169251".
biodb.DEBUG[2025-06-28 16:02:07.421][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-06-28 16:02:07.423][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
biodb.DEBUG[2025-06-28 16:02:07.423][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-06-28 16:02:07.424][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-06-28 16:02:07.425][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-06-28 16:02:07.426][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-06-28 16:02:07.429][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:02:07.429][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:02:07.430][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:02:07.434][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:02:07.435][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:02:07.436][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:02:07.437][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-06-28 16:02:07.438][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=169251".
fscache.INFO [2025-06-28 16:02:07.439][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
sched.DEBUG[2025-06-28 16:02:07.440][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-06-28 16:02:07.441][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-06-28 16:02:07.442][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=169251".
sched.TRACE[2025-06-28 16:02:07.784][try_get_rcurl_content] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=169251).
fscache.INFO [2025-06-28 16:02:08.127][private$cache$saveContents] Save 1 contents to /home/biocbuild/.cache/R/sched.
fscache.INFO [2025-06-28 16:02:08.132][private$cache$saveContents] Save 1 contents to /home/biocbuild/.cache/R/sched.
sched.DEBUG[2025-06-28 16:02:08.135][scheduler$sendRequest] Retrieved content saved to cache.
fscache.INFO [2025-06-28 16:02:08.138][cch$saveContents] Save 1 contents to /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
biodb.DEBUG[2025-06-28 16:02:08.141][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-06-28 16:02:08.143][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-06-28 16:02:08.146][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-06-28 16:02:08.149][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:02:08.151][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:02:08.153][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:02:08.163][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:02:08.165][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:02:08.167][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:02:08.169][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:02:08.173][ef$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:08.175][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:08.177][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:08.179][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:08.181][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:08.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:08.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:08.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:08.188][ef$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:02:08.190][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:02:08.191][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:08.193][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:08.194][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:02:08.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:02:08.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:08.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:08.200][ef$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:02:08.201][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:02:08.202][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:08.204][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:08.205][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:02:08.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:02:08.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:08.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:08.210][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:02:08.211][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:02:08.212][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:08.213][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:08.214][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:02:08.215][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:02:08.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:08.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:08.219][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:02:08.220][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:02:08.221][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:08.222][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:08.223][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:02:08.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:02:08.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:08.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:08.226][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:02:08.227][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:02:08.228][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:08.229][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:08.230][ef$get] Asked field names are: mass.
biodb.TRACE[2025-06-28 16:02:08.231][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:08.232][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:08.233][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:08.234][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-06-28 16:02:08.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:08.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:08.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:08.238][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:08.239][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:08.240][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:08.241][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:08.242][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:08.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:08.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:08.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:08.245][ef$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:02:08.246][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:02:08.247][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:08.248][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:08.249][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:02:08.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:02:08.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:08.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:08.253][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-06-28 16:02:08.254][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:02:08.255][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:08.256][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:08.257][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-06-28 16:02:08.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:02:08.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:08.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:08.261][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:02:08.261][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:02:08.262][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:08.263][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:08.264][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:02:08.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:02:08.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:08.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:08.268][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:08.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:08.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:08.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:08.272][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:08.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:08.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:08.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:08.275][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:08.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:08.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:08.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:08.279][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:08.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:08.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:08.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:08.283][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:08.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:08.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:08.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:08.286][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:08.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:08.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:08.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:08.290][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:08.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:08.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:08.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:08.294][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:08.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:08.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:08.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:08.297][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:08.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:08.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:08.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:08.301][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:08.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:08.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:08.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:02:08.305][self$createEntryFromContent] Accession numbers: 169251.
biodb.TRACE[2025-06-28 16:02:08.306][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:08.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:08.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:08.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:08.309][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:08.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:08.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:08.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:08.313][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:08.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:08.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:08.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:02:08.317][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:02:08.318][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:02:08.318][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:02:08.323][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:02:08.323][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:02:08.324][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:02:08.325][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-28 16:02:08.326][private$loadEntries] Creating entries from ids [1]: "224261".
biodb.DEBUG[2025-06-28 16:02:08.327][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-06-28 16:02:08.328][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
biodb.DEBUG[2025-06-28 16:02:08.329][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-06-28 16:02:08.330][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-06-28 16:02:08.331][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-06-28 16:02:08.332][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-06-28 16:02:08.334][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:02:08.335][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:02:08.336][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:02:08.340][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:02:08.341][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:02:08.342][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:02:08.342][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-06-28 16:02:08.343][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=224261".
fscache.INFO [2025-06-28 16:02:08.345][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
sched.DEBUG[2025-06-28 16:02:08.346][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-06-28 16:02:08.347][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-06-28 16:02:08.348][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=224261".
sched.TRACE[2025-06-28 16:02:08.691][try_get_rcurl_content] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=224261).
fscache.INFO [2025-06-28 16:02:09.073][private$cache$saveContents] Save 1 contents to /home/biocbuild/.cache/R/sched.
fscache.INFO [2025-06-28 16:02:09.076][private$cache$saveContents] Save 1 contents to /home/biocbuild/.cache/R/sched.
sched.DEBUG[2025-06-28 16:02:09.077][scheduler$sendRequest] Retrieved content saved to cache.
fscache.INFO [2025-06-28 16:02:09.078][cch$saveContents] Save 1 contents to /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
biodb.DEBUG[2025-06-28 16:02:09.080][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-06-28 16:02:09.081][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-06-28 16:02:09.093][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-06-28 16:02:09.095][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:02:09.097][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:02:09.098][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:02:09.114][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:02:09.116][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:02:09.118][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:02:09.119][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:02:09.123][ef$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:09.125][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:09.126][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:09.127][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:09.128][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:09.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:09.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:09.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:09.133][ef$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:02:09.134][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:02:09.135][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:09.136][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:09.138][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:02:09.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:02:09.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:09.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:09.142][ef$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:02:09.143][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:02:09.144][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:09.145][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:09.147][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:02:09.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:02:09.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:09.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:09.151][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:02:09.152][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:02:09.153][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:09.154][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:09.155][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:02:09.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:02:09.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:09.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:09.159][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:02:09.161][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:02:09.162][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:09.162][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:09.164][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:02:09.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:02:09.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:09.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:09.168][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:02:09.169][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:02:09.170][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:09.171][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:09.172][ef$get] Asked field names are: mass.
biodb.TRACE[2025-06-28 16:02:09.173][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:09.174][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:09.175][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:09.177][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-06-28 16:02:09.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:09.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:09.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:09.181][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:09.182][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:09.183][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:09.184][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:09.185][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:09.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:09.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:09.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:09.189][ef$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:02:09.190][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:02:09.191][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:09.192][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:09.193][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:02:09.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:02:09.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:09.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:09.198][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-06-28 16:02:09.199][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:02:09.200][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:09.201][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:09.202][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-06-28 16:02:09.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:02:09.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:09.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:09.206][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:02:09.207][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:02:09.208][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:09.209][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:09.210][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:02:09.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:02:09.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:09.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:09.215][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:09.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:09.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:09.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:09.219][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:09.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:09.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:09.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:09.223][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:09.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:09.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:09.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:09.227][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:09.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:09.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:09.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:09.231][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:09.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:09.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:09.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:09.235][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:09.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:09.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:09.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:09.239][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:09.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:09.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:09.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:09.244][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:09.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:09.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:09.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:09.248][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:09.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:09.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:09.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:09.253][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:09.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:09.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:09.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:02:09.257][self$createEntryFromContent] Accession numbers: 224261.
biodb.TRACE[2025-06-28 16:02:09.258][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:09.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:09.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:09.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:09.262][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:09.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:09.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:09.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:09.266][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:09.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:09.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:09.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
sched.DEBUG[2025-06-28 16:02:09.271][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-06-28 16:02:09.274][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
sched.DEBUG[2025-06-28 16:02:09.275][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-06-28 16:02:09.276][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-06-28 16:02:09.278][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
sched.TRACE[2025-06-28 16:02:09.620][try_get_rcurl_content] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
fscache.INFO [2025-06-28 16:02:09.966][private$cache$saveContents] Save 1 contents to /home/biocbuild/.cache/R/sched.
fscache.INFO [2025-06-28 16:02:09.973][private$cache$saveContents] Save 1 contents to /home/biocbuild/.cache/R/sched.
sched.DEBUG[2025-06-28 16:02:09.976][self$getBiodb()$getRequestScheduler( ...] Retrieved content saved to cache.
biodb.DEBUG[2025-06-28 16:02:09.982][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:02:09.984][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:02:09.987][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:02:09.999][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:02:10.001][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:02:10.003][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:02:10.006][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:02:10.008][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:10.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:10.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:10.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:10.018][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:10.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:10.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:10.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:10.025][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:10.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:10.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:10.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:02:10.032][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:02:10.034][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:02:10.035][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:02:10.041][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:02:10.043][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:02:10.044][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:02:10.045][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-28 16:02:10.047][private$loadEntries] Creating entries from ids [1]: "71954".
biodb.DEBUG[2025-06-28 16:02:10.048][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-06-28 16:02:10.050][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
biodb.DEBUG[2025-06-28 16:02:10.051][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-06-28 16:02:10.052][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-06-28 16:02:10.053][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-06-28 16:02:10.055][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-06-28 16:02:10.058][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:02:10.059][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:02:10.060][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:02:10.064][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:02:10.065][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:02:10.066][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:02:10.067][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-06-28 16:02:10.068][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=71954".
fscache.INFO [2025-06-28 16:02:10.070][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
sched.DEBUG[2025-06-28 16:02:10.072][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-06-28 16:02:10.073][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-06-28 16:02:10.074][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=71954".
sched.TRACE[2025-06-28 16:02:10.418][try_get_rcurl_content] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=71954).
fscache.INFO [2025-06-28 16:02:10.768][private$cache$saveContents] Save 1 contents to /home/biocbuild/.cache/R/sched.
fscache.INFO [2025-06-28 16:02:10.771][private$cache$saveContents] Save 1 contents to /home/biocbuild/.cache/R/sched.
sched.DEBUG[2025-06-28 16:02:10.773][scheduler$sendRequest] Retrieved content saved to cache.
fscache.INFO [2025-06-28 16:02:10.775][cch$saveContents] Save 1 contents to /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
biodb.DEBUG[2025-06-28 16:02:10.776][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-06-28 16:02:10.778][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-06-28 16:02:10.780][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-06-28 16:02:10.782][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:02:10.783][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:02:10.785][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:02:10.791][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:02:10.792][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:02:10.793][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:02:10.794][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:02:10.796][ef$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:10.797][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:10.798][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:10.799][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:10.801][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:10.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:10.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:10.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:10.805][ef$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:02:10.806][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:02:10.807][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:10.808][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:10.809][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:02:10.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:02:10.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:10.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:10.813][ef$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:02:10.814][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:02:10.815][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:10.816][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:10.817][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:02:10.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:02:10.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:10.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:10.821][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:02:10.822][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:02:10.823][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:10.824][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:10.825][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:02:10.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:02:10.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:10.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:10.845][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:02:10.846][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:02:10.847][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:10.847][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:10.849][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:02:10.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:02:10.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:10.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:10.852][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:02:10.853][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:02:10.854][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:10.855][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:10.856][ef$get] Asked field names are: mass.
biodb.TRACE[2025-06-28 16:02:10.857][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:10.858][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:10.859][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:10.860][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-06-28 16:02:10.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:10.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:10.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:10.864][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:10.864][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:10.865][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:10.866][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:10.867][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:10.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:10.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:10.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:10.871][ef$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:02:10.872][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:02:10.873][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:10.873][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:10.875][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:02:10.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:02:10.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:10.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:10.878][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-06-28 16:02:10.879][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:02:10.880][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:10.881][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:10.882][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-06-28 16:02:10.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:02:10.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:10.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:10.886][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:02:10.887][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:02:10.887][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:10.888][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:10.889][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:02:10.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:02:10.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:10.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:10.893][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:10.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:10.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:10.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:10.897][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:10.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:10.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:10.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:10.900][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:10.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:10.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:10.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:10.904][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:10.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:10.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:10.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:10.907][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:10.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:10.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:10.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:10.911][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:10.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:10.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:10.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:10.914][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:10.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:10.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:10.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:10.918][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:10.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:10.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:10.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:10.921][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:10.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:10.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:10.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:10.925][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:10.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:10.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:10.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:02:10.929][self$createEntryFromContent] Accession numbers: 71954.
biodb.TRACE[2025-06-28 16:02:10.930][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:10.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:10.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:10.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:10.933][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:10.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:10.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:10.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:10.937][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:10.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:10.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:10.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:02:10.940][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:02:10.941][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:02:10.942][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:02:10.946][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:02:10.947][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:02:10.948][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:02:10.949][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-28 16:02:10.950][private$loadEntries] Creating entries from ids [1]: "197612".
biodb.DEBUG[2025-06-28 16:02:10.951][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-06-28 16:02:10.952][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
biodb.DEBUG[2025-06-28 16:02:10.953][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-06-28 16:02:10.954][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-06-28 16:02:10.955][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-06-28 16:02:10.956][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-06-28 16:02:10.958][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:02:10.959][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:02:10.960][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:02:10.964][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:02:10.965][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:02:10.966][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:02:10.966][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-06-28 16:02:10.967][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=197612".
fscache.INFO [2025-06-28 16:02:10.969][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
sched.DEBUG[2025-06-28 16:02:10.970][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-06-28 16:02:10.971][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-06-28 16:02:10.972][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=197612".
sched.TRACE[2025-06-28 16:02:11.312][try_get_rcurl_content] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=197612).
fscache.INFO [2025-06-28 16:02:11.655][private$cache$saveContents] Save 1 contents to /home/biocbuild/.cache/R/sched.
fscache.INFO [2025-06-28 16:02:11.658][private$cache$saveContents] Save 1 contents to /home/biocbuild/.cache/R/sched.
sched.DEBUG[2025-06-28 16:02:11.659][scheduler$sendRequest] Retrieved content saved to cache.
fscache.INFO [2025-06-28 16:02:11.660][cch$saveContents] Save 1 contents to /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
biodb.DEBUG[2025-06-28 16:02:11.661][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-06-28 16:02:11.662][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-06-28 16:02:11.663][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-06-28 16:02:11.665][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:02:11.666][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:02:11.666][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:02:11.671][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:02:11.672][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:02:11.672][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:02:11.673][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:02:11.675][ef$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:11.676][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:11.677][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:11.678][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:11.679][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:11.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:11.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:11.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:11.683][ef$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:02:11.684][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:02:11.685][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:11.686][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:11.687][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:02:11.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:02:11.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:11.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:11.691][ef$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:02:11.692][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:02:11.692][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:11.693][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:11.695][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:02:11.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:02:11.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:11.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:11.698][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:02:11.699][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:02:11.700][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:11.701][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:11.702][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:02:11.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:02:11.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:11.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:11.706][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:02:11.707][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:02:11.708][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:11.708][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:11.710][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:02:11.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:02:11.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:11.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:11.713][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:02:11.714][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:02:11.715][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:11.716][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:11.717][ef$get] Asked field names are: mass.
biodb.TRACE[2025-06-28 16:02:11.718][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:11.719][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:11.720][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:11.721][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-06-28 16:02:11.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:11.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:11.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:11.725][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:11.726][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:11.726][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:11.727][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:11.728][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:11.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:11.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:11.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:11.732][ef$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:02:11.733][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:02:11.734][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:11.735][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:11.736][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:02:11.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:02:11.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:11.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:11.740][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-06-28 16:02:11.741][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:02:11.742][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:11.743][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:11.744][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-06-28 16:02:11.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:02:11.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:11.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:11.748][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:02:11.749][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:02:11.750][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:11.751][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:11.752][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:02:11.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:02:11.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:11.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:11.756][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:11.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:11.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:11.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:11.759][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:11.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:11.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:11.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:11.763][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:11.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:11.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:11.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:11.767][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:11.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:11.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:11.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:11.770][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:11.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:11.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:11.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:11.774][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:11.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:11.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:11.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:11.778][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:11.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:11.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:11.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:11.789][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:11.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:11.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:11.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:11.792][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:11.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:11.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:11.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:11.796][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:11.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:11.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:11.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:02:11.800][self$createEntryFromContent] Accession numbers: 197612.
biodb.TRACE[2025-06-28 16:02:11.801][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:11.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:11.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:11.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:11.804][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:11.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:11.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:11.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:11.808][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:11.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:11.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:11.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:02:11.811][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-06-28 16:02:11.813][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:02:11.814][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:02:11.814][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:02:11.819][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:02:11.819][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:02:11.820][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:02:11.821][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:02:11.822][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:11.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:11.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:11.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:11.826][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:11.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:11.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:11.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:11.829][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:02:11.830][private$selectFields]
biodb.TRACE[2025-06-28 16:02:11.831][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-06-28 16:02:11.832][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-06-28 16:02:11.833][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:02:11.834][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:11.835][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:11.835][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:11.836][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:11.837][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:11.838][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:11.839][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:11.840][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:11.841][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:02:11.842][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:02:11.842][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:11.843][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:11.844][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:11.845][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:11.846][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-06-28 16:02:11.847][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:11.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:11.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:11.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:11.850][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:11.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:11.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:11.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:11.854][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:11.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:11.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:11.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:11.858][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [7799].
biodb.DEBUG[2025-06-28 16:02:11.859][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:02:11.860][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:02:11.861][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:02:11.865][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:02:11.866][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:02:11.866][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:02:11.867][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:02:11.868][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:11.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:11.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:11.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:11.872][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:11.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:11.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:11.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:11.875][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:02:11.876][private$selectFields]
biodb.TRACE[2025-06-28 16:02:11.877][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-06-28 16:02:11.878][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-06-28 16:02:11.879][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:02:11.880][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:11.881][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:11.881][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:11.882][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:11.883][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:11.884][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:11.885][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:11.886][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:11.887][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:02:11.888][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:02:11.888][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:11.889][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:11.890][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:11.891][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:11.892][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-06-28 16:02:11.893][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:11.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:11.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:11.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:11.896][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:11.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:11.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:11.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:11.900][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:11.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:11.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:11.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:11.904][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [71954].
biodb.DEBUG[2025-06-28 16:02:11.905][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:02:11.906][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:02:11.907][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:02:11.911][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:02:11.912][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:02:11.912][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:02:11.913][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:02:11.914][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:11.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:11.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:11.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:11.918][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:11.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:11.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:11.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:11.921][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:02:11.922][private$selectFields]
biodb.TRACE[2025-06-28 16:02:11.923][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-06-28 16:02:11.924][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-06-28 16:02:11.925][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:02:11.926][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:11.927][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:11.928][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:11.928][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:11.929][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:11.930][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:11.931][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:11.932][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:11.933][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:02:11.934][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:02:11.935][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:11.936][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:11.936][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:11.937][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:11.938][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-06-28 16:02:11.939][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:11.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:11.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:11.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:11.943][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:11.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:11.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:11.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:11.946][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:11.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:11.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:11.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:11.950][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [197612].
biodb.DEBUG[2025-06-28 16:02:11.951][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-06-28 16:02:11.952][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2025-06-28 16:02:11.959][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:11.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:11.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:11.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:11.963][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:11.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:11.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:11.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:11.967][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:11.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:11.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:11.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:11.970][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:11.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:11.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:11.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:11.974][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:11.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:11.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:11.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:11.977][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:11.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:11.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:11.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:11.981][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:11.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:11.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:11.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:11.985][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:11.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:11.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:11.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:11.988][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:11.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:11.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:11.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:11.992][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:11.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:11.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:11.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:11.996][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:11.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:11.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:11.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:12.000][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:12.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:12.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:12.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:02:12.057][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:02:12.058][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:02:12.059][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:02:12.063][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:02:12.064][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:02:12.065][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:02:12.065][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-06-28 16:02:12.068][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-06-28 16:02:12.070][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-06-28 16:02:12.072][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/2e865a03592d6effdf242ff63104f35a.content.
sched.DEBUG[2025-06-28 16:02:12.073][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
sched.DEBUG[2025-06-28 16:02:12.075][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-06-28 16:02:12.078][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-06-28 16:02:12.080][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/f0c73645ca32490f91d503a462d812b2.content.
sched.DEBUG[2025-06-28 16:02:12.081][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-06-28 16:02:12.083][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:02:12.084][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:02:12.085][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:02:12.089][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:02:12.089][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:02:12.090][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:02:12.091][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:02:12.092][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:12.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:12.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:12.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:12.096][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:12.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:12.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:12.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:12.099][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:12.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:12.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:12.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:02:12.103][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:02:12.104][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:02:12.104][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:02:12.108][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:02:12.109][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:02:12.110][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:02:12.111][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:02:12.112][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:12.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:12.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:12.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:12.115][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:12.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:12.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:12.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:12.119][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:12.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:12.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:12.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:02:12.123][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:02:12.123][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:02:12.124][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:02:12.128][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:02:12.129][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:02:12.130][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:02:12.131][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:02:12.132][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:12.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:12.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:12.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:12.135][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:12.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:12.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:12.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:12.139][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:12.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:12.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:12.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:02:12.142][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-06-28 16:02:12.144][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:02:12.145][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:02:12.146][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:02:12.149][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:02:12.150][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:02:12.151][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:02:12.152][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:02:12.153][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:12.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:12.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:12.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:12.157][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:12.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:12.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:12.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:12.160][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:02:12.161][private$selectFields]
biodb.TRACE[2025-06-28 16:02:12.162][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-06-28 16:02:12.163][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-06-28 16:02:12.164][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:02:12.165][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:12.166][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:12.166][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:12.167][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:12.168][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:12.169][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:12.170][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:12.171][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:12.172][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:02:12.173][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:02:12.174][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:12.174][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:12.175][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:12.176][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:12.177][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-06-28 16:02:12.178][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:12.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:12.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:12.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:12.182][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:12.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:12.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:12.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:12.185][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:12.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:12.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:12.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:12.189][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4648].
biodb.DEBUG[2025-06-28 16:02:12.190][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:02:12.191][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:02:12.192][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:02:12.196][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:02:12.197][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:02:12.198][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:02:12.199][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:02:12.211][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:12.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:12.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:12.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:12.215][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:12.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:12.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:12.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:12.238][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:02:12.239][private$selectFields]
biodb.TRACE[2025-06-28 16:02:12.240][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-06-28 16:02:12.241][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-06-28 16:02:12.242][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:02:12.243][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:12.244][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:12.245][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:12.246][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:12.247][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:12.248][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:12.249][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:12.249][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:12.250][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:02:12.260][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:02:12.261][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:12.262][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:12.263][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:12.264][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:12.265][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-06-28 16:02:12.266][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:12.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:12.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:12.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:12.269][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:12.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:12.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:12.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:12.273][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:12.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:12.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:12.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:12.281][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2025-06-28 16:02:12.282][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:02:12.283][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:02:12.284][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:02:12.288][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:02:12.288][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:02:12.289][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:02:12.290][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:02:12.291][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:12.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:12.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:12.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:12.295][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:12.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:12.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:12.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:12.298][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:02:12.299][private$selectFields]
biodb.TRACE[2025-06-28 16:02:12.300][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-06-28 16:02:12.301][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-06-28 16:02:12.302][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:02:12.303][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:12.304][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:12.304][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:12.305][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:12.306][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:12.307][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:12.308][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:12.309][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:12.310][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:02:12.311][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:02:12.311][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:12.312][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:12.313][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:12.314][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:12.315][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-06-28 16:02:12.316][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:12.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:12.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:12.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:12.320][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:12.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:12.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:12.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:12.323][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:12.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:12.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:12.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:12.327][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [62447].
biodb.DEBUG[2025-06-28 16:02:12.328][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-06-28 16:02:12.329][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-06-28 16:02:12.331][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:02:12.331][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:02:12.332][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:02:12.336][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:02:12.337][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:02:12.338][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:02:12.339][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-06-28 16:02:12.341][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.29*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-06-28 16:02:12.343][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
sched.DEBUG[2025-06-28 16:02:12.344][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-06-28 16:02:12.345][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-06-28 16:02:12.347][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.29%2A&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL".
sched.TRACE[2025-06-28 16:02:12.691][try_get_rcurl_content] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.29%2A&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL).
fscache.INFO [2025-06-28 16:02:13.072][private$cache$saveContents] Save 1 contents to /home/biocbuild/.cache/R/sched.
fscache.INFO [2025-06-28 16:02:13.078][private$cache$saveContents] Save 1 contents to /home/biocbuild/.cache/R/sched.
sched.DEBUG[2025-06-28 16:02:13.080][self$getBiodb()$getRequestScheduler( ...] Retrieved content saved to cache.
biodb.DEBUG[2025-06-28 16:02:13.085][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:02:13.087][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:02:13.089][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:02:13.099][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:02:13.101][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:02:13.103][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:02:13.105][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:02:13.108][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:13.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:13.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:13.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:13.116][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:13.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:13.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:13.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:13.124][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:13.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:13.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:13.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:02:13.130][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:02:13.131][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:02:13.133][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:02:13.139][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:02:13.140][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:02:13.141][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:02:13.142][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-28 16:02:13.144][private$loadEntries] Creating entries from ids [1]: "91601".
biodb.DEBUG[2025-06-28 16:02:13.145][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-06-28 16:02:13.147][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
biodb.DEBUG[2025-06-28 16:02:13.148][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-06-28 16:02:13.149][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-06-28 16:02:13.150][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-06-28 16:02:13.151][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-06-28 16:02:13.154][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:02:13.155][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:02:13.156][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:02:13.160][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:02:13.161][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:02:13.162][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:02:13.163][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-06-28 16:02:13.164][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=91601".
fscache.INFO [2025-06-28 16:02:13.166][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
sched.DEBUG[2025-06-28 16:02:13.167][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-06-28 16:02:13.168][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-06-28 16:02:13.169][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=91601".
sched.TRACE[2025-06-28 16:02:13.513][try_get_rcurl_content] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=91601).
fscache.INFO [2025-06-28 16:02:13.858][private$cache$saveContents] Save 1 contents to /home/biocbuild/.cache/R/sched.
fscache.INFO [2025-06-28 16:02:13.863][private$cache$saveContents] Save 1 contents to /home/biocbuild/.cache/R/sched.
sched.DEBUG[2025-06-28 16:02:13.865][scheduler$sendRequest] Retrieved content saved to cache.
fscache.INFO [2025-06-28 16:02:13.868][cch$saveContents] Save 1 contents to /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
biodb.DEBUG[2025-06-28 16:02:13.871][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-06-28 16:02:13.873][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-06-28 16:02:13.876][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-06-28 16:02:13.879][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:02:13.881][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:02:13.883][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:02:13.893][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:02:13.895][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:02:13.897][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:02:13.899][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:02:13.903][ef$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:13.905][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:13.907][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:13.908][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:13.910][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:13.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:13.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:13.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:13.917][ef$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:02:13.918][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:02:13.920][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:13.921][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:13.922][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:02:13.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:02:13.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:13.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:13.928][ef$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:02:13.929][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:02:13.930][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:13.931][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:13.933][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:02:13.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:02:13.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:13.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:13.938][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:02:13.939][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:02:13.940][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:13.941][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:13.942][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:02:13.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:02:13.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:13.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:13.946][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:02:13.947][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:02:13.948][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:13.949][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:13.950][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:02:13.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:02:13.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:13.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:13.954][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:02:13.955][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:02:13.956][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:13.957][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:13.958][ef$get] Asked field names are: mass.
biodb.TRACE[2025-06-28 16:02:13.959][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:13.960][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:13.960][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:13.962][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-06-28 16:02:13.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:13.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:13.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:13.965][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:13.966][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:13.967][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:13.968][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:13.969][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:13.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:13.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:13.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:13.973][ef$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:02:13.974][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:02:13.975][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:13.976][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:13.977][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:02:13.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:02:13.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:13.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:13.981][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-06-28 16:02:13.982][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:02:13.983][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:13.984][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:13.985][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-06-28 16:02:13.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:02:13.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:13.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:13.989][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:02:13.990][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:02:13.991][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:13.992][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:13.993][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:02:13.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:02:13.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:13.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:13.997][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:13.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:13.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:13.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:14.000][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:14.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:14.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:14.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:14.004][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:14.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:14.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:14.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:14.008][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:14.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:14.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:14.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:14.011][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:14.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:14.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:14.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:14.015][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:14.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:14.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:14.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:14.019][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:14.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:14.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:14.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:14.032][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:14.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:14.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:14.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:14.036][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:14.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:14.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:14.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:14.040][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:14.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:14.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:14.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:02:14.043][self$createEntryFromContent] Accession numbers: 91601.
biodb.TRACE[2025-06-28 16:02:14.044][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:14.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:14.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:14.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:14.048][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:14.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:14.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:14.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:14.051][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:14.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:14.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:14.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:02:14.055][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:02:14.056][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:02:14.056][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:02:14.061][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:02:14.061][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:02:14.062][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:02:14.063][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-28 16:02:14.064][private$loadEntries] Creating entries from ids [1]: "95147".
biodb.DEBUG[2025-06-28 16:02:14.065][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-06-28 16:02:14.066][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
biodb.DEBUG[2025-06-28 16:02:14.067][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-06-28 16:02:14.068][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-06-28 16:02:14.069][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-06-28 16:02:14.070][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-06-28 16:02:14.072][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:02:14.073][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:02:14.074][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:02:14.078][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:02:14.079][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:02:14.079][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:02:14.080][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-06-28 16:02:14.081][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=95147".
fscache.INFO [2025-06-28 16:02:14.083][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
sched.DEBUG[2025-06-28 16:02:14.084][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-06-28 16:02:14.085][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-06-28 16:02:14.086][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=95147".
sched.TRACE[2025-06-28 16:02:14.430][try_get_rcurl_content] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=95147).
fscache.INFO [2025-06-28 16:02:14.775][private$cache$saveContents] Save 1 contents to /home/biocbuild/.cache/R/sched.
fscache.INFO [2025-06-28 16:02:14.780][private$cache$saveContents] Save 1 contents to /home/biocbuild/.cache/R/sched.
sched.DEBUG[2025-06-28 16:02:14.782][scheduler$sendRequest] Retrieved content saved to cache.
fscache.INFO [2025-06-28 16:02:14.785][cch$saveContents] Save 1 contents to /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
biodb.DEBUG[2025-06-28 16:02:14.788][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-06-28 16:02:14.790][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-06-28 16:02:14.793][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-06-28 16:02:14.796][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:02:14.798][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:02:14.800][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:02:14.810][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:02:14.812][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:02:14.813][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:02:14.815][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:02:14.819][ef$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:14.821][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:14.823][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:14.824][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:14.826][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:14.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:14.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:14.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:14.832][ef$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:02:14.834][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:02:14.835][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:14.836][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:14.838][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:02:14.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:02:14.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:14.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:14.843][ef$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:02:14.844][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:02:14.845][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:14.846][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:14.848][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:02:14.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:02:14.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:14.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:14.852][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:02:14.853][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:02:14.854][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:14.855][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:14.856][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:02:14.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:02:14.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:14.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:14.860][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:02:14.861][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:02:14.862][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:14.863][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:14.864][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:02:14.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:02:14.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:14.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:14.868][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:02:14.869][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:02:14.870][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:14.870][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:14.872][ef$get] Asked field names are: mass.
biodb.TRACE[2025-06-28 16:02:14.873][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:14.873][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:14.874][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:14.875][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-06-28 16:02:14.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:14.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:14.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:14.879][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:14.880][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:14.881][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:14.882][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:14.883][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:14.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:14.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:14.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:14.886][ef$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:02:14.887][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:02:14.888][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:14.889][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:14.890][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:02:14.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:02:14.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:14.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:14.894][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-06-28 16:02:14.895][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:02:14.896][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:14.897][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:14.898][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-06-28 16:02:14.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:02:14.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:14.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:14.901][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:02:14.902][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:02:14.903][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:14.904][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:14.905][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:02:14.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:02:14.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:14.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:14.909][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:14.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:14.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:14.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:14.912][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:14.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:14.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:14.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:14.916][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:14.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:14.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:14.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:14.920][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:14.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:14.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:14.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:14.923][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:14.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:14.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:14.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:14.927][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:14.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:14.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:14.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:14.931][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:14.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:14.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:14.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:14.934][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:14.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:14.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:14.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:14.938][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:14.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:14.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:14.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:14.942][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:14.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:14.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:14.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:02:14.945][self$createEntryFromContent] Accession numbers: 95147.
biodb.TRACE[2025-06-28 16:02:14.946][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:14.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:14.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:14.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:14.950][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:14.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:14.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:14.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:14.953][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:14.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:14.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:14.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:02:14.957][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-06-28 16:02:14.958][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:02:14.959][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:02:14.960][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:02:14.965][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:02:14.965][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:02:14.966][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:02:14.967][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:02:14.968][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:14.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:14.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:14.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:14.972][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:14.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:14.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:14.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:14.976][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:02:14.977][private$selectFields]
biodb.TRACE[2025-06-28 16:02:14.978][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-06-28 16:02:14.979][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-06-28 16:02:14.979][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:02:14.980][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:14.981][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:14.982][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:14.983][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:14.984][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:14.985][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:14.986][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:14.987][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:14.987][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:02:14.988][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:02:14.989][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:14.990][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:14.991][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:14.992][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:14.993][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-06-28 16:02:14.994][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:14.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:14.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:14.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:14.997][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:14.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:14.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:15.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:15.001][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:15.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:15.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:15.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:15.005][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2025-06-28 16:02:15.006][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:02:15.014][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:02:15.014][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:02:15.018][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:02:15.019][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:02:15.020][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:02:15.021][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:02:15.022][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:15.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:15.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:15.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:15.025][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:15.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:15.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:15.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:15.029][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:02:15.030][private$selectFields]
biodb.TRACE[2025-06-28 16:02:15.031][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-06-28 16:02:15.031][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-06-28 16:02:15.032][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:02:15.033][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:15.034][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:15.035][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:15.036][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:15.037][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:15.038][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:15.038][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:15.039][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:15.040][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:02:15.041][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:02:15.042][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:15.043][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:15.044][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:15.044][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:15.045][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-06-28 16:02:15.046][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:15.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:15.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:15.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:15.050][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:15.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:15.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:15.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:15.053][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:15.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:15.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:15.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:15.057][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [91601].
biodb.DEBUG[2025-06-28 16:02:15.058][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:02:15.059][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:02:15.060][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:02:15.063][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:02:15.064][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:02:15.065][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:02:15.066][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:02:15.067][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:15.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:15.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:15.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:15.070][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:15.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:15.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:15.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:15.074][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:02:15.075][private$selectFields]
biodb.TRACE[2025-06-28 16:02:15.076][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-06-28 16:02:15.076][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-06-28 16:02:15.077][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:02:15.078][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:15.079][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:15.080][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:15.081][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:15.082][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:15.083][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:15.083][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:15.084][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:15.085][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:02:15.086][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:02:15.087][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:15.088][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:15.089][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:15.090][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:15.090][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-06-28 16:02:15.091][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:15.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:15.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:15.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:15.095][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:15.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:15.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:15.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:15.098][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:15.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:15.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:15.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:15.102][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [95147].
biodb.DEBUG[2025-06-28 16:02:15.103][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-06-28 16:02:15.104][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-06-28 16:02:15.106][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:02:15.106][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:02:15.107][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:02:15.111][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:02:15.112][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:02:15.113][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:02:15.114][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-06-28 16:02:15.116][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.17*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-06-28 16:02:15.118][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
sched.DEBUG[2025-06-28 16:02:15.119][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-06-28 16:02:15.120][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-06-28 16:02:15.122][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.17%2A&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL".
sched.TRACE[2025-06-28 16:02:15.465][try_get_rcurl_content] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.17%2A&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL).
fscache.INFO [2025-06-28 16:02:15.818][private$cache$saveContents] Save 1 contents to /home/biocbuild/.cache/R/sched.
fscache.INFO [2025-06-28 16:02:15.824][private$cache$saveContents] Save 1 contents to /home/biocbuild/.cache/R/sched.
sched.DEBUG[2025-06-28 16:02:15.827][self$getBiodb()$getRequestScheduler( ...] Retrieved content saved to cache.
biodb.DEBUG[2025-06-28 16:02:15.833][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:02:15.835][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:02:15.837][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:02:15.846][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:02:15.848][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:02:15.850][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:02:15.852][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-28 16:02:15.855][private$loadEntries] Creating entries from ids [1]: "636".
biodb.DEBUG[2025-06-28 16:02:15.857][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-06-28 16:02:15.860][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
biodb.DEBUG[2025-06-28 16:02:15.862][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-06-28 16:02:15.864][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-06-28 16:02:15.866][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-06-28 16:02:15.867][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-06-28 16:02:15.872][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:02:15.873][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:02:15.874][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:02:15.881][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:02:15.882][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:02:15.883][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:02:15.884][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-06-28 16:02:15.886][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=636".
fscache.INFO [2025-06-28 16:02:15.888][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
sched.DEBUG[2025-06-28 16:02:15.889][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-06-28 16:02:15.890][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-06-28 16:02:15.892][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=636".
sched.TRACE[2025-06-28 16:02:16.234][try_get_rcurl_content] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=636).
fscache.INFO [2025-06-28 16:02:16.580][private$cache$saveContents] Save 1 contents to /home/biocbuild/.cache/R/sched.
fscache.INFO [2025-06-28 16:02:16.583][private$cache$saveContents] Save 1 contents to /home/biocbuild/.cache/R/sched.
sched.DEBUG[2025-06-28 16:02:16.584][scheduler$sendRequest] Retrieved content saved to cache.
fscache.INFO [2025-06-28 16:02:16.586][cch$saveContents] Save 1 contents to /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
biodb.DEBUG[2025-06-28 16:02:16.587][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-06-28 16:02:16.588][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-06-28 16:02:16.589][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-06-28 16:02:16.591][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:02:16.592][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:02:16.593][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:02:16.598][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:02:16.599][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:02:16.600][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:02:16.601][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:02:16.604][ef$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:16.605][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:16.606][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:16.607][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:16.608][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:16.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:16.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:16.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:16.612][ef$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:02:16.613][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:02:16.614][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:16.615][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:16.617][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:02:16.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:02:16.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:16.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:16.621][ef$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:02:16.622][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:02:16.623][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:16.624][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:16.625][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:02:16.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:02:16.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:16.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:16.629][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:02:16.631][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:02:16.632][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:16.632][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:16.634][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:02:16.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:02:16.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:16.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:16.638][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:02:16.639][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:02:16.640][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:16.641][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:16.642][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:02:16.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:02:16.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:16.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:16.646][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:02:16.647][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:02:16.647][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:16.648][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:16.649][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:02:16.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:02:16.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:16.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:16.653][ef$get] Asked field names are: mass.
biodb.TRACE[2025-06-28 16:02:16.654][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:16.655][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:16.656][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:16.657][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-06-28 16:02:16.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:16.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:16.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:16.661][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:16.662][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:16.663][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:16.664][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:16.665][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:16.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:16.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:16.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:16.669][ef$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:02:16.670][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:02:16.671][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:16.672][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:16.673][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:02:16.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:02:16.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:16.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:16.677][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-06-28 16:02:16.678][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:02:16.679][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:16.681][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:16.683][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-06-28 16:02:16.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:02:16.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:16.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:16.686][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:02:16.687][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:02:16.688][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:16.689][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:16.690][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:02:16.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:02:16.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:16.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:16.705][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:16.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:16.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:16.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:16.709][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:16.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:16.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:16.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:16.712][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:16.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:16.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:16.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:16.716][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:16.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:16.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:16.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:16.719][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:16.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:16.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:16.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:16.723][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:16.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:16.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:16.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:16.727][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:16.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:16.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:16.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:16.730][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:16.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:16.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:16.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:16.734][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:16.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:16.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:16.737][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:16.738][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:16.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:16.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:16.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:02:16.741][self$createEntryFromContent] Accession numbers: 636.
biodb.TRACE[2025-06-28 16:02:16.742][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:16.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:16.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:16.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:16.746][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:16.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:16.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:16.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:16.750][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:16.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:16.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:16.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:02:16.753][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:02:16.754][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:02:16.755][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:02:16.759][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:02:16.760][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:02:16.761][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:02:16.762][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-28 16:02:16.763][private$loadEntries] Creating entries from ids [1]: "64199".
biodb.DEBUG[2025-06-28 16:02:16.764][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-06-28 16:02:16.765][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
biodb.DEBUG[2025-06-28 16:02:16.766][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-06-28 16:02:16.767][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-06-28 16:02:16.768][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-06-28 16:02:16.769][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-06-28 16:02:16.771][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:02:16.772][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:02:16.773][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:02:16.777][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:02:16.778][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:02:16.778][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:02:16.779][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-06-28 16:02:16.780][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=64199".
fscache.INFO [2025-06-28 16:02:16.782][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
sched.DEBUG[2025-06-28 16:02:16.783][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-06-28 16:02:16.784][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-06-28 16:02:16.785][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=64199".
sched.TRACE[2025-06-28 16:02:17.124][try_get_rcurl_content] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=64199).
fscache.INFO [2025-06-28 16:02:17.476][private$cache$saveContents] Save 1 contents to /home/biocbuild/.cache/R/sched.
fscache.INFO [2025-06-28 16:02:17.479][private$cache$saveContents] Save 1 contents to /home/biocbuild/.cache/R/sched.
sched.DEBUG[2025-06-28 16:02:17.480][scheduler$sendRequest] Retrieved content saved to cache.
fscache.INFO [2025-06-28 16:02:17.482][cch$saveContents] Save 1 contents to /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
biodb.DEBUG[2025-06-28 16:02:17.483][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-06-28 16:02:17.484][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-06-28 16:02:17.485][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-06-28 16:02:17.487][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:02:17.488][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:02:17.489][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:02:17.494][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:02:17.495][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:02:17.496][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:02:17.497][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:02:17.499][ef$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:17.500][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:17.501][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:17.502][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:17.503][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:17.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:17.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:17.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:17.507][ef$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:02:17.509][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:02:17.509][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:17.510][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:17.512][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:02:17.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:02:17.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:17.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:17.516][ef$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:02:17.517][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:02:17.518][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:17.519][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:17.520][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:02:17.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:02:17.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:17.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:17.525][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:02:17.526][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:02:17.527][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:17.528][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:17.529][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:02:17.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:02:17.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:17.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:17.533][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:02:17.534][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:02:17.535][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:17.536][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:17.537][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:02:17.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:02:17.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:17.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:17.541][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:02:17.542][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:02:17.543][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:17.544][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:17.545][ef$get] Asked field names are: mass.
biodb.TRACE[2025-06-28 16:02:17.546][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:17.547][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:17.548][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:17.549][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-06-28 16:02:17.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:17.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:17.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:17.553][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:17.554][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:17.555][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:17.556][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:17.557][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:17.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:17.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:17.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:17.561][ef$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:02:17.562][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:02:17.563][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:17.564][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:17.565][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:02:17.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:02:17.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:17.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:17.569][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-06-28 16:02:17.570][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:02:17.571][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:17.572][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:17.573][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-06-28 16:02:17.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:02:17.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:17.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:17.577][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:02:17.578][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:02:17.579][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:17.580][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:17.581][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:02:17.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:02:17.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:17.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:17.585][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:17.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:17.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:17.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:17.589][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:17.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:17.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:17.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:17.593][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:17.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:17.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:17.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:17.597][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:17.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:17.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:17.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:17.601][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:17.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:17.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:17.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:17.605][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:17.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:17.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:17.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:17.608][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:17.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:17.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:17.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:17.612][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:17.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:17.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:17.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:17.616][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:17.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:17.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:17.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:17.620][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:17.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:17.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:17.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:02:17.623][self$createEntryFromContent] Accession numbers: 64199.
biodb.TRACE[2025-06-28 16:02:17.624][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:17.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:17.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:17.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:17.628][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:17.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:17.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:17.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:17.632][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:17.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:17.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:17.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:02:17.636][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:02:17.637][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:02:17.638][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:02:17.643][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:02:17.644][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:02:17.645][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:02:17.646][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-28 16:02:17.647][private$loadEntries] Creating entries from ids [1]: "65648".
biodb.DEBUG[2025-06-28 16:02:17.648][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-06-28 16:02:17.649][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
biodb.DEBUG[2025-06-28 16:02:17.650][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-06-28 16:02:17.651][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-06-28 16:02:17.652][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-06-28 16:02:17.653][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-06-28 16:02:17.656][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:02:17.657][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:02:17.657][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:02:17.669][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:02:17.670][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:02:17.671][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:02:17.672][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-06-28 16:02:17.673][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=65648".
fscache.INFO [2025-06-28 16:02:17.675][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
sched.DEBUG[2025-06-28 16:02:17.676][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-06-28 16:02:17.677][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-06-28 16:02:17.678][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=65648".
sched.TRACE[2025-06-28 16:02:18.031][try_get_rcurl_content] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=65648).
fscache.INFO [2025-06-28 16:02:18.378][private$cache$saveContents] Save 1 contents to /home/biocbuild/.cache/R/sched.
fscache.INFO [2025-06-28 16:02:18.383][private$cache$saveContents] Save 1 contents to /home/biocbuild/.cache/R/sched.
sched.DEBUG[2025-06-28 16:02:18.386][scheduler$sendRequest] Retrieved content saved to cache.
fscache.INFO [2025-06-28 16:02:18.389][cch$saveContents] Save 1 contents to /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
biodb.DEBUG[2025-06-28 16:02:18.392][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-06-28 16:02:18.394][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-06-28 16:02:18.397][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-06-28 16:02:18.400][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:02:18.402][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:02:18.405][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:02:18.414][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:02:18.416][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:02:18.418][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:02:18.420][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:02:18.424][ef$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:18.426][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:18.428][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:18.430][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:18.432][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:18.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:18.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:18.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:18.438][ef$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:02:18.440][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:02:18.441][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:18.442][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:18.444][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:02:18.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:02:18.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:18.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:18.449][ef$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:02:18.450][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:02:18.451][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:18.452][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:18.454][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:02:18.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:02:18.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:18.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:18.458][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:02:18.459][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:02:18.460][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:18.461][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:18.463][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:02:18.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:02:18.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:18.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:18.467][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:02:18.468][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:02:18.468][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:18.469][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:18.470][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:02:18.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:02:18.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:18.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:18.474][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:02:18.475][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:02:18.476][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:18.477][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:18.478][ef$get] Asked field names are: mass.
biodb.TRACE[2025-06-28 16:02:18.479][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:18.480][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:18.481][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:18.482][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-06-28 16:02:18.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:18.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:18.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:18.485][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:18.486][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:18.487][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:18.488][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:18.489][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:18.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:18.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:18.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:18.493][ef$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:02:18.494][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:02:18.495][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:18.496][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:18.497][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:02:18.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:02:18.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:18.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:18.500][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-06-28 16:02:18.501][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:02:18.502][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:18.503][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:18.504][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-06-28 16:02:18.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:02:18.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:18.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:18.508][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:02:18.509][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:02:18.510][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:18.511][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:18.512][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:02:18.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:02:18.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:18.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:18.515][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:18.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:18.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:18.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:18.519][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:18.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:18.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:18.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:18.523][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:18.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:18.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:18.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:18.526][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:18.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:18.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:18.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:18.530][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:18.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:18.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:18.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:18.534][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:18.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:18.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:18.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:18.537][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:18.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:18.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:18.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:18.541][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:18.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:18.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:18.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:18.545][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:18.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:18.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:18.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:18.548][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:18.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:18.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:18.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:02:18.552][self$createEntryFromContent] Accession numbers: 65648.
biodb.TRACE[2025-06-28 16:02:18.553][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:18.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:18.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:18.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:18.557][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:18.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:18.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:18.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:18.560][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:18.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:18.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:18.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:02:18.564][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-06-28 16:02:18.566][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:02:18.566][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:02:18.567][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:02:18.572][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:02:18.572][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:02:18.573][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:02:18.574][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:02:18.575][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:18.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:18.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:18.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:18.579][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:18.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:18.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:18.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:18.582][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:02:18.583][private$selectFields]
biodb.TRACE[2025-06-28 16:02:18.584][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-06-28 16:02:18.585][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-06-28 16:02:18.586][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:02:18.587][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:18.588][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:18.589][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:18.590][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:18.590][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:18.591][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:18.592][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:18.593][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:18.594][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:02:18.595][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:02:18.596][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:18.597][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:18.598][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:18.599][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:18.599][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-06-28 16:02:18.600][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:18.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:18.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:18.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:18.604][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:18.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:18.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:18.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:18.608][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:18.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:18.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:18.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:18.612][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [636].
biodb.DEBUG[2025-06-28 16:02:18.613][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:02:18.614][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:02:18.614][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:02:18.619][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:02:18.620][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:02:18.621][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:02:18.621][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:02:18.623][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:18.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:18.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:18.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:18.626][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:18.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:18.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:18.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:18.630][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:02:18.631][private$selectFields]
biodb.TRACE[2025-06-28 16:02:18.632][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-06-28 16:02:18.633][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-06-28 16:02:18.633][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:02:18.634][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:18.635][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:18.636][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:18.637][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:18.638][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:18.639][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:18.640][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:18.641][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:18.641][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:02:18.642][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:02:18.643][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:18.644][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:18.645][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:18.646][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:18.647][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-06-28 16:02:18.648][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:18.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:18.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:18.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:18.651][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:18.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:18.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:18.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:18.655][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:18.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:18.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:18.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:18.666][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [64199].
biodb.DEBUG[2025-06-28 16:02:18.667][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:02:18.668][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:02:18.669][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:02:18.673][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:02:18.674][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:02:18.674][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:02:18.675][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:02:18.676][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:18.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:18.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:18.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:18.680][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:18.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:18.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:18.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:18.683][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:02:18.684][private$selectFields]
biodb.TRACE[2025-06-28 16:02:18.685][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-06-28 16:02:18.686][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-06-28 16:02:18.687][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:02:18.688][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:18.689][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:18.689][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:18.690][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:18.691][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:18.692][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:18.693][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:18.694][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:18.695][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:02:18.696][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:02:18.696][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:18.697][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:18.698][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:18.699][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:18.700][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-06-28 16:02:18.701][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:18.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:18.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:18.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:18.704][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:18.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:18.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:18.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:18.708][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:18.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:18.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:18.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:18.712][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [65648].
biodb.DEBUG[2025-06-28 16:02:18.713][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-06-28 16:02:18.713][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2025-06-28 16:02:18.721][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2025-06-28 16:02:18.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2025-06-28 16:02:18.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:18.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:18.724][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2025-06-28 16:02:18.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2025-06-28 16:02:18.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:18.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:18.728][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2025-06-28 16:02:18.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2025-06-28 16:02:18.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:18.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2025-06-28 16:02:18.734][biodb::testThat]
biodb.INFO [2025-06-28 16:02:18.735][biodb::testThat] Running test function test_annotateMzValues_ppm_tol (" ppm tolerance works in annotateMzValues() ").
biodb.INFO [2025-06-28 16:02:18.736][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-06-28 16:02:18.736][biodb::testThat]
biodb.TRACE[2025-06-28 16:02:18.739][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-06-28 16:02:18.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-06-28 16:02:18.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:18.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:18.743][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-06-28 16:02:18.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-06-28 16:02:18.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:18.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:18.746][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-06-28 16:02:18.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-06-28 16:02:18.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:18.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:18.750][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:18.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:18.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:18.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:18.753][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:18.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:18.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:18.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:18.757][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:18.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:18.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:18.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:18.760][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:18.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:18.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:18.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:18.764][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:18.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:18.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:18.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:18.767][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:18.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:18.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:18.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:18.771][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:18.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:18.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:18.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:18.775][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:18.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:18.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:18.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:18.778][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:18.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:18.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:18.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:18.782][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:18.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:18.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:18.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:18.786][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:18.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:18.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:18.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:18.789][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:18.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:18.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:18.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:02:18.795][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:02:18.796][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:02:18.797][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:02:18.801][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:02:18.802][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:02:18.803][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:02:18.803][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-06-28 16:02:18.806][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-06-28 16:02:18.808][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-06-28 16:02:18.810][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/8fc54eee7e982ce554bee8000d8203f7.content.
sched.DEBUG[2025-06-28 16:02:18.811][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-06-28 16:02:18.813][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:02:18.814][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:02:18.815][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:02:18.819][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:02:18.820][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:02:18.821][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:02:18.822][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:02:18.823][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:18.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:18.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:18.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:18.826][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:18.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:18.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:18.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:18.830][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:18.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:18.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:18.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
sched.DEBUG[2025-06-28 16:02:18.835][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-06-28 16:02:18.837][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-06-28 16:02:18.839][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/6def615835d7c1dfccd5a5f135bd2f9d.content.
sched.DEBUG[2025-06-28 16:02:18.840][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-06-28 16:02:18.842][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:02:18.843][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:02:18.844][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:02:18.848][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:02:18.849][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:02:18.850][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:02:18.850][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:02:18.852][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:18.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:18.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:18.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:18.855][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:18.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:18.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:18.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:18.859][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:18.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:18.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:18.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:02:18.863][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:02:18.864][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:02:18.864][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:02:18.869][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:02:18.869][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:02:18.870][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:02:18.871][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:02:18.872][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:18.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:18.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:18.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:18.876][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:18.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:18.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:18.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:18.880][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:18.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:18.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:18.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:02:18.884][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-06-28 16:02:18.886][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:02:18.886][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:02:18.887][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:02:18.891][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:02:18.892][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:02:18.893][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:02:18.894][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:02:18.895][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:18.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:18.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:18.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:18.899][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:18.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:18.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:18.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:18.902][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:02:18.903][private$selectFields]
biodb.TRACE[2025-06-28 16:02:18.904][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-06-28 16:02:18.905][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-06-28 16:02:18.906][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:02:18.907][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:18.908][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:18.908][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:18.909][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:18.910][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:18.911][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:18.912][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:18.913][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:18.914][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:02:18.915][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:02:18.916][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:18.917][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:18.917][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:18.918][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:18.919][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-06-28 16:02:18.920][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:18.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:18.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:18.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:18.928][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:18.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:18.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:18.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:18.931][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:18.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:18.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:18.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:18.935][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [192288].
biodb.DEBUG[2025-06-28 16:02:18.936][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:02:18.937][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:02:18.938][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:02:18.942][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:02:18.942][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:02:18.943][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:02:18.944][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:02:18.945][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:18.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:18.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:18.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:18.949][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:18.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:18.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:18.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:18.952][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:02:18.953][private$selectFields]
biodb.TRACE[2025-06-28 16:02:18.954][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-06-28 16:02:18.955][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-06-28 16:02:18.956][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:02:18.957][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:18.957][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:18.958][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:18.959][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:18.960][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:18.961][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:18.962][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:18.963][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:18.964][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:02:18.964][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:02:18.965][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:18.966][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:18.967][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:18.968][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:18.969][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-06-28 16:02:18.970][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:18.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:18.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:18.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:18.973][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:18.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:18.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:18.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:18.977][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:18.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:18.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:18.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:18.981][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2025-06-28 16:02:18.982][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:02:18.982][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:02:18.983][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:02:18.987][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:02:18.988][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:02:18.989][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:02:18.990][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:02:18.991][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:18.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:18.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:18.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:18.994][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:18.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:18.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:18.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:18.998][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:02:18.999][private$selectFields]
biodb.TRACE[2025-06-28 16:02:19.000][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-06-28 16:02:19.000][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-06-28 16:02:19.001][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:02:19.002][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:19.003][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:19.004][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:19.005][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:19.006][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:19.007][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:19.007][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:19.008][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:19.009][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:02:19.010][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:02:19.011][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:19.012][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:19.013][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:19.014][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:19.015][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-06-28 16:02:19.015][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:19.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:19.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:19.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:19.019][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:19.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:19.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:19.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:19.023][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:19.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:19.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:19.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:19.027][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [209892].
biodb.DEBUG[2025-06-28 16:02:19.027][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-06-28 16:02:19.028][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-06-28 16:02:19.030][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:02:19.031][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:02:19.032][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:02:19.036][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:02:19.037][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:02:19.038][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:02:19.038][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-06-28 16:02:19.041][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-06-28 16:02:19.043][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-06-28 16:02:19.045][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/013adb879cee6d4257067df9ba0a8c7b.content.
sched.DEBUG[2025-06-28 16:02:19.046][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-06-28 16:02:19.048][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:02:19.049][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:02:19.050][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:02:19.054][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:02:19.055][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:02:19.056][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:02:19.056][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:02:19.058][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:19.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:19.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:19.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:19.061][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:19.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:19.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:19.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:19.065][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:19.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:19.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:19.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:02:19.069][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:02:19.069][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:02:19.070][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:02:19.074][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:02:19.075][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:02:19.076][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:02:19.077][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:02:19.078][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:19.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:19.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:19.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:19.082][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:19.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:19.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:19.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:19.085][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:19.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:19.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:19.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
sched.DEBUG[2025-06-28 16:02:19.090][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.63*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-06-28 16:02:19.092][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-06-28 16:02:19.095][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/d37a10a1f6afae785eb4d1943c254641.content.
sched.DEBUG[2025-06-28 16:02:19.096][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-06-28 16:02:19.099][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:02:19.099][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:02:19.100][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:02:19.104][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:02:19.105][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:02:19.106][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:02:19.107][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:02:19.108][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:19.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:19.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:19.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:19.112][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:19.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:19.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:19.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:19.115][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:19.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:19.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:19.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:02:19.119][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:02:19.120][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:02:19.121][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:02:19.125][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:02:19.126][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:02:19.127][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:02:19.128][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:02:19.129][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:19.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:19.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:19.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:19.132][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:19.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:19.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:19.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:19.136][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:19.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:19.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:19.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:02:19.140][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:02:19.141][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:02:19.142][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:02:19.146][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:02:19.147][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:02:19.148][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:02:19.149][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:02:19.150][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:19.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:19.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:19.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:19.153][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:19.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:19.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:19.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:19.157][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:19.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:19.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:19.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:02:19.161][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-06-28 16:02:19.162][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:02:19.163][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:02:19.164][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:02:19.168][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:02:19.169][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:02:19.170][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:02:19.171][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:02:19.172][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:19.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:19.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:19.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:19.176][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:19.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:19.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:19.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:19.179][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:02:19.180][private$selectFields]
biodb.TRACE[2025-06-28 16:02:19.186][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-06-28 16:02:19.186][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-06-28 16:02:19.187][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:02:19.188][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:19.189][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:19.190][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:19.191][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:19.192][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:19.193][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:19.194][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:19.195][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:19.195][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:02:19.196][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:02:19.197][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:19.198][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:19.199][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:19.200][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:19.201][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-06-28 16:02:19.202][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:19.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:19.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:19.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:19.205][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:19.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:19.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:19.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:19.209][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:19.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:19.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:19.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:19.213][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2025-06-28 16:02:19.214][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:02:19.215][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:02:19.215][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:02:19.219][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:02:19.220][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:02:19.221][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:02:19.222][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:02:19.223][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:19.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:19.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:19.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:19.226][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:19.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:19.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:19.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:19.230][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:02:19.231][private$selectFields]
biodb.TRACE[2025-06-28 16:02:19.232][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-06-28 16:02:19.233][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-06-28 16:02:19.233][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:02:19.234][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:19.235][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:19.236][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:19.237][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:19.238][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:19.239][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:19.240][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:19.240][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:19.241][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:02:19.242][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:02:19.243][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:19.244][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:19.245][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:19.246][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:19.246][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-06-28 16:02:19.247][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:19.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:19.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:19.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:19.251][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:19.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:19.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:19.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:19.254][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:19.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:19.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:19.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:19.258][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [16587].
biodb.DEBUG[2025-06-28 16:02:19.259][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:02:19.260][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:02:19.261][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:02:19.265][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:02:19.266][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:02:19.266][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:02:19.267][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:02:19.268][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:19.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:19.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:19.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:19.272][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:19.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:19.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:19.275][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:19.275][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:02:19.276][private$selectFields]
biodb.TRACE[2025-06-28 16:02:19.277][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-06-28 16:02:19.278][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-06-28 16:02:19.279][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:02:19.280][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:19.281][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:19.281][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:19.282][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:19.283][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:19.284][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:19.285][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:19.286][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:19.287][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:02:19.288][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:02:19.288][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:19.289][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:19.290][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:19.291][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:19.292][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-06-28 16:02:19.293][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:19.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:19.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:19.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:19.296][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:19.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:19.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:19.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:19.300][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:19.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:19.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:19.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:19.304][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [19804].
biodb.DEBUG[2025-06-28 16:02:19.305][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-06-28 16:02:19.306][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-06-28 16:02:19.308][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:02:19.308][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:02:19.309][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:02:19.313][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:02:19.314][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:02:19.315][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:02:19.316][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-06-28 16:02:19.318][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-06-28 16:02:19.320][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-06-28 16:02:19.322][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/e0540b0a9d3ba75ce1522ce23f76319e.content.
sched.DEBUG[2025-06-28 16:02:19.323][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-06-28 16:02:19.325][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:02:19.326][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:02:19.327][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:02:19.331][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:02:19.332][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:02:19.332][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:02:19.333][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:02:19.334][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:19.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:19.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:19.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:19.338][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:19.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:19.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:19.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:19.342][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:19.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:19.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:19.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:02:19.345][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:02:19.346][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:02:19.347][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:02:19.351][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:02:19.352][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:02:19.352][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:02:19.353][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:02:19.354][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:19.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:19.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:19.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:19.358][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:19.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:19.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:19.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:19.362][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:19.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:19.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:19.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:02:19.366][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:02:19.367][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:02:19.368][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:02:19.372][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:02:19.372][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:02:19.373][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:02:19.374][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:02:19.375][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:19.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:19.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:19.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:19.379][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:19.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:19.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:19.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:19.382][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:19.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:19.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:19.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
sched.DEBUG[2025-06-28 16:02:19.387][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.4*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-06-28 16:02:19.389][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
sched.DEBUG[2025-06-28 16:02:19.390][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-06-28 16:02:19.391][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-06-28 16:02:19.392][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.4%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
sched.TRACE[2025-06-28 16:02:19.741][try_get_rcurl_content] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.4%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
fscache.INFO [2025-06-28 16:02:20.252][private$cache$saveContents] Save 1 contents to /home/biocbuild/.cache/R/sched.
fscache.INFO [2025-06-28 16:02:20.255][private$cache$saveContents] Save 1 contents to /home/biocbuild/.cache/R/sched.
sched.DEBUG[2025-06-28 16:02:20.256][self$getBiodb()$getRequestScheduler( ...] Retrieved content saved to cache.
biodb.DEBUG[2025-06-28 16:02:20.261][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:02:20.262][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:02:20.263][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:02:20.267][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:02:20.268][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:02:20.269][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:02:20.270][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:02:20.271][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:20.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:20.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:20.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:20.274][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:20.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:20.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:20.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:20.278][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:20.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:20.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:20.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:02:20.282][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:02:20.283][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:02:20.283][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:02:20.287][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:02:20.288][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:02:20.289][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:02:20.290][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-28 16:02:20.291][private$loadEntries] Creating entries from ids [1]: "3017".
biodb.DEBUG[2025-06-28 16:02:20.292][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-06-28 16:02:20.298][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
biodb.DEBUG[2025-06-28 16:02:20.303][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-06-28 16:02:20.304][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-06-28 16:02:20.305][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-06-28 16:02:20.305][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-06-28 16:02:20.308][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:02:20.309][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:02:20.309][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:02:20.314][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:02:20.314][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:02:20.315][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:02:20.316][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-06-28 16:02:20.317][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=3017".
fscache.INFO [2025-06-28 16:02:20.319][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
sched.DEBUG[2025-06-28 16:02:20.320][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-06-28 16:02:20.321][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-06-28 16:02:20.322][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=3017".
sched.TRACE[2025-06-28 16:02:20.689][try_get_rcurl_content] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=3017).
fscache.INFO [2025-06-28 16:02:21.048][private$cache$saveContents] Save 1 contents to /home/biocbuild/.cache/R/sched.
fscache.INFO [2025-06-28 16:02:21.050][private$cache$saveContents] Save 1 contents to /home/biocbuild/.cache/R/sched.
sched.DEBUG[2025-06-28 16:02:21.051][scheduler$sendRequest] Retrieved content saved to cache.
fscache.INFO [2025-06-28 16:02:21.052][cch$saveContents] Save 1 contents to /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
biodb.DEBUG[2025-06-28 16:02:21.054][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-06-28 16:02:21.055][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-06-28 16:02:21.056][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-06-28 16:02:21.057][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:02:21.058][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:02:21.059][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:02:21.064][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:02:21.064][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:02:21.065][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:02:21.066][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:02:21.068][ef$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:21.069][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:21.070][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:21.071][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:21.072][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:21.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:21.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:21.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:21.076][ef$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:02:21.077][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:02:21.078][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:21.079][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:21.080][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:02:21.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:02:21.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:21.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:21.084][ef$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:02:21.085][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:02:21.086][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:21.087][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:21.088][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:02:21.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:02:21.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:21.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:21.092][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:02:21.093][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:02:21.094][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:21.095][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:21.096][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:02:21.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:02:21.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:21.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:21.100][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:02:21.100][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:02:21.101][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:21.102][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:21.103][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:02:21.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:02:21.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:21.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:21.107][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:02:21.108][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:02:21.109][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:21.110][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:21.111][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:02:21.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:02:21.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:21.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:21.114][ef$get] Asked field names are: mass.
biodb.TRACE[2025-06-28 16:02:21.115][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:21.116][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:21.117][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:21.118][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-06-28 16:02:21.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:21.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:21.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:21.122][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:21.123][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:21.124][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:21.124][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:21.125][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:21.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:21.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:21.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:21.129][ef$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:02:21.130][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:02:21.131][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:21.132][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:21.133][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:02:21.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:02:21.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:21.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:21.137][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-06-28 16:02:21.138][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:02:21.138][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:21.139][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:21.140][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-06-28 16:02:21.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:02:21.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:21.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:21.144][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:02:21.145][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:02:21.146][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:21.147][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:21.148][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:02:21.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:02:21.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:21.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:21.152][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:21.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:21.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:21.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:21.155][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:21.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:21.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:21.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:21.159][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:21.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:21.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:21.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:21.163][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:21.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:21.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:21.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:21.166][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:21.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:21.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:21.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:21.170][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:21.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:21.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:21.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:21.174][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:21.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:21.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:21.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:21.177][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:21.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:21.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:21.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:21.181][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:21.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:21.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:21.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:21.185][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:21.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:21.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:21.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:02:21.188][self$createEntryFromContent] Accession numbers: 3017.
biodb.TRACE[2025-06-28 16:02:21.189][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:21.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:21.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:21.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:21.193][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:21.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:21.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:21.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:21.196][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:21.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:21.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:21.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:02:21.200][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:02:21.201][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:02:21.202][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:02:21.206][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:02:21.207][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:02:21.208][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:02:21.208][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-28 16:02:21.209][private$loadEntries] Creating entries from ids [1]: "3510".
biodb.DEBUG[2025-06-28 16:02:21.210][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-06-28 16:02:21.212][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
biodb.DEBUG[2025-06-28 16:02:21.213][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-06-28 16:02:21.214][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-06-28 16:02:21.215][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-06-28 16:02:21.215][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-06-28 16:02:21.218][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:02:21.219][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:02:21.219][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:02:21.223][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:02:21.224][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:02:21.225][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:02:21.226][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-06-28 16:02:21.227][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=3510".
fscache.INFO [2025-06-28 16:02:21.229][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
sched.DEBUG[2025-06-28 16:02:21.230][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-06-28 16:02:21.231][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-06-28 16:02:21.232][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=3510".
sched.TRACE[2025-06-28 16:02:21.578][try_get_rcurl_content] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=3510).
fscache.INFO [2025-06-28 16:02:21.928][private$cache$saveContents] Save 1 contents to /home/biocbuild/.cache/R/sched.
fscache.INFO [2025-06-28 16:02:21.930][private$cache$saveContents] Save 1 contents to /home/biocbuild/.cache/R/sched.
sched.DEBUG[2025-06-28 16:02:21.931][scheduler$sendRequest] Retrieved content saved to cache.
fscache.INFO [2025-06-28 16:02:21.933][cch$saveContents] Save 1 contents to /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
biodb.DEBUG[2025-06-28 16:02:21.934][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-06-28 16:02:21.935][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-06-28 16:02:21.936][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-06-28 16:02:21.938][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:02:21.939][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:02:21.940][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:02:21.945][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:02:21.945][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:02:21.946][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:02:21.947][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:02:21.949][ef$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:21.950][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:21.951][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:21.952][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:21.954][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:21.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:21.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:21.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:21.958][ef$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:02:21.959][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:02:21.960][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:21.960][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:21.962][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:02:21.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:02:21.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:21.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:21.966][ef$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:02:21.967][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:02:21.968][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:21.969][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:21.970][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:02:21.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:02:21.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:21.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:21.974][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:02:21.975][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:02:21.976][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:21.986][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:21.988][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:02:21.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:02:21.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:21.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:21.992][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:02:21.993][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:02:21.994][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:21.995][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:21.996][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:02:21.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:02:21.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:21.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:22.000][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:02:22.001][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:02:22.001][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:22.002][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:22.003][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:02:22.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:02:22.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:22.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:22.007][ef$get] Asked field names are: mass.
biodb.TRACE[2025-06-28 16:02:22.008][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:22.009][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:22.010][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:22.011][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-06-28 16:02:22.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:22.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:22.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:22.014][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:22.015][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:22.016][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:22.017][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:22.018][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:22.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:22.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:22.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:22.022][ef$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:02:22.023][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:02:22.024][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:22.024][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:22.026][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:02:22.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:02:22.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:22.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:22.029][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-06-28 16:02:22.030][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:02:22.031][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:22.032][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:22.033][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-06-28 16:02:22.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:02:22.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:22.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:22.037][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:02:22.038][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:02:22.038][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:22.039][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:22.040][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:02:22.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:02:22.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:22.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:22.044][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:22.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:22.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:22.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:22.048][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:22.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:22.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:22.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:22.051][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:22.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:22.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:22.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:22.055][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:22.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:22.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:22.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:22.058][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:22.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:22.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:22.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:22.062][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:22.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:22.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:22.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:22.065][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:22.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:22.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:22.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:22.069][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:22.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:22.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:22.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:22.073][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:22.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:22.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:22.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:22.076][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:22.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:22.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:22.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:02:22.080][self$createEntryFromContent] Accession numbers: 3510.
biodb.TRACE[2025-06-28 16:02:22.081][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:22.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:22.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:22.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:22.084][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:22.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:22.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:22.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:22.088][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:22.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:22.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:22.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:02:22.091][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:02:22.092][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:02:22.093][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:02:22.097][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:02:22.098][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:02:22.099][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:02:22.099][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-28 16:02:22.100][private$loadEntries] Creating entries from ids [1]: "7554".
biodb.DEBUG[2025-06-28 16:02:22.101][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-06-28 16:02:22.103][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
biodb.DEBUG[2025-06-28 16:02:22.104][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-06-28 16:02:22.105][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-06-28 16:02:22.106][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-06-28 16:02:22.106][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-06-28 16:02:22.109][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:02:22.110][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:02:22.110][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:02:22.114][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:02:22.115][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:02:22.116][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:02:22.117][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-06-28 16:02:22.118][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7554".
fscache.INFO [2025-06-28 16:02:22.120][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
sched.DEBUG[2025-06-28 16:02:22.121][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-06-28 16:02:22.122][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-06-28 16:02:22.123][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7554".
sched.TRACE[2025-06-28 16:02:22.460][try_get_rcurl_content] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7554).
fscache.INFO [2025-06-28 16:02:22.807][private$cache$saveContents] Save 1 contents to /home/biocbuild/.cache/R/sched.
fscache.INFO [2025-06-28 16:02:22.811][private$cache$saveContents] Save 1 contents to /home/biocbuild/.cache/R/sched.
sched.DEBUG[2025-06-28 16:02:22.814][scheduler$sendRequest] Retrieved content saved to cache.
fscache.INFO [2025-06-28 16:02:22.817][cch$saveContents] Save 1 contents to /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
biodb.DEBUG[2025-06-28 16:02:22.820][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-06-28 16:02:22.822][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-06-28 16:02:22.825][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-06-28 16:02:22.828][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:02:22.830][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:02:22.832][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:02:22.842][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:02:22.844][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:02:22.846][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:02:22.847][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:02:22.851][ef$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:22.853][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:22.855][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:22.857][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:22.858][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:22.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:22.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:22.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:22.865][ef$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:02:22.866][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:02:22.867][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:22.869][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:22.870][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:02:22.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:02:22.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:22.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:22.875][ef$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:02:22.877][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:02:22.878][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:22.879][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:22.880][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:02:22.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:02:22.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:22.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:22.885][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:02:22.886][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:02:22.887][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:22.888][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:22.889][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:02:22.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:02:22.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:22.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:22.893][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:02:22.894][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:02:22.895][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:22.896][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:22.897][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:02:22.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:02:22.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:22.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:22.901][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:02:22.902][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:02:22.903][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:22.903][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:22.905][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:02:22.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:02:22.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:22.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:22.908][ef$get] Asked field names are: mass.
biodb.TRACE[2025-06-28 16:02:22.909][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:22.910][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:22.911][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:22.912][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-06-28 16:02:22.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:22.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:22.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:22.916][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:22.917][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:22.918][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:22.919][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:22.920][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:22.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:22.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:22.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:22.924][ef$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:02:22.925][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:02:22.926][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:22.927][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:22.928][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:02:22.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:02:22.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:22.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:22.932][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-06-28 16:02:22.933][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:02:22.934][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:22.934][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:22.936][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-06-28 16:02:22.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:02:22.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:22.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:22.939][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:02:22.940][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:02:22.941][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:22.942][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:22.943][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:02:22.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:02:22.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:22.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:22.947][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:22.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:22.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:22.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:22.950][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:22.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:22.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:22.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:22.954][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:22.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:22.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:22.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:22.965][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:22.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:22.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:22.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:22.969][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:22.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:22.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:22.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:22.972][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:22.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:22.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:22.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:22.976][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:22.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:22.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:22.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:22.980][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:22.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:22.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:22.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:22.983][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:22.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:22.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:22.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:22.987][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:22.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:22.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:22.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:02:22.990][self$createEntryFromContent] Accession numbers: 7554.
biodb.TRACE[2025-06-28 16:02:22.991][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:22.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:22.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:22.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:22.995][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:22.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:22.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:22.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:22.998][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:22.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:23.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:23.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:02:23.002][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-06-28 16:02:23.003][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:02:23.004][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:02:23.005][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:02:23.009][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:02:23.010][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:02:23.011][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:02:23.011][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:02:23.013][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:23.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:23.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:23.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:23.016][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:23.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:23.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:23.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:23.020][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:02:23.021][private$selectFields]
biodb.TRACE[2025-06-28 16:02:23.021][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-06-28 16:02:23.022][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-06-28 16:02:23.023][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:02:23.024][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:23.025][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:23.026][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:23.027][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:23.027][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:23.028][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:23.029][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:23.030][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:23.031][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:02:23.032][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:02:23.033][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:23.034][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:23.035][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:23.035][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:23.036][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-06-28 16:02:23.037][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:23.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:23.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:23.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:23.041][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:23.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:23.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:23.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:23.044][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:23.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:23.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:23.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:23.048][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [7799].
biodb.DEBUG[2025-06-28 16:02:23.049][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:02:23.050][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:02:23.051][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:02:23.055][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:02:23.056][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:02:23.057][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:02:23.057][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:02:23.058][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:23.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:23.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:23.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:23.062][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:23.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:23.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:23.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:23.066][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:02:23.066][private$selectFields]
biodb.TRACE[2025-06-28 16:02:23.067][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-06-28 16:02:23.068][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-06-28 16:02:23.069][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:02:23.070][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:23.071][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:23.072][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:23.073][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:23.073][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:23.074][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:23.075][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:23.076][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:23.077][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:02:23.078][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:02:23.079][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:23.080][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:23.081][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:23.082][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:23.082][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-06-28 16:02:23.083][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:23.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:23.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:23.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:23.087][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:23.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:23.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:23.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:23.091][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:23.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:23.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:23.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:23.095][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [3017].
biodb.DEBUG[2025-06-28 16:02:23.096][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:02:23.096][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:02:23.097][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:02:23.101][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:02:23.102][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:02:23.103][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:02:23.104][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:02:23.105][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:23.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:23.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:23.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:23.109][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:23.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:23.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:23.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:23.112][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:02:23.113][private$selectFields]
biodb.TRACE[2025-06-28 16:02:23.114][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-06-28 16:02:23.115][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-06-28 16:02:23.116][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:02:23.117][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:23.118][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:23.118][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:23.119][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:23.120][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:23.121][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:23.122][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:23.123][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:23.124][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:02:23.125][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:02:23.126][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:23.127][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:23.127][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:23.128][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:23.129][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-06-28 16:02:23.130][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:23.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:23.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:23.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:23.134][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:23.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:23.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:23.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:23.137][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:23.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:23.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:23.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:23.141][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [7554].
biodb.DEBUG[2025-06-28 16:02:23.142][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-06-28 16:02:23.143][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2025-06-28 16:02:23.151][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:23.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:23.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:23.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:23.154][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:23.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:23.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:23.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:23.158][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:23.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:23.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:23.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:23.162][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:23.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:23.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:23.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:23.165][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:23.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:23.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:23.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:23.169][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:23.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:23.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:23.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:23.173][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:23.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:23.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:23.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:23.177][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:23.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:23.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:23.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:23.181][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:23.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:23.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:23.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:23.185][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:23.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:23.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:23.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:23.188][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:23.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:23.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:23.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:23.192][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:23.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:23.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:23.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:02:23.198][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:02:23.199][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:02:23.199][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:02:23.204][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:02:23.204][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:02:23.205][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:02:23.206][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-06-28 16:02:23.209][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-06-28 16:02:23.211][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-06-28 16:02:23.213][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/2e865a03592d6effdf242ff63104f35a.content.
sched.DEBUG[2025-06-28 16:02:23.214][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
sched.DEBUG[2025-06-28 16:02:23.220][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-06-28 16:02:23.223][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-06-28 16:02:23.225][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/f0c73645ca32490f91d503a462d812b2.content.
sched.DEBUG[2025-06-28 16:02:23.226][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-06-28 16:02:23.228][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:02:23.229][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:02:23.230][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:02:23.234][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:02:23.235][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:02:23.236][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:02:23.237][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:02:23.238][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:23.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:23.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:23.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:23.241][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:23.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:23.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:23.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:23.245][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:23.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:23.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:23.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:02:23.249][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:02:23.249][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:02:23.250][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:02:23.254][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:02:23.255][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:02:23.256][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:02:23.257][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:02:23.258][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:23.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:23.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:23.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:23.262][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:23.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:23.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:23.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:23.265][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:23.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:23.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:23.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:02:23.269][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:02:23.270][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:02:23.271][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:02:23.274][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:02:23.275][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:02:23.276][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:02:23.277][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:02:23.278][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:23.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:23.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:23.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:23.281][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:23.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:23.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:23.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:23.285][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:23.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:23.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:23.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:02:23.289][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-06-28 16:02:23.290][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:02:23.291][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:02:23.292][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:02:23.295][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:02:23.296][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:02:23.297][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:02:23.298][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:02:23.299][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:23.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:23.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:23.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:23.303][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:23.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:23.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:23.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:23.306][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:02:23.307][private$selectFields]
biodb.TRACE[2025-06-28 16:02:23.308][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-06-28 16:02:23.309][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-06-28 16:02:23.309][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:02:23.310][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:23.311][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:23.312][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:23.313][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:23.314][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:23.315][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:23.316][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:23.317][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:23.317][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:02:23.318][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:02:23.319][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:23.320][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:23.321][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:23.322][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:23.323][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-06-28 16:02:23.324][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:23.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:23.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:23.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:23.327][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:23.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:23.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:23.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:23.331][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:23.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:23.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:23.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:23.335][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4648].
biodb.DEBUG[2025-06-28 16:02:23.336][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:02:23.336][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:02:23.337][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:02:23.341][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:02:23.342][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:02:23.343][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:02:23.344][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:02:23.345][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:23.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:23.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:23.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:23.348][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:23.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:23.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:23.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:23.352][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:02:23.353][private$selectFields]
biodb.TRACE[2025-06-28 16:02:23.354][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-06-28 16:02:23.354][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-06-28 16:02:23.355][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:02:23.356][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:23.357][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:23.358][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:23.359][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:23.360][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:23.361][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:23.362][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:23.362][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:23.363][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:02:23.364][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:02:23.365][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:23.366][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:23.367][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:23.368][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:23.369][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-06-28 16:02:23.370][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:23.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:23.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:23.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:23.373][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:23.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:23.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:23.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:23.377][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:23.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:23.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:23.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:23.381][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2025-06-28 16:02:23.382][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:02:23.382][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:02:23.383][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:02:23.387][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:02:23.388][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:02:23.389][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:02:23.390][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:02:23.391][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:23.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:23.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:23.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:23.394][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:23.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:23.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:23.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:23.398][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:02:23.399][private$selectFields]
biodb.TRACE[2025-06-28 16:02:23.400][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-06-28 16:02:23.401][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-06-28 16:02:23.401][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:02:23.402][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:23.403][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:23.404][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:23.405][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:23.406][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:23.407][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:23.408][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:23.409][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:23.410][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:02:23.410][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:02:23.411][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:23.412][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:23.413][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:23.414][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:23.415][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-06-28 16:02:23.416][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:23.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:23.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:23.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:23.419][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:23.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:23.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:23.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:23.423][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:23.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:23.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:23.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:23.427][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [62447].
biodb.DEBUG[2025-06-28 16:02:23.428][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-06-28 16:02:23.429][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-06-28 16:02:23.431][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:02:23.432][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:02:23.433][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:02:23.437][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:02:23.438][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:02:23.439][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:02:23.440][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-06-28 16:02:23.442][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.3*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-06-28 16:02:23.444][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
sched.DEBUG[2025-06-28 16:02:23.445][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-06-28 16:02:23.446][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-06-28 16:02:23.448][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.3%2A&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL".
sched.TRACE[2025-06-28 16:02:23.795][try_get_rcurl_content] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.3%2A&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL).
fscache.INFO [2025-06-28 16:02:24.145][private$cache$saveContents] Save 1 contents to /home/biocbuild/.cache/R/sched.
fscache.INFO [2025-06-28 16:02:24.151][private$cache$saveContents] Save 1 contents to /home/biocbuild/.cache/R/sched.
sched.DEBUG[2025-06-28 16:02:24.153][self$getBiodb()$getRequestScheduler( ...] Retrieved content saved to cache.
biodb.DEBUG[2025-06-28 16:02:24.159][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:02:24.161][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:02:24.163][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:02:24.173][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:02:24.175][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:02:24.177][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:02:24.179][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:02:24.181][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:24.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:24.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:24.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:24.206][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:24.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:24.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:24.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:24.211][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:24.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:24.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:24.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:02:24.216][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:02:24.217][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:02:24.219][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:02:24.223][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:02:24.224][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:02:24.225][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:02:24.226][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:02:24.228][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:24.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:24.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:24.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:24.231][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:24.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:24.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:24.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:24.235][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:24.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:24.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:24.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:02:24.239][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:02:24.240][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:02:24.241][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:02:24.244][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:02:24.245][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:02:24.246][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:02:24.247][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-28 16:02:24.248][private$loadEntries] Creating entries from ids [1]: "27495".
biodb.DEBUG[2025-06-28 16:02:24.249][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-06-28 16:02:24.250][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
biodb.DEBUG[2025-06-28 16:02:24.251][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-06-28 16:02:24.252][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-06-28 16:02:24.253][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-06-28 16:02:24.254][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-06-28 16:02:24.256][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:02:24.257][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:02:24.258][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:02:24.261][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:02:24.262][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:02:24.263][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:02:24.264][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-06-28 16:02:24.265][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=27495".
fscache.INFO [2025-06-28 16:02:24.267][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
sched.DEBUG[2025-06-28 16:02:24.268][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-06-28 16:02:24.268][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-06-28 16:02:24.270][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=27495".
sched.TRACE[2025-06-28 16:02:24.608][try_get_rcurl_content] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=27495).
fscache.INFO [2025-06-28 16:02:24.960][private$cache$saveContents] Save 1 contents to /home/biocbuild/.cache/R/sched.
fscache.INFO [2025-06-28 16:02:24.965][private$cache$saveContents] Save 1 contents to /home/biocbuild/.cache/R/sched.
sched.DEBUG[2025-06-28 16:02:24.967][scheduler$sendRequest] Retrieved content saved to cache.
fscache.INFO [2025-06-28 16:02:24.970][cch$saveContents] Save 1 contents to /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
biodb.DEBUG[2025-06-28 16:02:24.973][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-06-28 16:02:24.976][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-06-28 16:02:24.978][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-06-28 16:02:24.981][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:02:24.983][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:02:24.985][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:02:24.995][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:02:24.997][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:02:24.999][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:02:25.001][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:02:25.005][ef$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:25.007][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:25.009][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:25.010][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:25.012][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:25.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:25.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:25.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:25.019][ef$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:02:25.020][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:02:25.022][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:25.023][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:25.025][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:02:25.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:02:25.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:25.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:25.030][ef$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:02:25.031][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:02:25.032][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:25.033][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:25.035][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:02:25.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:02:25.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:25.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:25.039][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:02:25.041][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:02:25.042][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:25.043][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:25.044][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:02:25.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:02:25.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:25.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:25.048][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:02:25.049][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:02:25.050][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:25.051][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:25.052][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:02:25.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:02:25.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:25.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:25.055][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:02:25.056][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:02:25.057][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:25.058][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:25.059][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:02:25.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:02:25.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:25.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:25.063][ef$get] Asked field names are: mass.
biodb.TRACE[2025-06-28 16:02:25.064][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:25.065][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:25.066][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:25.067][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-06-28 16:02:25.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:25.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:25.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:25.071][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:25.071][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:25.072][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:25.073][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:25.074][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:25.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:25.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:25.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:25.078][ef$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:02:25.079][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:02:25.080][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:25.081][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:25.082][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:02:25.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:02:25.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:25.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:25.086][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-06-28 16:02:25.087][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:02:25.087][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:25.088][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:25.089][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-06-28 16:02:25.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:02:25.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:25.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:25.093][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:02:25.094][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:02:25.095][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:25.096][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:25.097][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:02:25.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:02:25.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:25.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:25.101][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:25.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:25.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:25.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:25.104][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:25.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:25.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:25.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:25.108][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:25.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:25.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:25.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:25.111][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:25.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:25.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:25.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:25.115][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:25.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:25.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:25.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:25.119][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:25.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:25.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:25.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:25.122][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:25.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:25.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:25.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:25.126][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:25.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:25.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:25.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:25.130][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:25.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:25.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:25.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:25.133][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:25.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:25.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:25.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:02:25.137][self$createEntryFromContent] Accession numbers: 27495.
biodb.TRACE[2025-06-28 16:02:25.138][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:25.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:25.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:25.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:25.142][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:25.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:25.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:25.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:25.145][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:25.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:25.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:25.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:02:25.149][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-06-28 16:02:25.151][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:02:25.152][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:02:25.153][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:02:25.157][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:02:25.158][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:02:25.159][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:02:25.160][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:02:25.161][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:25.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:25.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:25.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:25.164][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:25.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:25.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:25.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:25.168][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:02:25.169][private$selectFields]
biodb.TRACE[2025-06-28 16:02:25.170][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-06-28 16:02:25.171][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-06-28 16:02:25.171][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:02:25.172][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:25.173][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:25.174][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:25.175][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:25.176][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:25.177][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:25.178][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:25.179][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:25.180][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:02:25.180][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:02:25.181][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:25.182][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:25.183][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:25.184][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:25.185][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-06-28 16:02:25.186][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:25.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:25.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:25.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:25.189][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:25.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:25.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:25.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:25.201][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:25.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:25.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:25.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:25.205][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [16587].
biodb.DEBUG[2025-06-28 16:02:25.206][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:02:25.207][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:02:25.208][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:02:25.212][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:02:25.213][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:02:25.214][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:02:25.214][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:02:25.215][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:25.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:25.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:25.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:25.219][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:25.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:25.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:25.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:25.223][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:02:25.223][private$selectFields]
biodb.TRACE[2025-06-28 16:02:25.224][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-06-28 16:02:25.225][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-06-28 16:02:25.226][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:02:25.227][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:25.228][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:25.229][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:25.229][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:25.230][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:25.231][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:25.232][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:25.233][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:25.234][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:02:25.235][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:02:25.236][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:25.237][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:25.237][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:25.238][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:25.239][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-06-28 16:02:25.240][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:25.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:25.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:25.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:25.244][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:25.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:25.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:25.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:25.247][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:25.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:25.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:25.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:25.251][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [19804].
biodb.DEBUG[2025-06-28 16:02:25.252][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:02:25.253][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:02:25.254][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:02:25.258][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:02:25.258][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:02:25.259][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:02:25.260][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:02:25.261][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:25.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:25.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:25.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:25.265][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:25.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:25.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:25.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:25.268][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:02:25.269][private$selectFields]
biodb.TRACE[2025-06-28 16:02:25.270][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-06-28 16:02:25.271][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-06-28 16:02:25.272][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:02:25.272][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:25.273][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:25.274][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:25.275][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:25.276][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:25.277][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:25.278][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:25.279][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:25.279][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:02:25.280][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:02:25.281][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:25.282][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:25.283][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:25.284][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:25.285][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-06-28 16:02:25.286][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:25.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:25.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:25.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:25.289][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:25.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:25.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:25.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:25.293][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:25.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:25.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:25.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:25.297][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [27495].
biodb.DEBUG[2025-06-28 16:02:25.297][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-06-28 16:02:25.298][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-06-28 16:02:25.300][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:02:25.301][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:02:25.302][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:02:25.306][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:02:25.307][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:02:25.307][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:02:25.308][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-06-28 16:02:25.311][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.17*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-06-28 16:02:25.313][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-06-28 16:02:25.317][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/039d0a183be9e894c19f49abb7cadca8.content.
sched.DEBUG[2025-06-28 16:02:25.318][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-06-28 16:02:25.320][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:02:25.321][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:02:25.322][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:02:25.326][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:02:25.327][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:02:25.328][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:02:25.328][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:02:25.329][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:25.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:25.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:25.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:25.333][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:25.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:25.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:25.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:25.337][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:25.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:25.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:25.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:02:25.340][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:02:25.341][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:02:25.342][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:02:25.346][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:02:25.347][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:02:25.348][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:02:25.349][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:02:25.350][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:25.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:25.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:25.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:25.353][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:25.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:25.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:25.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:25.357][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:25.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:25.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:25.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:02:25.360][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:02:25.361][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:02:25.362][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:02:25.366][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:02:25.367][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:02:25.368][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:02:25.369][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:02:25.370][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:25.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:25.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:25.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:25.373][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:25.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:25.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:25.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:25.377][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:25.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:25.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:25.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:02:25.381][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:02:25.381][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:02:25.382][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:02:25.386][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:02:25.387][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:02:25.388][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:02:25.389][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-28 16:02:25.390][private$loadEntries] Creating entries from ids [1]: "65675".
biodb.DEBUG[2025-06-28 16:02:25.391][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-06-28 16:02:25.392][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
biodb.DEBUG[2025-06-28 16:02:25.393][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-06-28 16:02:25.394][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-06-28 16:02:25.395][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-06-28 16:02:25.396][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-06-28 16:02:25.398][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:02:25.399][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:02:25.400][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:02:25.404][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:02:25.405][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:02:25.406][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:02:25.407][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-06-28 16:02:25.408][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=65675".
fscache.INFO [2025-06-28 16:02:25.409][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
sched.DEBUG[2025-06-28 16:02:25.411][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-06-28 16:02:25.411][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-06-28 16:02:25.413][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=65675".
sched.TRACE[2025-06-28 16:02:25.754][try_get_rcurl_content] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=65675).
fscache.INFO [2025-06-28 16:02:26.100][private$cache$saveContents] Save 1 contents to /home/biocbuild/.cache/R/sched.
fscache.INFO [2025-06-28 16:02:26.105][private$cache$saveContents] Save 1 contents to /home/biocbuild/.cache/R/sched.
sched.DEBUG[2025-06-28 16:02:26.107][scheduler$sendRequest] Retrieved content saved to cache.
fscache.INFO [2025-06-28 16:02:26.111][cch$saveContents] Save 1 contents to /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
biodb.DEBUG[2025-06-28 16:02:26.113][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-06-28 16:02:26.116][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-06-28 16:02:26.118][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-06-28 16:02:26.122][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:02:26.124][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:02:26.126][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:02:26.135][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:02:26.137][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:02:26.139][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:02:26.141][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:02:26.145][ef$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:26.147][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:26.149][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:26.151][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:26.153][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:26.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:26.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:26.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:26.159][ef$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:02:26.161][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:02:26.162][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:26.163][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:26.165][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:02:26.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:02:26.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:26.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:26.170][ef$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:02:26.171][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:02:26.173][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:26.174][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:26.175][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:02:26.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:02:26.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:26.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:26.188][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:02:26.189][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:02:26.190][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:26.191][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:26.192][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:02:26.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:02:26.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:26.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:26.196][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:02:26.197][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:02:26.198][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:26.198][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:26.199][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:02:26.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:02:26.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:26.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:26.203][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:02:26.204][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:02:26.205][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:26.206][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:26.207][ef$get] Asked field names are: mass.
biodb.TRACE[2025-06-28 16:02:26.208][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:26.209][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:26.209][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:26.211][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-06-28 16:02:26.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:26.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:26.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:26.214][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:26.215][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:26.216][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:26.217][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:26.218][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:26.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:26.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:26.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:26.221][ef$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:02:26.222][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:02:26.223][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:26.224][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:26.225][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:02:26.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:02:26.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:26.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:26.229][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-06-28 16:02:26.230][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:02:26.231][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:26.231][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:26.233][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-06-28 16:02:26.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:02:26.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:26.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:26.236][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:02:26.237][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:02:26.238][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:26.239][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:26.240][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:02:26.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:02:26.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:26.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:26.243][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:26.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:26.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:26.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:26.247][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:26.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:26.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:26.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:26.250][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:26.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:26.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:26.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:26.254][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:26.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:26.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:26.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:26.258][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:26.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:26.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:26.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:26.261][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:26.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:26.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:26.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:26.265][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:26.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:26.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:26.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:26.268][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:26.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:26.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:26.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:26.272][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:26.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:26.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:26.275][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:26.275][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:26.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:26.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:26.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:02:26.279][self$createEntryFromContent] Accession numbers: 65675.
biodb.TRACE[2025-06-28 16:02:26.280][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:26.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:26.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:26.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:26.284][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:26.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:26.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:26.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:26.287][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:26.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:26.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:26.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:02:26.291][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:02:26.291][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:02:26.292][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:02:26.296][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:02:26.297][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:02:26.298][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:02:26.299][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-28 16:02:26.300][private$loadEntries] Creating entries from ids [1]: "66318".
biodb.DEBUG[2025-06-28 16:02:26.301][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-06-28 16:02:26.302][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
biodb.DEBUG[2025-06-28 16:02:26.303][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-06-28 16:02:26.304][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-06-28 16:02:26.305][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-06-28 16:02:26.306][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-06-28 16:02:26.308][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:02:26.309][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:02:26.310][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:02:26.314][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:02:26.315][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:02:26.315][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:02:26.316][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-06-28 16:02:26.317][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=66318".
fscache.INFO [2025-06-28 16:02:26.319][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
sched.DEBUG[2025-06-28 16:02:26.320][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-06-28 16:02:26.321][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-06-28 16:02:26.322][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=66318".
sched.TRACE[2025-06-28 16:02:26.661][try_get_rcurl_content] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=66318).
fscache.INFO [2025-06-28 16:02:27.014][private$cache$saveContents] Save 1 contents to /home/biocbuild/.cache/R/sched.
fscache.INFO [2025-06-28 16:02:27.019][private$cache$saveContents] Save 1 contents to /home/biocbuild/.cache/R/sched.
sched.DEBUG[2025-06-28 16:02:27.021][scheduler$sendRequest] Retrieved content saved to cache.
fscache.INFO [2025-06-28 16:02:27.024][cch$saveContents] Save 1 contents to /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
biodb.DEBUG[2025-06-28 16:02:27.027][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-06-28 16:02:27.030][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-06-28 16:02:27.032][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-06-28 16:02:27.036][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:02:27.038][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:02:27.039][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:02:27.049][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:02:27.051][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:02:27.053][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:02:27.055][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:02:27.060][ef$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:27.062][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:27.063][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:27.065][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:27.067][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:27.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:27.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:27.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:27.073][ef$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:02:27.075][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:02:27.076][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:27.077][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:27.079][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:02:27.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:02:27.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:27.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:27.084][ef$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:02:27.086][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:02:27.087][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:27.088][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:27.089][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:02:27.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:02:27.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:27.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:27.094][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:02:27.095][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:02:27.096][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:27.097][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:27.098][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:02:27.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:02:27.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:27.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:27.102][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:02:27.103][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:02:27.104][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:27.105][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:27.106][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:02:27.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:02:27.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:27.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:27.110][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:02:27.111][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:02:27.112][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:27.112][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:27.114][ef$get] Asked field names are: mass.
biodb.TRACE[2025-06-28 16:02:27.115][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:27.115][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:27.116][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:27.117][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-06-28 16:02:27.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:27.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:27.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:27.121][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:27.122][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:27.123][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:27.124][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:27.125][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:27.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:27.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:27.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:27.129][ef$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:02:27.130][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:02:27.131][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:27.132][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:27.134][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:02:27.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:02:27.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:27.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:27.137][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-06-28 16:02:27.138][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:02:27.139][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:27.140][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:27.141][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-06-28 16:02:27.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:02:27.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:27.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:27.145][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:02:27.146][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:02:27.147][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:27.148][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:27.149][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:02:27.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:02:27.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:27.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:27.152][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:27.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:27.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:27.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:27.156][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:27.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:27.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:27.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:27.160][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:27.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:27.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:27.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:27.163][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:27.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:27.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:27.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:27.175][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:27.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:27.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:27.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:27.179][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:27.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:27.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:27.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:27.182][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:27.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:27.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:27.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:27.186][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:27.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:27.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:27.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:27.189][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:27.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:27.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:27.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:27.193][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:27.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:27.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:27.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:02:27.197][self$createEntryFromContent] Accession numbers: 66318.
biodb.TRACE[2025-06-28 16:02:27.197][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:27.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:27.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:27.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:27.201][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:27.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:27.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:27.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:27.205][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:27.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:27.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:27.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:02:27.208][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:02:27.209][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:02:27.210][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:02:27.214][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:02:27.215][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:02:27.215][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:02:27.216][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-28 16:02:27.217][private$loadEntries] Creating entries from ids [1]: "67547".
biodb.DEBUG[2025-06-28 16:02:27.218][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-06-28 16:02:27.219][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
biodb.DEBUG[2025-06-28 16:02:27.220][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-06-28 16:02:27.221][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-06-28 16:02:27.222][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-06-28 16:02:27.223][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-06-28 16:02:27.225][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:02:27.226][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:02:27.227][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:02:27.231][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:02:27.232][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:02:27.233][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:02:27.233][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-06-28 16:02:27.234][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67547".
fscache.INFO [2025-06-28 16:02:27.236][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
sched.DEBUG[2025-06-28 16:02:27.237][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-06-28 16:02:27.238][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-06-28 16:02:27.239][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67547".
sched.TRACE[2025-06-28 16:02:27.578][try_get_rcurl_content] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67547).
fscache.INFO [2025-06-28 16:02:28.004][private$cache$saveContents] Save 1 contents to /home/biocbuild/.cache/R/sched.
fscache.INFO [2025-06-28 16:02:28.009][private$cache$saveContents] Save 1 contents to /home/biocbuild/.cache/R/sched.
sched.DEBUG[2025-06-28 16:02:28.011][scheduler$sendRequest] Retrieved content saved to cache.
fscache.INFO [2025-06-28 16:02:28.014][cch$saveContents] Save 1 contents to /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
biodb.DEBUG[2025-06-28 16:02:28.017][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-06-28 16:02:28.020][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-06-28 16:02:28.022][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-06-28 16:02:28.026][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:02:28.027][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:02:28.029][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:02:28.039][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:02:28.041][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:02:28.043][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:02:28.045][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:02:28.049][ef$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:28.051][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:28.053][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:28.054][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:28.056][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:28.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:28.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:28.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:28.063][ef$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:02:28.064][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:02:28.065][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:28.067][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:28.068][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:02:28.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:02:28.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:28.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:28.074][ef$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:02:28.075][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:02:28.076][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:28.077][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:28.079][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:02:28.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:02:28.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:28.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:28.083][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:02:28.084][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:02:28.085][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:28.086][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:28.087][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:02:28.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:02:28.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:28.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:28.091][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:02:28.093][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:02:28.093][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:28.094][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:28.095][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:02:28.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:02:28.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:28.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:28.099][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:02:28.100][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:02:28.101][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:28.102][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:28.103][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:02:28.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:02:28.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:28.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:28.107][ef$get] Asked field names are: mass.
biodb.TRACE[2025-06-28 16:02:28.108][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:28.108][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:28.109][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:28.110][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-06-28 16:02:28.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:28.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:28.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:28.114][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:28.115][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:28.116][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:28.117][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:28.118][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:28.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:28.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:28.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:28.122][ef$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:02:28.122][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:02:28.123][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:28.124][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:28.125][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:02:28.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:02:28.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:28.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:28.129][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-06-28 16:02:28.130][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:02:28.131][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:28.132][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:28.133][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-06-28 16:02:28.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:02:28.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:28.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:28.136][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:02:28.137][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:02:28.138][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:28.139][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:28.140][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:02:28.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:02:28.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:28.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:28.144][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:28.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:28.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:28.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:28.148][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:28.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:28.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:28.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:28.151][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:28.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:28.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:28.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:28.155][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:28.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:28.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:28.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:28.158][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:28.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:28.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:28.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:28.162][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:28.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:28.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:28.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:28.166][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:28.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:28.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:28.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:28.169][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:28.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:28.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:28.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:28.173][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:28.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:28.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:28.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:28.176][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:28.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:28.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:28.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:02:28.180][self$createEntryFromContent] Accession numbers: 67547.
biodb.TRACE[2025-06-28 16:02:28.181][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:28.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:28.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:28.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:28.185][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:28.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:28.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:28.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:28.189][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:28.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:28.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:28.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:02:28.193][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:02:28.194][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:02:28.194][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:02:28.199][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:02:28.199][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:02:28.200][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:02:28.201][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-28 16:02:28.202][private$loadEntries] Creating entries from ids [1]: "69550".
biodb.DEBUG[2025-06-28 16:02:28.203][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-06-28 16:02:28.204][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
biodb.DEBUG[2025-06-28 16:02:28.205][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-06-28 16:02:28.206][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-06-28 16:02:28.207][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-06-28 16:02:28.208][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-06-28 16:02:28.211][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:02:28.211][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:02:28.212][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:02:28.216][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:02:28.217][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:02:28.218][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:02:28.219][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-06-28 16:02:28.220][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=69550".
fscache.INFO [2025-06-28 16:02:28.222][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
sched.DEBUG[2025-06-28 16:02:28.223][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-06-28 16:02:28.224][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-06-28 16:02:28.225][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=69550".
sched.TRACE[2025-06-28 16:02:28.570][try_get_rcurl_content] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=69550).
fscache.INFO [2025-06-28 16:02:28.925][private$cache$saveContents] Save 1 contents to /home/biocbuild/.cache/R/sched.
fscache.INFO [2025-06-28 16:02:28.930][private$cache$saveContents] Save 1 contents to /home/biocbuild/.cache/R/sched.
sched.DEBUG[2025-06-28 16:02:28.932][scheduler$sendRequest] Retrieved content saved to cache.
fscache.INFO [2025-06-28 16:02:28.935][cch$saveContents] Save 1 contents to /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
biodb.DEBUG[2025-06-28 16:02:28.938][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-06-28 16:02:28.940][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-06-28 16:02:28.943][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-06-28 16:02:28.946][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:02:28.948][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:02:28.950][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:02:28.960][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:02:28.962][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:02:28.964][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:02:28.965][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:02:28.969][ef$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:28.971][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:28.973][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:28.974][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:28.976][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:28.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:28.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:28.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:28.982][ef$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:02:28.983][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:02:28.985][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:28.986][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:28.988][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:02:28.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:02:28.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:28.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:28.992][ef$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:02:28.994][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:02:28.995][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:28.996][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:28.997][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:02:28.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:02:28.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:29.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:29.001][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:02:29.003][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:02:29.003][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:29.004][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:29.006][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:02:29.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:02:29.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:29.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:29.010][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:02:29.011][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:02:29.011][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:29.012][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:29.013][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:02:29.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:02:29.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:29.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:29.017][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:02:29.018][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:02:29.019][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:29.020][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:29.021][ef$get] Asked field names are: mass.
biodb.TRACE[2025-06-28 16:02:29.022][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:29.022][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:29.023][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:29.024][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-06-28 16:02:29.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:29.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:29.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:29.028][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:29.029][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:29.030][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:29.031][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:29.032][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:29.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:29.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:29.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:29.035][ef$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:02:29.036][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:02:29.037][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:29.038][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:29.039][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:02:29.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:02:29.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:29.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:29.043][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-06-28 16:02:29.044][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:02:29.045][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:29.045][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:29.047][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-06-28 16:02:29.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:02:29.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:29.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:29.050][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:02:29.051][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:02:29.052][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:29.053][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:29.054][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:02:29.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:02:29.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:29.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:29.058][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:29.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:29.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:29.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:29.061][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:29.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:29.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:29.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:29.065][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:29.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:29.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:29.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:29.068][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:29.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:29.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:29.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:29.072][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:29.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:29.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:29.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:29.076][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:29.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:29.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:29.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:29.079][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:29.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:29.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:29.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:29.083][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:29.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:29.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:29.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:29.087][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:29.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:29.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:29.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:29.090][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:29.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:29.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:29.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:02:29.094][self$createEntryFromContent] Accession numbers: 69550.
biodb.TRACE[2025-06-28 16:02:29.095][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:29.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:29.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:29.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:29.098][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:29.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:29.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:29.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:29.102][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:29.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:29.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:29.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:02:29.106][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:02:29.106][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:02:29.107][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:02:29.111][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:02:29.112][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:02:29.113][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:02:29.114][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-28 16:02:29.115][private$loadEntries] Creating entries from ids [1]: "71520".
biodb.DEBUG[2025-06-28 16:02:29.116][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-06-28 16:02:29.117][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
biodb.DEBUG[2025-06-28 16:02:29.118][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-06-28 16:02:29.119][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-06-28 16:02:29.120][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-06-28 16:02:29.121][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-06-28 16:02:29.123][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:02:29.124][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:02:29.125][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:02:29.129][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:02:29.130][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:02:29.131][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:02:29.131][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-06-28 16:02:29.132][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=71520".
fscache.INFO [2025-06-28 16:02:29.134][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
sched.DEBUG[2025-06-28 16:02:29.135][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-06-28 16:02:29.136][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-06-28 16:02:29.137][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=71520".
sched.TRACE[2025-06-28 16:02:29.477][try_get_rcurl_content] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=71520).
fscache.INFO [2025-06-28 16:02:29.827][private$cache$saveContents] Save 1 contents to /home/biocbuild/.cache/R/sched.
fscache.INFO [2025-06-28 16:02:29.831][private$cache$saveContents] Save 1 contents to /home/biocbuild/.cache/R/sched.
sched.DEBUG[2025-06-28 16:02:29.834][scheduler$sendRequest] Retrieved content saved to cache.
fscache.INFO [2025-06-28 16:02:29.837][cch$saveContents] Save 1 contents to /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
biodb.DEBUG[2025-06-28 16:02:29.840][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-06-28 16:02:29.842][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-06-28 16:02:29.845][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-06-28 16:02:29.848][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:02:29.850][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:02:29.852][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:02:29.862][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:02:29.864][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:02:29.866][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:02:29.868][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:02:29.872][ef$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:29.874][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:29.876][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:29.877][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:29.879][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:29.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:29.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:29.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:29.885][ef$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:02:29.887][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:02:29.888][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:29.890][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:29.891][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:02:29.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:02:29.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:29.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:29.897][ef$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:02:29.898][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:02:29.899][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:29.900][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:29.902][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:02:29.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:02:29.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:29.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:29.907][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:02:29.908][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:02:29.909][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:29.910][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:29.911][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:02:29.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:02:29.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:29.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:29.915][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:02:29.916][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:02:29.917][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:29.918][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:29.919][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:02:29.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:02:29.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:29.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:29.923][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:02:29.924][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:02:29.924][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:29.925][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:29.926][ef$get] Asked field names are: mass.
biodb.TRACE[2025-06-28 16:02:29.927][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:29.928][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:29.929][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:29.930][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-06-28 16:02:29.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:29.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:29.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:29.934][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:29.935][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:29.936][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:29.940][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:29.947][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:29.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:29.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:29.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:29.951][ef$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:02:29.952][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:02:29.953][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:29.954][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:29.955][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:02:29.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:02:29.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:29.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:29.958][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-06-28 16:02:29.959][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:02:29.960][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:29.961][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:29.962][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-06-28 16:02:29.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:02:29.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:29.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:29.966][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:02:29.967][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:02:29.968][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:29.968][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:29.969][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:02:29.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:02:29.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:29.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:29.973][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:29.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:29.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:29.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:29.977][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:29.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:29.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:29.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:29.980][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:29.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:29.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:29.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:29.984][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:29.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:29.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:29.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:29.987][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:29.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:29.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:29.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:29.991][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:29.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:29.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:29.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:29.994][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:29.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:29.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:29.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:29.998][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:29.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:30.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:30.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:30.002][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:30.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:30.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:30.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:30.005][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:30.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:30.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:30.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:02:30.009][self$createEntryFromContent] Accession numbers: 71520.
biodb.TRACE[2025-06-28 16:02:30.010][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:30.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:30.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:30.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:30.013][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:30.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:30.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:30.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:30.017][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:30.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:30.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:30.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:02:30.020][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:02:30.021][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:02:30.022][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:02:30.026][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:02:30.027][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:02:30.027][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:02:30.028][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-28 16:02:30.029][private$loadEntries] Creating entries from ids [1]: "77600".
biodb.DEBUG[2025-06-28 16:02:30.030][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-06-28 16:02:30.031][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
biodb.DEBUG[2025-06-28 16:02:30.032][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-06-28 16:02:30.033][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-06-28 16:02:30.034][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-06-28 16:02:30.035][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-06-28 16:02:30.038][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:02:30.038][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:02:30.039][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:02:30.043][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:02:30.044][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:02:30.045][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:02:30.045][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-06-28 16:02:30.047][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=77600".
fscache.INFO [2025-06-28 16:02:30.048][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
sched.DEBUG[2025-06-28 16:02:30.049][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-06-28 16:02:30.050][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-06-28 16:02:30.051][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=77600".
sched.TRACE[2025-06-28 16:02:30.392][try_get_rcurl_content] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=77600).
fscache.INFO [2025-06-28 16:02:30.746][private$cache$saveContents] Save 1 contents to /home/biocbuild/.cache/R/sched.
fscache.INFO [2025-06-28 16:02:30.750][private$cache$saveContents] Save 1 contents to /home/biocbuild/.cache/R/sched.
sched.DEBUG[2025-06-28 16:02:30.753][scheduler$sendRequest] Retrieved content saved to cache.
fscache.INFO [2025-06-28 16:02:30.756][cch$saveContents] Save 1 contents to /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
biodb.DEBUG[2025-06-28 16:02:30.758][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-06-28 16:02:30.761][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-06-28 16:02:30.764][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-06-28 16:02:30.767][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:02:30.769][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:02:30.771][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:02:30.781][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:02:30.783][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:02:30.785][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:02:30.786][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:02:30.790][ef$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:30.792][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:30.794][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:30.796][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:30.797][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:30.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:30.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:30.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:30.804][ef$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:02:30.805][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:02:30.806][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:30.808][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:30.809][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:02:30.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:02:30.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:30.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:30.814][ef$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:02:30.816][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:02:30.817][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:30.818][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:30.819][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:02:30.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:02:30.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:30.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:30.824][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:02:30.825][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:02:30.826][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:30.827][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:30.828][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:02:30.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:02:30.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:30.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:30.832][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:02:30.833][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:02:30.834][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:30.835][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:30.836][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:02:30.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:02:30.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:30.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:30.839][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:02:30.840][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:02:30.841][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:30.842][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:30.843][ef$get] Asked field names are: mass.
biodb.TRACE[2025-06-28 16:02:30.844][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:30.845][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:30.846][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:30.847][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-06-28 16:02:30.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:30.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:30.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:30.851][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:30.852][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:30.852][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:30.853][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:30.854][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:30.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:30.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:30.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:30.858][ef$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:02:30.859][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:02:30.860][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:30.861][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:30.862][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:02:30.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:02:30.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:30.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:30.866][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-06-28 16:02:30.867][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:02:30.867][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:30.868][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:30.869][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-06-28 16:02:30.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:02:30.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:30.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:30.873][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:02:30.874][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:02:30.875][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:30.876][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:30.877][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:02:30.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:02:30.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:30.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:30.881][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:30.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:30.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:30.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:30.884][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:30.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:30.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:30.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:30.888][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:30.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:30.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:30.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:30.892][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:30.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:30.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:30.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:30.896][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:30.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:30.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:30.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:30.899][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:30.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:30.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:30.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:30.903][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:30.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:30.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:30.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:30.907][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:30.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:30.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:30.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:30.910][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:30.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:30.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:30.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:30.914][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:30.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:30.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:30.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:02:30.918][self$createEntryFromContent] Accession numbers: 77600.
biodb.TRACE[2025-06-28 16:02:30.919][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:30.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:30.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:30.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:30.922][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:30.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:30.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:30.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:30.934][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:30.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:30.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:30.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:02:30.938][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:02:30.939][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:02:30.939][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:02:30.943][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:02:30.944][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:02:30.945][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:02:30.946][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-28 16:02:30.947][private$loadEntries] Creating entries from ids [1]: "77601".
biodb.DEBUG[2025-06-28 16:02:30.948][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-06-28 16:02:30.949][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
biodb.DEBUG[2025-06-28 16:02:30.950][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-06-28 16:02:30.951][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-06-28 16:02:30.952][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-06-28 16:02:30.953][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-06-28 16:02:30.955][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:02:30.956][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:02:30.957][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:02:30.961][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:02:30.962][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:02:30.962][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:02:30.963][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-06-28 16:02:30.964][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=77601".
fscache.INFO [2025-06-28 16:02:30.966][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
sched.DEBUG[2025-06-28 16:02:30.967][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-06-28 16:02:30.968][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-06-28 16:02:30.969][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=77601".
sched.TRACE[2025-06-28 16:02:31.310][try_get_rcurl_content] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=77601).
fscache.INFO [2025-06-28 16:02:31.657][private$cache$saveContents] Save 1 contents to /home/biocbuild/.cache/R/sched.
fscache.INFO [2025-06-28 16:02:31.661][private$cache$saveContents] Save 1 contents to /home/biocbuild/.cache/R/sched.
sched.DEBUG[2025-06-28 16:02:31.664][scheduler$sendRequest] Retrieved content saved to cache.
fscache.INFO [2025-06-28 16:02:31.667][cch$saveContents] Save 1 contents to /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
biodb.DEBUG[2025-06-28 16:02:31.670][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-06-28 16:02:31.672][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-06-28 16:02:31.675][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-06-28 16:02:31.678][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:02:31.680][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:02:31.682][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:02:31.692][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:02:31.694][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:02:31.696][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:02:31.698][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:02:31.702][ef$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:31.704][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:31.706][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:31.707][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:31.709][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:31.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:31.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:31.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:31.715][ef$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:02:31.717][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:02:31.718][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:31.719][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:31.721][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:02:31.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:02:31.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:31.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:31.726][ef$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:02:31.728][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:02:31.729][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:31.730][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:31.731][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:02:31.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:02:31.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:31.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:31.736][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:02:31.737][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:02:31.738][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:31.739][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:31.740][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:02:31.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:02:31.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:31.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:31.744][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:02:31.745][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:02:31.746][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:31.747][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:31.748][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:02:31.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:02:31.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:31.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:31.751][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:02:31.752][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:02:31.753][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:31.754][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:31.755][ef$get] Asked field names are: mass.
biodb.TRACE[2025-06-28 16:02:31.756][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:31.757][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:31.758][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:31.759][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-06-28 16:02:31.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:31.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:31.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:31.763][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:31.764][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:31.765][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:31.765][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:31.767][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:31.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:31.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:31.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:31.770][ef$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:02:31.771][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:02:31.772][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:31.773][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:31.774][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:02:31.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:02:31.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:31.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:31.778][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-06-28 16:02:31.779][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:02:31.780][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:31.781][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:31.782][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-06-28 16:02:31.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:02:31.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:31.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:31.786][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:02:31.787][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:02:31.788][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:31.788][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:31.790][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:02:31.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:02:31.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:31.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:31.793][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:31.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:31.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:31.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:31.797][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:31.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:31.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:31.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:31.800][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:31.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:31.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:31.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:31.804][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:31.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:31.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:31.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:31.808][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:31.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:31.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:31.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:31.811][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:31.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:31.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:31.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:31.815][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:31.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:31.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:31.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:31.819][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:31.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:31.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:31.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:31.822][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:31.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:31.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:31.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:31.826][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:31.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:31.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:31.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:02:31.829][self$createEntryFromContent] Accession numbers: 77601.
biodb.TRACE[2025-06-28 16:02:31.830][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:31.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:31.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:31.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:31.834][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:31.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:31.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:31.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:31.838][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:31.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:31.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:31.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:02:31.841][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-06-28 16:02:31.843][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:02:31.844][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:02:31.845][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:02:31.849][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:02:31.850][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:02:31.851][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:02:31.851][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:02:31.852][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:31.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:31.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:31.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:31.856][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:31.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:31.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:31.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:31.860][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:02:31.861][private$selectFields]
biodb.TRACE[2025-06-28 16:02:31.861][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-06-28 16:02:31.862][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-06-28 16:02:31.863][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:02:31.864][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:31.865][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:31.866][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:31.867][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:31.868][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:31.869][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:31.870][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:31.871][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:31.872][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:02:31.873][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:02:31.874][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:31.875][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:31.875][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:31.876][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:31.877][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-06-28 16:02:31.878][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:31.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:31.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:31.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:31.882][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:31.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:31.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:31.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:31.886][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:31.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:31.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:31.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:31.890][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [64199].
biodb.DEBUG[2025-06-28 16:02:31.891][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:02:31.891][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:02:31.892][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:02:31.896][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:02:31.897][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:02:31.898][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:02:31.899][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:02:31.900][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:31.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:31.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:31.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:31.904][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:31.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:31.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:31.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:31.907][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:02:31.908][private$selectFields]
biodb.TRACE[2025-06-28 16:02:31.909][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-06-28 16:02:31.918][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-06-28 16:02:31.919][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:02:31.920][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:31.921][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:31.922][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:31.923][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:31.924][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:31.925][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:31.926][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:31.926][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:31.927][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:02:31.928][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:02:31.929][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:31.930][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:31.931][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:31.932][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:31.933][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-06-28 16:02:31.934][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:31.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:31.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:31.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:31.937][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:31.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:31.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:31.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:31.941][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:31.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:31.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:31.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:31.945][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [77600].
biodb.DEBUG[2025-06-28 16:02:31.946][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:02:31.946][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:02:31.947][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:02:31.951][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:02:31.952][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:02:31.953][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:02:31.954][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:02:31.955][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:31.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:31.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:31.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:31.958][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:31.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:31.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:31.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:31.962][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:02:31.963][private$selectFields]
biodb.TRACE[2025-06-28 16:02:31.964][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-06-28 16:02:31.964][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-06-28 16:02:31.965][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:02:31.966][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:31.967][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:31.968][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:31.969][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:31.970][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:31.971][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:31.972][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:31.972][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:31.973][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:02:31.974][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:02:31.975][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:31.976][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:31.977][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:31.978][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:31.979][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-06-28 16:02:31.979][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:31.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:31.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:31.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:31.983][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:31.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:31.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:31.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:31.987][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:31.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:31.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:31.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:31.990][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [77601].
biodb.DEBUG[2025-06-28 16:02:31.991][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-06-28 16:02:31.992][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2025-06-28 16:02:32.000][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2025-06-28 16:02:32.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2025-06-28 16:02:32.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:32.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:32.003][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2025-06-28 16:02:32.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2025-06-28 16:02:32.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:32.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:32.007][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2025-06-28 16:02:32.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2025-06-28 16:02:32.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:32.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2025-06-28 16:02:32.013][biodb::testThat]
biodb.INFO [2025-06-28 16:02:32.014][biodb::testThat] Running test function test_annotateMzValues_input_dataframe_untouched (" Input data frame is not modified by annotateMzValues() ").
biodb.INFO [2025-06-28 16:02:32.015][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-06-28 16:02:32.016][biodb::testThat]
biodb.TRACE[2025-06-28 16:02:32.019][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-06-28 16:02:32.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-06-28 16:02:32.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:32.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:32.022][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-06-28 16:02:32.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-06-28 16:02:32.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:32.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:32.026][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-06-28 16:02:32.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-06-28 16:02:32.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:32.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:32.030][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:32.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:32.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:32.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:32.033][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:32.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:32.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:32.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:32.037][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:32.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:32.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:32.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:32.041][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:32.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:32.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:32.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:32.044][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:32.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:32.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:32.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:32.048][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:32.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:32.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:32.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:32.052][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:32.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:32.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:32.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:32.055][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:32.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:32.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:32.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:32.059][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:32.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:32.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:32.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:32.063][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:32.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:32.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:32.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:32.066][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:32.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:32.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:32.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:32.070][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:32.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:32.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:32.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:02:32.077][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:02:32.078][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:02:32.079][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:02:32.083][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:02:32.084][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:02:32.085][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:02:32.086][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-06-28 16:02:32.088][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-06-28 16:02:32.090][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-06-28 16:02:32.092][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/8fc54eee7e982ce554bee8000d8203f7.content.
sched.DEBUG[2025-06-28 16:02:32.093][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-06-28 16:02:32.095][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:02:32.096][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:02:32.097][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:02:32.101][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:02:32.102][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:02:32.102][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:02:32.103][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:02:32.104][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:32.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:32.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:32.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:32.108][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:32.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:32.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:32.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:32.112][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:32.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:32.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:32.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
sched.DEBUG[2025-06-28 16:02:32.116][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-06-28 16:02:32.118][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-06-28 16:02:32.120][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/6def615835d7c1dfccd5a5f135bd2f9d.content.
sched.DEBUG[2025-06-28 16:02:32.121][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-06-28 16:02:32.123][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:02:32.124][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:02:32.125][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:02:32.129][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:02:32.130][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:02:32.131][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:02:32.132][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:02:32.133][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:32.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:32.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:32.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:32.137][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:32.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:32.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:32.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:32.141][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:32.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:32.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:32.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:02:32.145][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:02:32.145][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:02:32.146][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:02:32.150][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:02:32.151][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:02:32.152][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:02:32.153][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:02:32.154][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:32.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:32.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:32.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:32.158][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:32.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:32.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:32.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:32.162][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:32.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:32.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:32.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:02:32.165][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-06-28 16:02:32.167][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:02:32.168][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:02:32.168][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:02:32.173][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:02:32.178][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:02:32.179][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:02:32.180][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:02:32.181][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:32.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:32.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:32.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:32.185][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:32.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:32.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:32.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:32.188][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:02:32.189][private$selectFields]
biodb.TRACE[2025-06-28 16:02:32.190][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-06-28 16:02:32.191][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-06-28 16:02:32.192][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:02:32.193][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:32.194][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:32.194][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:32.195][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:32.196][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:32.197][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:32.198][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:32.199][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:32.200][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:02:32.201][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:02:32.201][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:32.202][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:32.203][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:32.204][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:32.205][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-06-28 16:02:32.206][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:32.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:32.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:32.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:32.209][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:32.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:32.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:32.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:32.213][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:32.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:32.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:32.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:32.217][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [192288].
biodb.DEBUG[2025-06-28 16:02:32.218][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:02:32.218][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:02:32.219][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:02:32.223][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:02:32.224][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:02:32.225][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:02:32.226][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:02:32.227][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:32.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:32.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:32.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:32.230][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:32.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:32.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:32.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:32.234][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:02:32.235][private$selectFields]
biodb.TRACE[2025-06-28 16:02:32.235][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-06-28 16:02:32.236][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-06-28 16:02:32.237][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:02:32.238][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:32.239][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:32.240][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:32.241][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:32.241][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:32.242][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:32.243][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:32.244][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:32.245][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:02:32.246][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:02:32.247][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:32.248][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:32.248][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:32.249][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:32.250][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-06-28 16:02:32.251][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:32.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:32.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:32.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:32.255][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:32.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:32.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:32.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:32.258][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:32.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:32.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:32.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:32.262][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2025-06-28 16:02:32.263][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:02:32.264][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:02:32.265][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:02:32.269][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:02:32.269][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:02:32.270][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:02:32.271][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:02:32.272][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:32.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:32.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:32.275][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:32.276][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:32.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:32.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:32.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:32.279][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:02:32.280][private$selectFields]
biodb.TRACE[2025-06-28 16:02:32.281][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-06-28 16:02:32.282][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-06-28 16:02:32.283][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:02:32.283][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:32.284][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:32.285][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:32.286][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:32.287][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:32.288][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:32.289][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:32.290][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:32.291][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:02:32.291][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:02:32.292][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:32.293][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:32.294][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:32.295][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:32.296][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-06-28 16:02:32.297][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:32.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:32.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:32.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:32.300][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:32.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:32.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:32.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:32.304][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:32.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:32.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:32.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:32.308][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [209892].
biodb.DEBUG[2025-06-28 16:02:32.309][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-06-28 16:02:32.310][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-06-28 16:02:32.312][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:02:32.313][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:02:32.313][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:02:32.317][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:02:32.318][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:02:32.319][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:02:32.320][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-06-28 16:02:32.322][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-06-28 16:02:32.325][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-06-28 16:02:32.327][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/013adb879cee6d4257067df9ba0a8c7b.content.
sched.DEBUG[2025-06-28 16:02:32.327][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-06-28 16:02:32.329][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:02:32.330][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:02:32.331][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:02:32.335][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:02:32.336][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:02:32.337][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:02:32.338][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:02:32.339][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:32.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:32.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:32.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:32.342][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:32.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:32.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:32.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:32.346][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:32.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:32.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:32.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:02:32.350][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:02:32.350][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:02:32.351][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:02:32.355][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:02:32.356][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:02:32.357][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:02:32.358][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:02:32.359][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:32.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:32.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:32.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:32.362][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:32.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:32.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:32.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:32.366][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:32.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:32.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:32.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
sched.DEBUG[2025-06-28 16:02:32.370][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.63*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-06-28 16:02:32.373][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-06-28 16:02:32.375][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/d37a10a1f6afae785eb4d1943c254641.content.
sched.DEBUG[2025-06-28 16:02:32.376][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-06-28 16:02:32.379][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:02:32.380][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:02:32.380][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:02:32.384][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:02:32.385][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:02:32.386][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:02:32.387][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:02:32.388][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:32.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:32.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:32.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:32.392][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:32.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:32.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:32.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:32.396][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:32.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:32.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:32.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:02:32.400][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:02:32.401][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:02:32.401][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:02:32.405][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:02:32.406][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:02:32.407][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:02:32.408][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:02:32.409][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:32.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:32.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:32.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:32.412][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:32.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:32.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:32.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:32.416][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:32.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:32.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:32.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:02:32.420][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:02:32.420][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:02:32.421][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:02:32.425][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:02:32.426][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:02:32.427][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:02:32.428][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:02:32.429][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:32.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:32.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:32.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:32.437][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:32.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:32.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:32.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:32.441][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:32.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:32.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:32.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:02:32.444][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-06-28 16:02:32.446][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:02:32.447][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:02:32.447][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:02:32.451][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:02:32.452][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:02:32.453][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:02:32.454][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:02:32.455][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:32.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:32.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:32.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:32.458][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:32.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:32.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:32.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:32.462][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:02:32.463][private$selectFields]
biodb.TRACE[2025-06-28 16:02:32.463][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-06-28 16:02:32.464][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-06-28 16:02:32.465][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:02:32.466][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:32.467][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:32.468][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:32.469][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:32.469][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:32.470][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:32.471][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:32.472][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:32.473][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:02:32.474][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:02:32.475][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:32.476][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:32.476][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:32.477][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:32.478][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-06-28 16:02:32.479][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:32.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:32.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:32.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:32.483][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:32.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:32.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:32.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:32.486][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:32.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:32.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:32.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:32.490][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2025-06-28 16:02:32.491][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:02:32.492][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:02:32.493][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:02:32.496][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:02:32.497][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:02:32.498][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:02:32.499][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:02:32.500][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:32.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:32.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:32.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:32.503][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:32.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:32.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:32.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:32.507][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:02:32.508][private$selectFields]
biodb.TRACE[2025-06-28 16:02:32.509][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-06-28 16:02:32.509][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-06-28 16:02:32.510][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:02:32.511][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:32.512][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:32.513][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:32.514][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:32.515][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:32.516][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:32.517][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:32.517][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:32.518][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:02:32.519][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:02:32.520][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:32.521][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:32.522][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:32.523][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:32.524][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-06-28 16:02:32.525][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:32.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:32.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:32.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:32.528][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:32.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:32.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:32.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:32.532][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:32.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:32.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:32.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:32.536][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [16587].
biodb.DEBUG[2025-06-28 16:02:32.537][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:02:32.537][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:02:32.538][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:02:32.542][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:02:32.543][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:02:32.544][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:02:32.545][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:02:32.546][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:32.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:32.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:32.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:32.549][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:32.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:32.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:32.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:32.553][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:02:32.554][private$selectFields]
biodb.TRACE[2025-06-28 16:02:32.555][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-06-28 16:02:32.556][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-06-28 16:02:32.556][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:02:32.557][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:32.558][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:32.559][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:32.560][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:32.561][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:32.562][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:32.563][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:32.564][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:32.565][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:02:32.566][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:02:32.566][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:32.567][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:32.568][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:32.569][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:32.570][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-06-28 16:02:32.571][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:32.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:32.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:32.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:32.574][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:32.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:32.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:32.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:32.578][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:32.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:32.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:32.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:32.582][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [19804].
biodb.DEBUG[2025-06-28 16:02:32.583][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-06-28 16:02:32.584][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-06-28 16:02:32.586][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:02:32.587][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:02:32.587][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:02:32.591][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:02:32.592][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:02:32.593][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:02:32.594][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-06-28 16:02:32.596][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-06-28 16:02:32.599][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-06-28 16:02:32.601][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/618204bc3e9a685033db1d9be9d78d44.content.
sched.DEBUG[2025-06-28 16:02:32.602][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-06-28 16:02:32.604][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:02:32.605][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:02:32.606][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:02:32.610][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:02:32.611][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:02:32.612][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:02:32.612][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:02:32.613][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:32.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:32.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:32.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:32.617][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:32.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:32.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:32.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:32.621][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:32.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:32.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:32.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:02:32.624][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:02:32.625][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:02:32.626][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:02:32.630][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:02:32.631][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:02:32.631][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:02:32.632][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:02:32.633][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:32.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:32.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:32.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:32.637][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:32.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:32.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:32.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:32.641][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:32.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:32.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:32.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:02:32.645][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:02:32.645][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:02:32.646][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:02:32.650][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:02:32.651][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:02:32.652][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:02:32.653][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:02:32.654][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:32.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:32.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:32.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:32.658][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:32.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:32.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:32.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:32.661][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:32.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:32.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:32.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:02:32.665][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:02:32.666][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:02:32.667][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:02:32.670][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:02:32.671][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:02:32.672][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:02:32.673][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:02:32.674][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:32.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:32.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:32.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:32.678][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:32.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:32.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:32.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:32.681][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:32.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:32.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:32.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:02:32.689][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:02:32.690][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:02:32.691][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:02:32.695][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:02:32.696][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:02:32.697][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:02:32.697][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:02:32.698][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:32.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:32.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:32.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:32.702][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:32.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:32.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:32.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:32.706][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:32.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:32.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:32.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:02:32.709][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:02:32.710][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:02:32.711][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:02:32.715][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:02:32.716][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:02:32.716][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:02:32.717][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:02:32.718][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:32.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:32.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:32.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:32.722][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:32.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:32.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:32.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:32.725][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:32.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:32.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:32.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:02:32.729][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:02:32.730][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:02:32.730][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:02:32.734][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:02:32.735][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:02:32.736][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:02:32.737][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:02:32.738][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:32.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:32.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:32.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:32.741][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:32.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:32.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:32.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:32.745][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:32.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:32.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:32.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:02:32.748][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:02:32.749][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:02:32.750][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:02:32.754][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:02:32.755][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:02:32.755][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:02:32.756][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:02:32.757][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:32.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:32.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:32.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:32.761][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:32.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:32.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:32.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:32.764][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:32.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:32.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:32.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
sched.DEBUG[2025-06-28 16:02:32.769][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-06-28 16:02:32.771][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-06-28 16:02:32.773][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/e0540b0a9d3ba75ce1522ce23f76319e.content.
sched.DEBUG[2025-06-28 16:02:32.774][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-06-28 16:02:32.776][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:02:32.777][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:02:32.777][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:02:32.781][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:02:32.782][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:02:32.783][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:02:32.784][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:02:32.785][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:32.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:32.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:32.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:32.788][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:32.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:32.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:32.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:32.792][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:32.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:32.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:32.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:02:32.796][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:02:32.796][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:02:32.797][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:02:32.801][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:02:32.802][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:02:32.803][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:02:32.804][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:02:32.805][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:32.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:32.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:32.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:32.808][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:32.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:32.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:32.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:32.812][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:32.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:32.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:32.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:02:32.816][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:02:32.816][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:02:32.817][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:02:32.821][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:02:32.822][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:02:32.823][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:02:32.824][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:02:32.825][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:32.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:32.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:32.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:32.828][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:32.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:32.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:32.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:32.832][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:32.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:32.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:32.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:02:32.836][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-06-28 16:02:32.837][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:02:32.838][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:02:32.839][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:02:32.843][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:02:32.844][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:02:32.844][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:02:32.845][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:02:32.846][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:32.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:32.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:32.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:32.850][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:32.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:32.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:32.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:32.854][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:02:32.854][private$selectFields]
biodb.TRACE[2025-06-28 16:02:32.855][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-06-28 16:02:32.856][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-06-28 16:02:32.857][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:02:32.858][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:32.859][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:32.860][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:32.861][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:32.861][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:32.862][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:32.863][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:32.864][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:32.865][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:02:32.866][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:02:32.867][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:32.868][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:32.869][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:32.870][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:32.870][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-06-28 16:02:32.871][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:32.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:32.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:32.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:32.875][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:32.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:32.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:32.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:32.879][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:32.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:32.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:32.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:32.883][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [7799].
biodb.DEBUG[2025-06-28 16:02:32.884][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:02:32.884][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:02:32.885][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:02:32.889][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:02:32.890][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:02:32.891][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:02:32.892][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:02:32.893][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:32.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:32.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:32.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:32.897][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:32.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:32.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:32.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:32.901][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:02:32.902][private$selectFields]
biodb.TRACE[2025-06-28 16:02:32.902][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-06-28 16:02:32.903][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-06-28 16:02:32.904][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:02:32.905][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:32.906][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:32.907][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:32.908][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:32.909][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:32.910][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:32.911][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:32.912][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:32.913][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:02:32.914][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:02:32.914][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:32.915][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:32.916][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:32.917][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:32.918][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-06-28 16:02:32.919][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:32.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:32.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:32.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:32.923][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:32.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:32.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:32.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:32.926][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:32.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:32.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:32.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:32.930][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [71954].
biodb.DEBUG[2025-06-28 16:02:32.931][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:02:32.932][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:02:32.933][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:02:32.941][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:02:32.942][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:02:32.944][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:02:32.945][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:02:32.946][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:32.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:32.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:32.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:32.949][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:32.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:32.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:32.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:32.953][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:02:32.954][private$selectFields]
biodb.TRACE[2025-06-28 16:02:32.955][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-06-28 16:02:32.956][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-06-28 16:02:32.956][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:02:32.957][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:32.958][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:32.959][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:32.960][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:32.961][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:32.962][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:32.963][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:32.964][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:32.965][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:02:32.966][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:02:32.966][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:32.967][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:32.968][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:32.969][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:32.970][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-06-28 16:02:32.971][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:32.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:32.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:32.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:32.974][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:32.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:32.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:32.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:32.978][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:32.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:32.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:32.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:32.982][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [197612].
biodb.DEBUG[2025-06-28 16:02:32.983][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-06-28 16:02:32.984][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2025-06-28 16:02:32.999][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:33.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:33.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:33.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:33.003][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:33.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:33.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:33.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:33.007][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:33.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:33.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:33.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:33.010][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:33.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:33.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:33.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:33.014][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:33.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:33.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:33.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:33.017][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:33.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:33.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:33.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:33.021][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:33.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:33.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:33.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:33.025][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:33.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:33.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:33.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:33.028][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:33.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:33.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:33.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:33.032][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:33.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:33.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:33.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:33.035][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:33.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:33.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:33.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:33.039][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:33.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:33.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:33.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:02:33.046][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:02:33.047][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:02:33.048][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:02:33.052][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:02:33.052][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:02:33.053][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:02:33.054][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-06-28 16:02:33.057][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-06-28 16:02:33.059][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-06-28 16:02:33.061][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/2e865a03592d6effdf242ff63104f35a.content.
sched.DEBUG[2025-06-28 16:02:33.062][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
sched.DEBUG[2025-06-28 16:02:33.064][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-06-28 16:02:33.067][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-06-28 16:02:33.069][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/f0c73645ca32490f91d503a462d812b2.content.
sched.DEBUG[2025-06-28 16:02:33.070][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-06-28 16:02:33.072][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:02:33.073][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:02:33.074][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:02:33.078][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:02:33.079][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:02:33.079][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:02:33.080][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:02:33.081][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:33.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:33.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:33.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:33.085][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:33.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:33.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:33.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:33.089][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:33.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:33.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:33.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:02:33.092][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:02:33.093][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:02:33.094][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:02:33.098][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:02:33.099][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:02:33.100][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:02:33.101][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:02:33.102][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:33.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:33.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:33.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:33.105][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:33.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:33.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:33.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:33.109][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:33.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:33.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:33.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:02:33.113][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:02:33.113][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:02:33.114][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:02:33.118][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:02:33.119][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:02:33.120][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:02:33.121][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:02:33.122][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:33.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:33.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:33.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:33.125][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:33.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:33.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:33.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:33.129][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:33.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:33.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:33.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:02:33.133][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-06-28 16:02:33.134][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:02:33.135][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:02:33.136][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:02:33.140][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:02:33.140][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:02:33.141][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:02:33.142][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:02:33.143][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:33.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:33.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:33.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:33.147][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:33.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:33.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:33.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:33.150][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:02:33.151][private$selectFields]
biodb.TRACE[2025-06-28 16:02:33.152][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-06-28 16:02:33.153][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-06-28 16:02:33.154][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:02:33.155][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:33.156][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:33.157][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:33.158][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:33.159][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:33.160][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:33.161][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:33.162][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:33.163][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:02:33.164][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:02:33.165][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:33.166][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:33.166][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:33.167][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:33.168][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-06-28 16:02:33.169][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:33.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:33.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:33.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:33.173][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:33.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:33.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:33.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:33.176][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:33.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:33.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:33.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:33.180][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4648].
biodb.DEBUG[2025-06-28 16:02:33.181][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:02:33.182][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:02:33.183][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:02:33.187][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:02:33.188][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:02:33.188][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:02:33.189][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:02:33.190][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:33.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:33.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:33.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:33.198][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:33.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:33.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:33.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:33.203][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:02:33.203][private$selectFields]
biodb.TRACE[2025-06-28 16:02:33.204][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-06-28 16:02:33.205][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-06-28 16:02:33.206][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:02:33.207][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:33.208][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:33.209][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:33.209][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:33.210][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:33.211][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:33.212][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:33.213][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:33.214][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:02:33.215][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:02:33.216][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:33.217][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:33.217][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:33.218][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:33.219][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-06-28 16:02:33.220][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:33.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:33.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:33.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:33.224][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:33.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:33.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:33.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:33.227][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:33.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:33.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:33.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:33.231][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2025-06-28 16:02:33.232][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:02:33.233][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:02:33.234][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:02:33.237][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:02:33.238][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:02:33.239][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:02:33.240][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:02:33.241][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:33.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:33.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:33.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:33.244][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:33.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:33.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:33.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:33.248][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:02:33.249][private$selectFields]
biodb.TRACE[2025-06-28 16:02:33.250][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-06-28 16:02:33.251][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-06-28 16:02:33.251][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:02:33.252][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:33.253][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:33.254][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:33.255][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:33.256][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:33.257][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:33.258][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:33.258][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:33.259][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:02:33.260][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:02:33.261][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:33.262][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:33.263][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:33.264][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:33.265][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-06-28 16:02:33.265][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:33.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:33.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:33.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:33.269][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:33.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:33.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:33.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:33.273][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:33.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:33.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:33.275][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:33.276][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [62447].
biodb.DEBUG[2025-06-28 16:02:33.277][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-06-28 16:02:33.278][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-06-28 16:02:33.280][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:02:33.281][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:02:33.282][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:02:33.286][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:02:33.287][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:02:33.287][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:02:33.288][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-06-28 16:02:33.291][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.29*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-06-28 16:02:33.293][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-06-28 16:02:33.296][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/aad5aa7c63b98774a5df46d96a4e7cac.content.
sched.DEBUG[2025-06-28 16:02:33.296][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-06-28 16:02:33.299][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:02:33.299][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:02:33.300][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:02:33.304][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:02:33.305][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:02:33.306][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:02:33.307][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:02:33.308][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:33.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:33.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:33.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:33.311][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:33.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:33.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:33.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:33.315][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:33.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:33.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:33.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:02:33.319][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:02:33.319][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:02:33.320][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:02:33.324][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:02:33.325][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:02:33.326][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:02:33.327][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:02:33.328][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:33.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:33.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:33.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:33.331][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:33.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:33.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:33.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:33.335][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:33.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:33.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:33.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:02:33.338][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:02:33.339][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:02:33.340][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:02:33.344][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:02:33.345][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:02:33.346][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:02:33.346][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:02:33.348][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:33.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:33.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:33.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:33.351][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:33.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:33.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:33.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:33.355][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:33.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:33.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:33.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:02:33.359][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-06-28 16:02:33.360][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:02:33.361][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:02:33.362][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:02:33.366][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:02:33.366][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:02:33.367][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:02:33.368][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:02:33.369][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:33.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:33.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:33.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:33.373][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:33.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:33.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:33.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:33.376][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:02:33.377][private$selectFields]
biodb.TRACE[2025-06-28 16:02:33.378][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-06-28 16:02:33.379][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-06-28 16:02:33.380][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:02:33.381][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:33.382][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:33.383][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:33.384][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:33.384][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:33.385][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:33.386][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:33.387][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:33.388][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:02:33.389][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:02:33.390][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:33.391][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:33.392][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:33.392][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:33.393][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-06-28 16:02:33.394][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:33.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:33.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:33.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:33.398][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:33.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:33.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:33.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:33.402][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:33.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:33.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:33.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:33.406][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2025-06-28 16:02:33.407][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:02:33.408][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:02:33.408][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:02:33.413][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:02:33.414][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:02:33.415][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:02:33.415][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:02:33.417][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:33.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:33.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:33.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:33.420][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:33.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:33.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:33.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:33.424][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:02:33.425][private$selectFields]
biodb.TRACE[2025-06-28 16:02:33.426][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-06-28 16:02:33.427][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-06-28 16:02:33.427][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:02:33.428][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:33.429][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:33.430][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:33.431][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:33.432][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:33.433][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:33.434][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:33.435][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:33.435][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:02:33.436][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:02:33.437][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:33.438][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:33.439][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:33.440][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:33.441][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-06-28 16:02:33.442][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:33.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:33.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:33.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:33.445][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:33.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:33.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:33.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:33.454][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:33.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:33.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:33.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:33.458][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [91601].
biodb.DEBUG[2025-06-28 16:02:33.459][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:02:33.460][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:02:33.461][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:02:33.465][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:02:33.465][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:02:33.466][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:02:33.467][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:02:33.468][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:33.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:33.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:33.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:33.472][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:33.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:33.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:33.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:33.475][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:02:33.476][private$selectFields]
biodb.TRACE[2025-06-28 16:02:33.477][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-06-28 16:02:33.478][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-06-28 16:02:33.478][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:02:33.479][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:33.480][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:33.481][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:33.482][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:33.483][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:33.484][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:33.485][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:33.486][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:33.486][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:02:33.487][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:02:33.488][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:33.489][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:33.490][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:33.491][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:33.492][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-06-28 16:02:33.493][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:33.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:33.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:33.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:33.496][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:33.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:33.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:33.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:33.500][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:33.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:33.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:33.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:33.503][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [95147].
biodb.DEBUG[2025-06-28 16:02:33.504][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-06-28 16:02:33.505][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-06-28 16:02:33.507][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:02:33.508][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:02:33.509][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:02:33.513][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:02:33.513][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:02:33.514][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:02:33.515][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-06-28 16:02:33.517][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.17*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-06-28 16:02:33.520][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-06-28 16:02:33.523][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/039d0a183be9e894c19f49abb7cadca8.content.
sched.DEBUG[2025-06-28 16:02:33.524][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-06-28 16:02:33.527][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:02:33.528][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:02:33.528][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:02:33.532][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:02:33.533][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:02:33.534][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:02:33.535][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:02:33.536][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:33.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:33.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:33.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:33.539][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:33.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:33.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:33.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:33.543][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:33.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:33.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:33.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:02:33.546][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:02:33.547][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:02:33.548][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:02:33.552][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:02:33.553][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:02:33.553][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:02:33.554][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:02:33.555][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:33.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:33.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:33.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:33.559][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:33.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:33.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:33.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:33.562][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:33.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:33.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:33.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:02:33.566][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:02:33.567][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:02:33.568][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:02:33.571][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:02:33.572][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:02:33.573][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:02:33.574][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:02:33.575][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:33.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:33.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:33.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:33.579][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:33.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:33.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:33.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:33.582][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:33.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:33.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:33.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:02:33.586][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-06-28 16:02:33.587][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:02:33.588][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:02:33.589][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:02:33.593][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:02:33.594][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:02:33.595][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:02:33.595][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:02:33.596][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:33.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:33.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:33.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:33.600][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:33.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:33.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:33.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:33.604][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:02:33.605][private$selectFields]
biodb.TRACE[2025-06-28 16:02:33.606][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-06-28 16:02:33.606][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-06-28 16:02:33.607][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:02:33.608][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:33.609][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:33.610][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:33.611][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:33.612][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:33.613][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:33.614][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:33.614][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:33.615][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:02:33.616][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:02:33.617][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:33.618][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:33.619][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:33.620][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:33.621][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-06-28 16:02:33.622][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:33.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:33.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:33.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:33.625][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:33.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:33.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:33.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:33.629][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:33.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:33.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:33.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:33.633][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [636].
biodb.DEBUG[2025-06-28 16:02:33.634][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:02:33.635][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:02:33.635][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:02:33.639][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:02:33.640][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:02:33.641][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:02:33.642][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:02:33.643][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:33.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:33.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:33.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:33.647][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:33.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:33.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:33.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:33.650][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:02:33.651][private$selectFields]
biodb.TRACE[2025-06-28 16:02:33.652][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-06-28 16:02:33.653][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-06-28 16:02:33.654][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:02:33.655][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:33.655][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:33.656][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:33.657][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:33.658][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:33.659][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:33.660][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:33.661][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:33.662][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:02:33.663][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:02:33.664][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:33.665][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:33.666][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:33.667][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:33.668][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-06-28 16:02:33.669][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:33.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:33.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:33.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:33.673][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:33.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:33.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:33.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:33.676][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:33.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:33.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:33.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:33.680][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [64199].
biodb.DEBUG[2025-06-28 16:02:33.681][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:02:33.682][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:02:33.683][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:02:33.687][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:02:33.687][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:02:33.688][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:02:33.689][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:02:33.690][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:33.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:33.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:33.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:33.694][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:33.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:33.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:33.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:33.697][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:02:33.698][private$selectFields]
biodb.TRACE[2025-06-28 16:02:33.699][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-06-28 16:02:33.700][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-06-28 16:02:33.701][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:02:33.706][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:33.707][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:33.708][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:33.709][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:33.710][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:33.711][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:33.712][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:33.713][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:33.714][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:02:33.715][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:02:33.716][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:33.717][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:33.717][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:33.718][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:33.719][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-06-28 16:02:33.720][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:33.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:33.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:33.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:33.724][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:33.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:33.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:33.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:33.727][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:33.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:33.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:33.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:33.731][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [65648].
biodb.DEBUG[2025-06-28 16:02:33.732][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-06-28 16:02:33.733][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2025-06-28 16:02:33.748][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2025-06-28 16:02:33.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2025-06-28 16:02:33.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:33.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:33.752][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2025-06-28 16:02:33.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2025-06-28 16:02:33.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:33.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:33.755][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2025-06-28 16:02:33.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2025-06-28 16:02:33.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:33.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:33.761][ef$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:02:33.762][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:02:33.763][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:33.764][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:33.765][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:33.766][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:33.766][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:33.767][ef$get] fields variable is a list.
biodb.INFO [2025-06-28 16:02:33.769][biodb::testThat]
biodb.INFO [2025-06-28 16:02:33.770][biodb::testThat] Running test function test.annotateMzValues_real_values (" annotateMzValues() works correctly with real values. ").
biodb.INFO [2025-06-28 16:02:33.770][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-06-28 16:02:33.771][biodb::testThat]
biodb.TRACE[2025-06-28 16:02:33.774][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-06-28 16:02:33.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-06-28 16:02:33.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:33.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:33.777][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-06-28 16:02:33.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-06-28 16:02:33.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:33.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:33.781][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-06-28 16:02:33.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-06-28 16:02:33.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:33.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:33.784][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:33.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:33.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:33.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:33.788][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:33.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:33.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:33.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:33.792][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:33.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:33.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:33.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:33.795][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:33.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:33.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:33.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:33.799][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:33.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:33.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:33.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:33.802][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:33.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:33.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:33.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:33.806][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:33.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:33.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:33.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:33.810][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:33.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:33.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:33.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:33.813][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:33.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:33.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:33.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:33.817][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:33.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:33.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:33.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:33.820][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:33.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:33.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:33.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:33.824][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:33.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:33.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:33.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:02:33.830][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:02:33.831][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:02:33.831][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:02:33.836][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:02:33.836][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:02:33.837][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:02:33.838][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-06-28 16:02:33.840][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-06-28 16:02:33.843][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
sched.DEBUG[2025-06-28 16:02:33.844][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-06-28 16:02:33.845][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-06-28 16:02:33.846][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
sched.TRACE[2025-06-28 16:02:34.194][try_get_rcurl_content] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
fscache.INFO [2025-06-28 16:02:34.720][private$cache$saveContents] Save 1 contents to /home/biocbuild/.cache/R/sched.
fscache.INFO [2025-06-28 16:02:34.726][private$cache$saveContents] Save 1 contents to /home/biocbuild/.cache/R/sched.
sched.DEBUG[2025-06-28 16:02:34.728][self$getBiodb()$getRequestScheduler( ...] Retrieved content saved to cache.
biodb.DEBUG[2025-06-28 16:02:34.739][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:02:34.741][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:02:34.743][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:02:34.752][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:02:34.754][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:02:34.756][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:02:34.758][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-28 16:02:34.761][private$loadEntries] Creating entries from ids [1]: "3014".
biodb.DEBUG[2025-06-28 16:02:34.762][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-06-28 16:02:34.765][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
biodb.DEBUG[2025-06-28 16:02:34.767][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-06-28 16:02:34.769][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-06-28 16:02:34.770][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-06-28 16:02:34.772][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-06-28 16:02:34.776][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:02:34.777][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:02:34.778][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:02:34.784][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:02:34.786][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:02:34.787][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:02:34.788][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-06-28 16:02:34.789][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=3014".
fscache.INFO [2025-06-28 16:02:34.792][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
sched.DEBUG[2025-06-28 16:02:34.793][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-06-28 16:02:34.794][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-06-28 16:02:34.796][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=3014".
sched.TRACE[2025-06-28 16:02:35.134][try_get_rcurl_content] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=3014).
fscache.INFO [2025-06-28 16:02:35.483][private$cache$saveContents] Save 1 contents to /home/biocbuild/.cache/R/sched.
fscache.INFO [2025-06-28 16:02:35.488][private$cache$saveContents] Save 1 contents to /home/biocbuild/.cache/R/sched.
sched.DEBUG[2025-06-28 16:02:35.490][scheduler$sendRequest] Retrieved content saved to cache.
fscache.INFO [2025-06-28 16:02:35.493][cch$saveContents] Save 1 contents to /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
biodb.DEBUG[2025-06-28 16:02:35.496][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-06-28 16:02:35.499][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-06-28 16:02:35.501][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-06-28 16:02:35.504][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:02:35.506][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:02:35.508][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:02:35.518][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:02:35.520][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:02:35.522][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:02:35.524][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:02:35.528][ef$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:35.530][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:35.532][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:35.534][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:35.536][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:35.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:35.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:35.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:35.542][ef$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:02:35.544][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:02:35.545][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:35.546][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:35.548][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:02:35.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:02:35.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:35.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:35.553][ef$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:02:35.555][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:02:35.556][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:35.557][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:35.558][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:02:35.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:02:35.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:35.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:35.563][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:02:35.564][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:02:35.565][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:35.566][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:35.567][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:02:35.568][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:02:35.569][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:35.570][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:35.571][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:02:35.572][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:02:35.573][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:35.574][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:35.575][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:02:35.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:02:35.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:35.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:35.579][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:02:35.580][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:02:35.581][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:35.582][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:35.583][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:02:35.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:02:35.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:35.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:35.598][ef$get] Asked field names are: mass.
biodb.TRACE[2025-06-28 16:02:35.599][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:35.600][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:35.600][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:35.602][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-06-28 16:02:35.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:35.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:35.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:35.605][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:35.606][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:35.607][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:35.608][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:35.609][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:35.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:35.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:35.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:35.613][ef$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:02:35.614][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:02:35.614][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:35.615][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:35.616][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:02:35.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:02:35.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:35.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:35.620][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-06-28 16:02:35.621][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:02:35.622][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:35.623][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:35.624][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-06-28 16:02:35.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:02:35.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:35.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:35.627][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:02:35.628][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:02:35.629][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:35.630][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:35.631][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:02:35.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:02:35.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:35.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:35.635][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:35.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:35.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:35.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:35.638][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:35.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:35.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:35.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:35.642][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:35.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:35.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:35.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:35.645][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:35.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:35.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:35.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:35.649][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:35.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:35.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:35.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:35.652][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:35.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:35.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:35.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:35.656][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:35.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:35.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:35.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:35.660][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:35.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:35.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:35.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:35.663][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:35.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:35.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:35.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:35.667][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:35.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:35.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:35.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:02:35.670][self$createEntryFromContent] Accession numbers: 3014.
biodb.TRACE[2025-06-28 16:02:35.671][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:35.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:35.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:35.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:35.675][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:35.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:35.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:35.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:35.678][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:35.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:35.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:35.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:02:35.682][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:02:35.683][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:02:35.684][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:02:35.688][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:02:35.689][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:02:35.689][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:02:35.690][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-28 16:02:35.691][private$loadEntries] Creating entries from ids [1]: "7567".
biodb.DEBUG[2025-06-28 16:02:35.692][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-06-28 16:02:35.693][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
biodb.DEBUG[2025-06-28 16:02:35.694][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-06-28 16:02:35.695][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-06-28 16:02:35.696][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-06-28 16:02:35.697][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-06-28 16:02:35.699][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:02:35.700][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:02:35.701][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:02:35.705][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:02:35.706][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:02:35.707][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:02:35.707][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-06-28 16:02:35.708][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7567".
fscache.INFO [2025-06-28 16:02:35.710][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
sched.DEBUG[2025-06-28 16:02:35.711][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-06-28 16:02:35.712][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-06-28 16:02:35.713][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7567".
sched.TRACE[2025-06-28 16:02:36.052][try_get_rcurl_content] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=7567).
fscache.INFO [2025-06-28 16:02:36.397][private$cache$saveContents] Save 1 contents to /home/biocbuild/.cache/R/sched.
fscache.INFO [2025-06-28 16:02:36.401][private$cache$saveContents] Save 1 contents to /home/biocbuild/.cache/R/sched.
sched.DEBUG[2025-06-28 16:02:36.403][scheduler$sendRequest] Retrieved content saved to cache.
fscache.INFO [2025-06-28 16:02:36.406][cch$saveContents] Save 1 contents to /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
biodb.DEBUG[2025-06-28 16:02:36.408][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-06-28 16:02:36.411][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-06-28 16:02:36.413][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-06-28 16:02:36.416][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:02:36.417][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:02:36.419][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:02:36.427][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:02:36.429][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:02:36.430][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:02:36.432][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:02:36.436][ef$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:36.438][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:36.439][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:36.441][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:36.443][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:36.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:36.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:36.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:36.449][ef$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:02:36.450][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:02:36.452][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:36.453][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:36.455][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:02:36.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:02:36.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:36.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:36.460][ef$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:02:36.461][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:02:36.462][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:36.463][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:36.465][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:02:36.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:02:36.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:36.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:36.469][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:02:36.470][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:02:36.471][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:36.472][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:36.473][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:02:36.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:02:36.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:36.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:36.477][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:02:36.478][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:02:36.479][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:36.480][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:36.481][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:02:36.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:02:36.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:36.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:36.485][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:02:36.486][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:02:36.487][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:36.488][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:36.489][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:02:36.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:02:36.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:36.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:36.492][ef$get] Asked field names are: mass.
biodb.TRACE[2025-06-28 16:02:36.493][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:36.494][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:36.495][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:36.496][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-06-28 16:02:36.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:36.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:36.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:36.500][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:36.501][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:36.502][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:36.503][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:36.504][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:36.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:36.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:36.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:36.508][ef$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:02:36.509][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:02:36.509][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:36.510][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:36.512][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:02:36.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:02:36.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:36.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:36.515][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-06-28 16:02:36.516][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:02:36.517][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:36.518][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:36.519][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-06-28 16:02:36.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:02:36.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:36.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:36.523][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:02:36.524][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:02:36.525][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:36.526][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:36.527][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:02:36.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:02:36.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:36.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:36.531][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:36.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:36.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:36.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:36.535][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:36.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:36.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:36.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:36.538][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:36.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:36.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:36.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:36.542][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:36.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:36.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:36.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:36.546][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:36.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:36.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:36.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:36.549][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:36.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:36.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:36.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:36.553][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:36.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:36.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:36.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:36.565][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:36.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:36.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:36.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:36.569][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:36.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:36.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:36.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:36.573][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:36.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:36.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:36.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:02:36.576][self$createEntryFromContent] Accession numbers: 7567.
biodb.TRACE[2025-06-28 16:02:36.577][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:36.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:36.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:36.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:36.581][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:36.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:36.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:36.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:36.584][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:36.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:36.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:36.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:02:36.588][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:02:36.589][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:02:36.590][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:02:36.594][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:02:36.595][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:02:36.595][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:02:36.596][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-28 16:02:36.597][private$loadEntries] Creating entries from ids [1]: "8021".
biodb.DEBUG[2025-06-28 16:02:36.598][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-06-28 16:02:36.599][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
biodb.DEBUG[2025-06-28 16:02:36.600][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-06-28 16:02:36.601][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-06-28 16:02:36.602][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-06-28 16:02:36.603][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-06-28 16:02:36.605][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:02:36.606][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:02:36.607][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:02:36.611][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:02:36.612][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:02:36.613][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:02:36.613][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-06-28 16:02:36.615][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=8021".
fscache.INFO [2025-06-28 16:02:36.616][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
sched.DEBUG[2025-06-28 16:02:36.617][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-06-28 16:02:36.618][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-06-28 16:02:36.619][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=8021".
sched.TRACE[2025-06-28 16:02:36.956][try_get_rcurl_content] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=8021).
fscache.INFO [2025-06-28 16:02:37.312][private$cache$saveContents] Save 1 contents to /home/biocbuild/.cache/R/sched.
fscache.INFO [2025-06-28 16:02:37.317][private$cache$saveContents] Save 1 contents to /home/biocbuild/.cache/R/sched.
sched.DEBUG[2025-06-28 16:02:37.319][scheduler$sendRequest] Retrieved content saved to cache.
fscache.INFO [2025-06-28 16:02:37.322][cch$saveContents] Save 1 contents to /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
biodb.DEBUG[2025-06-28 16:02:37.325][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-06-28 16:02:37.328][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-06-28 16:02:37.330][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-06-28 16:02:37.334][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:02:37.336][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:02:37.337][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:02:37.347][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:02:37.349][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:02:37.351][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:02:37.353][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:02:37.357][ef$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:37.359][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:37.361][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:37.363][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:37.365][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:37.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:37.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:37.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:37.371][ef$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:02:37.372][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:02:37.374][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:37.375][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:37.377][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:02:37.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:02:37.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:37.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:37.382][ef$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:02:37.383][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:02:37.384][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:37.385][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:37.387][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:02:37.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:02:37.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:37.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:37.391][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:02:37.392][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:02:37.393][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:37.394][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:37.395][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:02:37.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:02:37.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:37.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:37.399][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:02:37.400][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:02:37.401][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:37.402][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:37.403][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:02:37.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:02:37.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:37.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:37.407][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:02:37.408][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:02:37.409][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:37.410][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:37.411][ef$get] Asked field names are: mass.
biodb.TRACE[2025-06-28 16:02:37.412][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:37.413][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:37.413][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:37.415][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-06-28 16:02:37.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:37.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:37.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:37.418][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:37.419][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:37.420][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:37.421][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:37.422][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:37.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:37.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:37.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:37.426][ef$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:02:37.427][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:02:37.428][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:37.429][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:37.430][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:02:37.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:02:37.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:37.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:37.433][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-06-28 16:02:37.434][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:02:37.435][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:37.436][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:37.437][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-06-28 16:02:37.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:02:37.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:37.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:37.441][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:02:37.442][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:02:37.443][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:37.444][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:37.445][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:02:37.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:02:37.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:37.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:37.449][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:37.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:37.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:37.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:37.452][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:37.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:37.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:37.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:37.456][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:37.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:37.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:37.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:37.460][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:37.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:37.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:37.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:37.463][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:37.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:37.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:37.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:37.467][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:37.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:37.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:37.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:37.470][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:37.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:37.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:37.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:37.474][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:37.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:37.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:37.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:37.478][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:37.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:37.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:37.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:37.481][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:37.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:37.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:37.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:02:37.485][self$createEntryFromContent] Accession numbers: 8021.
biodb.TRACE[2025-06-28 16:02:37.486][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:37.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:37.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:37.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:37.490][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:37.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:37.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:37.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:37.493][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:37.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:37.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:37.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:02:37.497][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:02:37.498][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:02:37.499][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:02:37.503][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:02:37.504][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:02:37.505][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:02:37.506][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-28 16:02:37.507][private$loadEntries] Creating entries from ids [1]: "30382".
biodb.DEBUG[2025-06-28 16:02:37.508][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-06-28 16:02:37.509][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
biodb.DEBUG[2025-06-28 16:02:37.510][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-06-28 16:02:37.511][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-06-28 16:02:37.512][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-06-28 16:02:37.513][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-06-28 16:02:37.516][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:02:37.516][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:02:37.517][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:02:37.521][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:02:37.522][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:02:37.523][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:02:37.524][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-06-28 16:02:37.525][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=30382".
fscache.INFO [2025-06-28 16:02:37.527][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
sched.DEBUG[2025-06-28 16:02:37.528][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-06-28 16:02:37.529][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-06-28 16:02:37.530][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=30382".
sched.TRACE[2025-06-28 16:02:37.868][try_get_rcurl_content] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=30382).
fscache.INFO [2025-06-28 16:02:38.211][private$cache$saveContents] Save 1 contents to /home/biocbuild/.cache/R/sched.
fscache.INFO [2025-06-28 16:02:38.216][private$cache$saveContents] Save 1 contents to /home/biocbuild/.cache/R/sched.
sched.DEBUG[2025-06-28 16:02:38.218][scheduler$sendRequest] Retrieved content saved to cache.
fscache.INFO [2025-06-28 16:02:38.221][cch$saveContents] Save 1 contents to /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
biodb.DEBUG[2025-06-28 16:02:38.224][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-06-28 16:02:38.227][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-06-28 16:02:38.229][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-06-28 16:02:38.232][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:02:38.241][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:02:38.255][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:02:38.263][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:02:38.265][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:02:38.266][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:02:38.267][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:02:38.271][ef$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:38.272][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:38.274][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:38.275][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:38.277][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:38.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:38.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:38.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:38.282][ef$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:02:38.283][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:02:38.284][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:38.285][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:38.287][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:02:38.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:02:38.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:38.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:38.291][ef$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:02:38.292][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:02:38.293][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:38.294][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:38.295][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:02:38.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:02:38.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:38.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:38.299][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:02:38.300][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:02:38.301][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:38.302][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:38.303][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:02:38.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:02:38.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:38.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:38.307][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:02:38.308][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:02:38.309][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:38.309][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:38.311][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:02:38.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:02:38.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:38.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:38.314][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:02:38.315][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:02:38.316][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:38.317][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:38.318][ef$get] Asked field names are: mass.
biodb.TRACE[2025-06-28 16:02:38.319][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:38.320][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:38.321][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:38.322][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-06-28 16:02:38.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:38.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:38.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:38.325][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:38.326][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:38.327][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:38.328][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:38.329][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:38.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:38.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:38.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:38.333][ef$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:02:38.334][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:02:38.334][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:38.335][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:38.337][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:02:38.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:02:38.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:38.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:38.340][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-06-28 16:02:38.341][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:02:38.342][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:38.343][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:38.344][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-06-28 16:02:38.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:02:38.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:38.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:38.348][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:02:38.349][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:02:38.349][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:38.350][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:38.351][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:02:38.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:02:38.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:38.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:38.355][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:38.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:38.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:38.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:38.359][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:38.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:38.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:38.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:38.362][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:38.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:38.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:38.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:38.366][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:38.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:38.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:38.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:38.369][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:38.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:38.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:38.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:38.373][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:38.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:38.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:38.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:38.376][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:38.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:38.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:38.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:38.380][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:38.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:38.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:38.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:38.384][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:38.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:38.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:38.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:38.387][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:38.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:38.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:38.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:02:38.391][self$createEntryFromContent] Accession numbers: 30382.
biodb.TRACE[2025-06-28 16:02:38.392][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:38.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:38.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:38.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:38.396][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:38.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:38.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:38.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:38.399][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:38.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:38.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:38.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:02:38.403][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-06-28 16:02:38.405][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:02:38.405][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:02:38.406][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:02:38.410][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:02:38.411][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:02:38.412][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:02:38.413][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:02:38.414][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:38.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:38.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:38.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:38.418][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:38.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:38.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:38.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:38.421][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:02:38.422][private$selectFields]
biodb.TRACE[2025-06-28 16:02:38.423][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-06-28 16:02:38.424][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-06-28 16:02:38.425][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:02:38.426][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:38.427][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:38.427][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:38.428][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:38.429][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:38.430][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:38.431][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:38.432][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:38.433][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:02:38.434][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:02:38.435][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:38.436][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:38.436][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:38.437][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:38.438][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-06-28 16:02:38.439][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:38.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:38.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:38.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:38.443][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:38.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:38.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:38.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:38.447][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:38.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:38.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:38.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:38.451][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [3014].
biodb.DEBUG[2025-06-28 16:02:38.452][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:02:38.452][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:02:38.453][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:02:38.457][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:02:38.458][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:02:38.459][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:02:38.460][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:02:38.461][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:38.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:38.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:38.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:38.465][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:38.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:38.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:38.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:38.468][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:02:38.469][private$selectFields]
biodb.TRACE[2025-06-28 16:02:38.470][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-06-28 16:02:38.471][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-06-28 16:02:38.472][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:02:38.473][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:38.474][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:38.475][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:38.475][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:38.476][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:38.477][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:38.478][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:38.479][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:38.480][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:02:38.481][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:02:38.482][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:38.483][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:38.484][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:38.485][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:38.486][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-06-28 16:02:38.487][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:38.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:38.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:38.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:38.491][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:38.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:38.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:38.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:38.494][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:38.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:38.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:38.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:38.498][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [8021].
biodb.DEBUG[2025-06-28 16:02:38.499][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:02:38.500][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:02:38.501][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:02:38.505][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:02:38.506][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:02:38.507][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:02:38.508][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:02:38.509][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:38.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:38.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:38.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:38.513][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:38.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:38.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:38.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:38.520][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:02:38.522][private$selectFields]
biodb.TRACE[2025-06-28 16:02:38.523][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-06-28 16:02:38.524][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-06-28 16:02:38.525][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:02:38.526][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:38.527][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:38.527][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:38.528][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:38.529][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:38.530][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:38.531][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:38.532][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:38.533][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:02:38.534][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:02:38.535][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:38.536][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:38.536][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:38.537][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:38.538][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-06-28 16:02:38.539][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:38.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:38.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:38.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:38.543][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:38.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:38.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:38.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:38.546][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:38.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:38.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:38.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:38.550][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [30382].
biodb.DEBUG[2025-06-28 16:02:38.551][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-06-28 16:02:38.552][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-06-28 16:02:38.554][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:02:38.554][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:02:38.555][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:02:38.559][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:02:38.560][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:02:38.561][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:02:38.562][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-06-28 16:02:38.564][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.4*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-06-28 16:02:38.567][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
sched.DEBUG[2025-06-28 16:02:38.567][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-06-28 16:02:38.568][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-06-28 16:02:38.570][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.4%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
sched.TRACE[2025-06-28 16:02:38.914][try_get_rcurl_content] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.4%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
fscache.INFO [2025-06-28 16:02:39.272][private$cache$saveContents] Save 1 contents to /home/biocbuild/.cache/R/sched.
fscache.INFO [2025-06-28 16:02:39.278][private$cache$saveContents] Save 1 contents to /home/biocbuild/.cache/R/sched.
sched.DEBUG[2025-06-28 16:02:39.280][self$getBiodb()$getRequestScheduler( ...] Retrieved content saved to cache.
biodb.DEBUG[2025-06-28 16:02:39.287][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:02:39.289][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:02:39.291][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:02:39.300][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:02:39.302][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:02:39.304][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:02:39.306][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-28 16:02:39.309][private$loadEntries] Creating entries from ids [1]: "9710".
biodb.DEBUG[2025-06-28 16:02:39.311][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-06-28 16:02:39.314][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
biodb.DEBUG[2025-06-28 16:02:39.316][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-06-28 16:02:39.318][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-06-28 16:02:39.320][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-06-28 16:02:39.322][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-06-28 16:02:39.325][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:02:39.326][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:02:39.327][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:02:39.331][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:02:39.332][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:02:39.333][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:02:39.333][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-06-28 16:02:39.334][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=9710".
fscache.INFO [2025-06-28 16:02:39.336][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
sched.DEBUG[2025-06-28 16:02:39.337][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-06-28 16:02:39.338][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-06-28 16:02:39.339][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=9710".
sched.TRACE[2025-06-28 16:02:39.689][try_get_rcurl_content] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=9710).
fscache.INFO [2025-06-28 16:02:40.036][private$cache$saveContents] Save 1 contents to /home/biocbuild/.cache/R/sched.
fscache.INFO [2025-06-28 16:02:40.041][private$cache$saveContents] Save 1 contents to /home/biocbuild/.cache/R/sched.
sched.DEBUG[2025-06-28 16:02:40.043][scheduler$sendRequest] Retrieved content saved to cache.
fscache.INFO [2025-06-28 16:02:40.046][cch$saveContents] Save 1 contents to /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
biodb.DEBUG[2025-06-28 16:02:40.049][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-06-28 16:02:40.052][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-06-28 16:02:40.054][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-06-28 16:02:40.058][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:02:40.060][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:02:40.062][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:02:40.071][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:02:40.073][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:02:40.075][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:02:40.077][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:02:40.081][ef$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:40.084][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:40.085][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:40.087][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:40.089][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:40.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:40.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:40.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:40.095][ef$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:02:40.097][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:02:40.098][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:40.100][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:40.101][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:02:40.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:02:40.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:40.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:40.107][ef$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:02:40.108][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:02:40.109][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:40.110][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:40.112][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:02:40.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:02:40.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:40.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:40.116][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:02:40.118][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:02:40.119][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:40.120][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:40.121][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:02:40.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:02:40.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:40.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:40.125][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:02:40.126][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:02:40.127][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:40.128][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:40.129][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:02:40.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:02:40.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:40.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:40.133][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:02:40.134][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:02:40.134][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:40.135][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:40.136][ef$get] Asked field names are: mass.
biodb.TRACE[2025-06-28 16:02:40.137][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:40.138][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:40.139][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:40.140][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-06-28 16:02:40.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:40.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:40.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:40.144][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:40.145][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:40.146][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:40.147][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:40.148][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:40.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:40.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:40.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:40.151][ef$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:02:40.152][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:02:40.153][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:40.154][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:40.155][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:02:40.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:02:40.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:40.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:40.159][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-06-28 16:02:40.160][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:02:40.161][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:40.162][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:40.163][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-06-28 16:02:40.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:02:40.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:40.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:40.174][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:02:40.175][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:02:40.176][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:40.177][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:40.178][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:02:40.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:02:40.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:40.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:40.183][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:40.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:40.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:40.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:40.187][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:40.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:40.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:40.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:40.191][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:40.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:40.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:40.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:40.195][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:40.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:40.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:40.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:40.199][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:40.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:40.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:40.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:40.204][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:40.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:40.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:40.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:40.209][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:40.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:40.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:40.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:40.214][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:40.215][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:40.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:40.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:40.219][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:40.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:40.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:40.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:40.223][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:40.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:40.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:40.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:02:40.227][self$createEntryFromContent] Accession numbers: 9710.
biodb.TRACE[2025-06-28 16:02:40.229][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:40.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:40.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:40.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:40.233][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:40.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:40.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:40.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:40.237][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:40.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:40.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:40.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:02:40.241][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:02:40.242][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:02:40.243][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:02:40.249][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:02:40.250][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:02:40.251][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:02:40.252][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-28 16:02:40.278][private$loadEntries] Creating entries from ids [1]: "65530".
biodb.DEBUG[2025-06-28 16:02:40.280][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-06-28 16:02:40.282][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
biodb.DEBUG[2025-06-28 16:02:40.283][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-06-28 16:02:40.284][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-06-28 16:02:40.285][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-06-28 16:02:40.286][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-06-28 16:02:40.289][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:02:40.290][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:02:40.291][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:02:40.296][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:02:40.297][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:02:40.297][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:02:40.298][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-06-28 16:02:40.299][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=65530".
fscache.INFO [2025-06-28 16:02:40.302][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
sched.DEBUG[2025-06-28 16:02:40.303][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-06-28 16:02:40.304][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-06-28 16:02:40.305][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=65530".
sched.TRACE[2025-06-28 16:02:40.660][try_get_rcurl_content] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=65530).
fscache.INFO [2025-06-28 16:02:41.011][private$cache$saveContents] Save 1 contents to /home/biocbuild/.cache/R/sched.
fscache.INFO [2025-06-28 16:02:41.017][private$cache$saveContents] Save 1 contents to /home/biocbuild/.cache/R/sched.
sched.DEBUG[2025-06-28 16:02:41.019][scheduler$sendRequest] Retrieved content saved to cache.
fscache.INFO [2025-06-28 16:02:41.023][cch$saveContents] Save 1 contents to /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
biodb.DEBUG[2025-06-28 16:02:41.025][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-06-28 16:02:41.029][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-06-28 16:02:41.031][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-06-28 16:02:41.035][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:02:41.037][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:02:41.040][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:02:41.050][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:02:41.052][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:02:41.053][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:02:41.055][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:02:41.060][ef$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:41.062][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:41.063][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:41.065][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:41.067][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:41.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:41.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:41.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:41.073][ef$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:02:41.074][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:02:41.076][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:41.077][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:41.079][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:02:41.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:02:41.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:41.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:41.084][ef$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:02:41.085][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:02:41.086][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:41.087][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:41.089][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:02:41.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:02:41.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:41.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:41.093][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:02:41.094][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:02:41.095][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:41.096][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:41.097][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:02:41.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:02:41.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:41.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:41.102][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:02:41.103][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:02:41.104][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:41.104][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:41.106][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:02:41.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:02:41.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:41.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:41.110][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:02:41.111][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:02:41.112][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:41.113][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:41.114][ef$get] Asked field names are: mass.
biodb.TRACE[2025-06-28 16:02:41.115][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:41.116][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:41.117][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:41.118][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-06-28 16:02:41.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:41.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:41.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:41.122][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:41.123][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:41.124][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:41.125][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:41.126][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:41.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:41.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:41.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:41.130][ef$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:02:41.131][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:02:41.132][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:41.133][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:41.134][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:02:41.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:02:41.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:41.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:41.138][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-06-28 16:02:41.139][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:02:41.140][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:41.141][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:41.142][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-06-28 16:02:41.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:02:41.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:41.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:41.146][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:02:41.147][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:02:41.148][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:41.149][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:41.151][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:02:41.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:02:41.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:41.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:41.155][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:41.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:41.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:41.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:41.158][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:41.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:41.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:41.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:41.162][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:41.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:41.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:41.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:41.166][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:41.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:41.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:41.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:41.170][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:41.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:41.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:41.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:41.174][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:41.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:41.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:41.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:41.178][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:41.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:41.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:41.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:41.182][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:41.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:41.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:41.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:41.186][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:41.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:41.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:41.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:41.190][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:41.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:41.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:41.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:02:41.194][self$createEntryFromContent] Accession numbers: 65530.
biodb.TRACE[2025-06-28 16:02:41.195][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:41.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:41.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:41.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:41.199][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:41.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:41.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:41.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:41.203][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:41.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:41.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:41.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:02:41.207][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:02:41.208][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:02:41.208][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:02:41.213][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:02:41.214][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:02:41.215][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:02:41.216][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-28 16:02:41.217][private$loadEntries] Creating entries from ids [1]: "72338".
biodb.DEBUG[2025-06-28 16:02:41.218][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-06-28 16:02:41.219][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
biodb.DEBUG[2025-06-28 16:02:41.220][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-06-28 16:02:41.221][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-06-28 16:02:41.222][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-06-28 16:02:41.223][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-06-28 16:02:41.225][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:02:41.226][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:02:41.227][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:02:41.231][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:02:41.232][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:02:41.232][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:02:41.233][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-06-28 16:02:41.234][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=72338".
fscache.INFO [2025-06-28 16:02:41.236][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
sched.DEBUG[2025-06-28 16:02:41.237][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-06-28 16:02:41.238][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-06-28 16:02:41.239][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=72338".
sched.TRACE[2025-06-28 16:02:41.590][try_get_rcurl_content] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=72338).
fscache.INFO [2025-06-28 16:02:41.927][private$cache$saveContents] Save 1 contents to /home/biocbuild/.cache/R/sched.
fscache.INFO [2025-06-28 16:02:41.930][private$cache$saveContents] Save 1 contents to /home/biocbuild/.cache/R/sched.
sched.DEBUG[2025-06-28 16:02:41.931][scheduler$sendRequest] Retrieved content saved to cache.
fscache.INFO [2025-06-28 16:02:41.932][cch$saveContents] Save 1 contents to /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
biodb.DEBUG[2025-06-28 16:02:41.933][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-06-28 16:02:41.934][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-06-28 16:02:41.935][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-06-28 16:02:41.937][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:02:41.938][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:02:41.939][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:02:41.943][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:02:41.944][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:02:41.944][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:02:41.945][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:02:41.947][ef$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:41.948][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:41.949][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:41.950][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:41.951][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:41.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:41.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:41.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:41.955][ef$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:02:41.956][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:02:41.957][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:41.958][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:41.959][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:02:41.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:02:41.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:41.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:41.962][ef$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:02:41.963][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:02:41.964][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:41.965][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:41.966][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:02:41.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:02:41.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:41.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:41.970][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:02:41.982][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:02:41.983][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:41.984][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:41.985][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:02:41.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:02:41.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:41.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:41.989][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:02:41.989][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:02:41.990][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:41.991][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:41.992][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:02:41.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:02:41.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:41.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:41.996][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:02:41.997][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:02:41.998][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:41.999][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:42.000][ef$get] Asked field names are: mass.
biodb.TRACE[2025-06-28 16:02:42.001][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:42.001][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:42.002][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:42.003][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-06-28 16:02:42.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:42.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:42.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:42.007][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:42.008][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:42.009][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:42.010][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:42.011][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:42.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:42.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:42.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:42.014][ef$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:02:42.015][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:02:42.016][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:42.017][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:42.018][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:02:42.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:02:42.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:42.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:42.022][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-06-28 16:02:42.023][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:02:42.024][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:42.025][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:42.026][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-06-28 16:02:42.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:02:42.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:42.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:42.029][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:02:42.030][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:02:42.031][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:42.032][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:42.033][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:02:42.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:02:42.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:42.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:42.037][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:42.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:42.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:42.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:42.040][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:42.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:42.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:42.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:42.044][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:42.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:42.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:42.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:42.047][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:42.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:42.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:42.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:42.051][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:42.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:42.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:42.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:42.054][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:42.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:42.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:42.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:42.058][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:42.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:42.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:42.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:42.062][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:42.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:42.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:42.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:42.065][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:42.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:42.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:42.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:42.069][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:42.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:42.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:42.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:02:42.072][self$createEntryFromContent] Accession numbers: 72338.
biodb.TRACE[2025-06-28 16:02:42.073][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:42.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:42.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:42.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:42.077][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:42.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:42.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:42.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:42.081][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:42.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:42.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:42.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:02:42.084][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:02:42.085][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:02:42.086][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:02:42.090][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:02:42.091][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:02:42.092][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:02:42.092][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-28 16:02:42.093][private$loadEntries] Creating entries from ids [1]: "77926".
biodb.DEBUG[2025-06-28 16:02:42.094][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-06-28 16:02:42.096][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
biodb.DEBUG[2025-06-28 16:02:42.097][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-06-28 16:02:42.098][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-06-28 16:02:42.099][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-06-28 16:02:42.100][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-06-28 16:02:42.102][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:02:42.103][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:02:42.104][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:02:42.108][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:02:42.109][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:02:42.109][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:02:42.110][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-06-28 16:02:42.111][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=77926".
fscache.INFO [2025-06-28 16:02:42.113][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
sched.DEBUG[2025-06-28 16:02:42.114][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-06-28 16:02:42.115][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-06-28 16:02:42.116][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=77926".
sched.TRACE[2025-06-28 16:02:42.471][try_get_rcurl_content] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=77926).
fscache.INFO [2025-06-28 16:02:42.815][private$cache$saveContents] Save 1 contents to /home/biocbuild/.cache/R/sched.
fscache.INFO [2025-06-28 16:02:42.820][private$cache$saveContents] Save 1 contents to /home/biocbuild/.cache/R/sched.
sched.DEBUG[2025-06-28 16:02:42.823][scheduler$sendRequest] Retrieved content saved to cache.
fscache.INFO [2025-06-28 16:02:42.826][cch$saveContents] Save 1 contents to /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
biodb.DEBUG[2025-06-28 16:02:42.828][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-06-28 16:02:42.831][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-06-28 16:02:42.834][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-06-28 16:02:42.837][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:02:42.839][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:02:42.841][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:02:42.851][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:02:42.853][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:02:42.855][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:02:42.857][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:02:42.861][ef$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:42.863][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:42.865][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:42.866][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:42.868][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:42.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:42.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:42.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:42.875][ef$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:02:42.876][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:02:42.878][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:42.879][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:42.881][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:02:42.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:02:42.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:42.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:42.886][ef$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:02:42.887][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:02:42.888][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:42.889][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:42.891][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:02:42.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:02:42.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:42.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:42.895][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:02:42.896][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:02:42.897][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:42.898][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:42.900][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:02:42.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:02:42.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:42.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:42.904][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:02:42.905][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:02:42.905][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:42.906][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:42.907][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:02:42.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:02:42.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:42.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:42.911][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:02:42.912][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:02:42.913][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:42.914][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:42.915][ef$get] Asked field names are: mass.
biodb.TRACE[2025-06-28 16:02:42.916][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:42.917][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:42.918][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:42.919][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-06-28 16:02:42.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:42.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:42.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:42.922][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:42.923][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:42.924][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:42.925][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:42.926][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:42.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:42.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:42.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:42.930][ef$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:02:42.931][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:02:42.932][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:42.933][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:42.934][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:02:42.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:02:42.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:42.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:42.938][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-06-28 16:02:42.939][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:02:42.939][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:42.940][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:42.941][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-06-28 16:02:42.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:02:42.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:42.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:42.945][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:02:42.946][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:02:42.947][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:42.948][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:42.949][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:02:42.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:02:42.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:42.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:42.953][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:42.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:42.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:42.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:42.956][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:42.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:42.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:42.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:42.960][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:42.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:42.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:42.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:42.988][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:42.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:42.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:42.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:42.992][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:42.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:42.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:42.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:42.996][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:42.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:42.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:42.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:42.999][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:43.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:43.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:43.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:43.003][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:43.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:43.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:43.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:43.007][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:43.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:43.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:43.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:43.010][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:43.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:43.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:43.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:02:43.014][self$createEntryFromContent] Accession numbers: 77926.
biodb.TRACE[2025-06-28 16:02:43.015][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:43.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:43.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:43.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:43.018][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:43.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:43.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:43.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:43.022][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:43.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:43.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:43.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:02:43.026][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:02:43.026][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:02:43.027][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:02:43.031][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:02:43.032][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:02:43.033][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:02:43.034][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-28 16:02:43.035][private$loadEntries] Creating entries from ids [1]: "82369".
biodb.DEBUG[2025-06-28 16:02:43.036][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-06-28 16:02:43.037][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
biodb.DEBUG[2025-06-28 16:02:43.038][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-06-28 16:02:43.039][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-06-28 16:02:43.040][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-06-28 16:02:43.041][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-06-28 16:02:43.043][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:02:43.044][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:02:43.045][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:02:43.049][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:02:43.050][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:02:43.050][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:02:43.051][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-06-28 16:02:43.052][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=82369".
fscache.INFO [2025-06-28 16:02:43.054][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
sched.DEBUG[2025-06-28 16:02:43.055][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-06-28 16:02:43.056][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-06-28 16:02:43.057][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=82369".
sched.TRACE[2025-06-28 16:02:43.420][try_get_rcurl_content] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=82369).
fscache.INFO [2025-06-28 16:02:43.769][private$cache$saveContents] Save 1 contents to /home/biocbuild/.cache/R/sched.
fscache.INFO [2025-06-28 16:02:43.774][private$cache$saveContents] Save 1 contents to /home/biocbuild/.cache/R/sched.
sched.DEBUG[2025-06-28 16:02:43.776][scheduler$sendRequest] Retrieved content saved to cache.
fscache.INFO [2025-06-28 16:02:43.779][cch$saveContents] Save 1 contents to /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
biodb.DEBUG[2025-06-28 16:02:43.782][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-06-28 16:02:43.785][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-06-28 16:02:43.787][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-06-28 16:02:43.791][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:02:43.793][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:02:43.795][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:02:43.804][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:02:43.806][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:02:43.808][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:02:43.810][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:02:43.814][ef$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:43.816][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:43.818][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:43.819][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:43.821][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:43.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:43.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:43.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:43.828][ef$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:02:43.829][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:02:43.831][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:43.832][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:43.834][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:02:43.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:02:43.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:43.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:43.839][ef$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:02:43.840][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:02:43.841][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:43.842][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:43.844][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:02:43.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:02:43.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:43.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:43.848][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:02:43.849][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:02:43.850][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:43.851][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:43.853][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:02:43.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:02:43.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:43.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:43.857][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:02:43.858][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:02:43.859][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:43.860][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:43.861][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:02:43.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:02:43.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:43.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:43.864][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:02:43.865][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:02:43.866][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:43.867][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:43.868][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:02:43.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:02:43.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:43.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:43.872][ef$get] Asked field names are: mass.
biodb.TRACE[2025-06-28 16:02:43.873][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:43.874][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:43.875][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:43.876][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-06-28 16:02:43.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:43.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:43.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:43.880][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:43.881][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:43.882][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:43.883][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:43.884][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:43.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:43.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:43.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:43.887][ef$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:02:43.888][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:02:43.889][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:43.890][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:43.891][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:02:43.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:02:43.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:43.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:43.895][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-06-28 16:02:43.896][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:02:43.897][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:43.898][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:43.899][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-06-28 16:02:43.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:02:43.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:43.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:43.903][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:02:43.904][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:02:43.905][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:43.906][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:43.907][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:02:43.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:02:43.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:43.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:43.910][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:43.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:43.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:43.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:43.914][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:43.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:43.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:43.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:43.918][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:43.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:43.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:43.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:43.921][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:43.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:43.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:43.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:43.925][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:43.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:43.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:43.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:43.929][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:43.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:43.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:43.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:43.933][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:43.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:43.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:43.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:43.936][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:43.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:43.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:43.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:43.940][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:43.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:43.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:43.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:43.944][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:43.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:43.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:43.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:02:43.947][self$createEntryFromContent] Accession numbers: 82369.
biodb.TRACE[2025-06-28 16:02:43.948][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:43.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:43.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:43.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:43.952][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:43.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:43.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:43.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:43.956][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:43.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:43.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:43.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:02:43.959][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:02:43.960][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:02:43.961][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:02:43.965][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:02:43.966][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:02:43.967][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:02:43.968][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-28 16:02:43.969][private$loadEntries] Creating entries from ids [1]: "90204".
biodb.DEBUG[2025-06-28 16:02:43.970][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-06-28 16:02:43.971][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
biodb.DEBUG[2025-06-28 16:02:43.972][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-06-28 16:02:43.973][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-06-28 16:02:43.974][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-06-28 16:02:43.975][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-06-28 16:02:43.977][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:02:43.978][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:02:43.979][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:02:43.983][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:02:43.984][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:02:43.985][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:02:43.986][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-06-28 16:02:43.987][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=90204".
fscache.INFO [2025-06-28 16:02:43.996][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
sched.DEBUG[2025-06-28 16:02:43.998][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-06-28 16:02:43.999][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-06-28 16:02:44.000][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=90204".
sched.TRACE[2025-06-28 16:02:44.360][try_get_rcurl_content] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=90204).
fscache.INFO [2025-06-28 16:02:44.706][private$cache$saveContents] Save 1 contents to /home/biocbuild/.cache/R/sched.
fscache.INFO [2025-06-28 16:02:44.711][private$cache$saveContents] Save 1 contents to /home/biocbuild/.cache/R/sched.
sched.DEBUG[2025-06-28 16:02:44.713][scheduler$sendRequest] Retrieved content saved to cache.
fscache.INFO [2025-06-28 16:02:44.716][cch$saveContents] Save 1 contents to /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
biodb.DEBUG[2025-06-28 16:02:44.719][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-06-28 16:02:44.722][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-06-28 16:02:44.724][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-06-28 16:02:44.727][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:02:44.729][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:02:44.731][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:02:44.741][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:02:44.743][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:02:44.745][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:02:44.747][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:02:44.751][ef$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:44.753][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:44.754][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:44.756][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:44.758][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:44.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:44.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:44.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:44.764][ef$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:02:44.766][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:02:44.767][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:44.768][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:44.770][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:02:44.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:02:44.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:44.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:44.775][ef$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:02:44.777][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:02:44.778][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:44.779][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:44.780][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:02:44.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:02:44.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:44.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:44.785][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:02:44.786][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:02:44.787][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:44.788][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:44.789][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:02:44.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:02:44.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:44.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:44.793][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:02:44.794][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:02:44.795][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:44.796][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:44.797][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:02:44.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:02:44.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:44.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:44.801][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:02:44.802][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:02:44.802][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:44.803][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:44.804][ef$get] Asked field names are: mass.
biodb.TRACE[2025-06-28 16:02:44.805][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:44.806][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:44.807][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:44.808][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-06-28 16:02:44.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:44.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:44.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:44.812][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:44.813][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:44.814][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:44.815][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:44.816][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:44.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:44.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:44.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:44.819][ef$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:02:44.820][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:02:44.821][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:44.822][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:44.823][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:02:44.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:02:44.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:44.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:44.827][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-06-28 16:02:44.828][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:02:44.829][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:44.829][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:44.831][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-06-28 16:02:44.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:02:44.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:44.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:44.834][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:02:44.835][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:02:44.836][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:44.837][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:44.838][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:02:44.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:02:44.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:44.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:44.842][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:44.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:44.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:44.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:44.845][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:44.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:44.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:44.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:44.849][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:44.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:44.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:44.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:44.853][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:44.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:44.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:44.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:44.856][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:44.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:44.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:44.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:44.860][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:44.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:44.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:44.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:44.863][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:44.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:44.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:44.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:44.867][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:44.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:44.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:44.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:44.871][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:44.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:44.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:44.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:44.874][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:44.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:44.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:44.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:02:44.878][self$createEntryFromContent] Accession numbers: 90204.
biodb.TRACE[2025-06-28 16:02:44.879][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:44.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:44.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:44.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:44.883][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:44.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:44.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:44.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:44.886][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:44.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:44.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:44.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:02:44.890][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:02:44.891][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:02:44.891][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:02:44.896][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:02:44.897][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:02:44.897][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:02:44.898][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-28 16:02:44.899][private$loadEntries] Creating entries from ids [1]: "132793".
biodb.DEBUG[2025-06-28 16:02:44.900][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-06-28 16:02:44.901][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
biodb.DEBUG[2025-06-28 16:02:44.902][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-06-28 16:02:44.903][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-06-28 16:02:44.904][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-06-28 16:02:44.905][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-06-28 16:02:44.908][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:02:44.908][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:02:44.909][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:02:44.913][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:02:44.914][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:02:44.915][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:02:44.916][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-06-28 16:02:44.917][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=132793".
fscache.INFO [2025-06-28 16:02:44.919][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
sched.DEBUG[2025-06-28 16:02:44.920][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-06-28 16:02:44.920][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-06-28 16:02:44.922][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=132793".
sched.TRACE[2025-06-28 16:02:45.278][try_get_rcurl_content] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=132793).
fscache.INFO [2025-06-28 16:02:45.627][private$cache$saveContents] Save 1 contents to /home/biocbuild/.cache/R/sched.
fscache.INFO [2025-06-28 16:02:45.629][private$cache$saveContents] Save 1 contents to /home/biocbuild/.cache/R/sched.
sched.DEBUG[2025-06-28 16:02:45.630][scheduler$sendRequest] Retrieved content saved to cache.
fscache.INFO [2025-06-28 16:02:45.631][cch$saveContents] Save 1 contents to /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
biodb.DEBUG[2025-06-28 16:02:45.632][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-06-28 16:02:45.633][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-06-28 16:02:45.634][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-06-28 16:02:45.636][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:02:45.637][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:02:45.638][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:02:45.642][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:02:45.643][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:02:45.643][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:02:45.644][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:02:45.646][ef$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:45.647][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:45.648][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:45.649][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:45.650][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:45.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:45.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:45.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:45.654][ef$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:02:45.655][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:02:45.656][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:45.656][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:45.658][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:02:45.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:02:45.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:45.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:45.661][ef$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:02:45.662][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:02:45.663][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:45.664][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:45.665][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:02:45.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:02:45.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:45.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:45.669][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:02:45.670][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:02:45.671][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:45.671][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:45.673][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:02:45.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:02:45.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:45.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:45.676][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:02:45.677][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:02:45.678][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:45.679][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:45.680][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:02:45.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:02:45.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:45.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:45.684][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:02:45.685][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:02:45.686][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:45.686][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:45.687][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:02:45.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:02:45.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:45.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:45.695][ef$get] Asked field names are: mass.
biodb.TRACE[2025-06-28 16:02:45.703][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:45.704][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:45.705][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:45.706][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-06-28 16:02:45.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:45.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:45.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:45.710][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:45.711][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:45.711][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:45.712][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:45.713][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:45.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:45.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:45.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:45.717][ef$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:02:45.718][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:02:45.719][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:45.720][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:45.721][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:02:45.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:02:45.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:45.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:45.725][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-06-28 16:02:45.725][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:02:45.726][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:45.727][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:45.728][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-06-28 16:02:45.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:02:45.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:45.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:45.732][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:02:45.733][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:02:45.734][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:45.735][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:45.736][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:02:45.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:02:45.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:45.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:45.739][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:45.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:45.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:45.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:45.743][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:45.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:45.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:45.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:45.746][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:45.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:45.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:45.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:45.750][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:45.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:45.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:45.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:45.754][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:45.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:45.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:45.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:45.757][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:45.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:45.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:45.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:45.761][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:45.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:45.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:45.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:45.764][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:45.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:45.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:45.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:45.768][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:45.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:45.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:45.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:45.772][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:45.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:45.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:45.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:02:45.775][self$createEntryFromContent] Accession numbers: 132793.
biodb.TRACE[2025-06-28 16:02:45.776][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:45.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:45.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:45.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:45.780][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:45.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:45.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:45.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:45.783][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:45.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:45.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:45.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:02:45.787][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-06-28 16:02:45.789][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:02:45.789][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:02:45.790][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:02:45.794][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:02:45.795][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:02:45.796][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:02:45.797][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:02:45.798][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:45.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:45.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:45.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:45.802][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:45.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:45.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:45.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:45.805][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:02:45.806][private$selectFields]
biodb.TRACE[2025-06-28 16:02:45.807][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-06-28 16:02:45.808][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-06-28 16:02:45.809][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:02:45.810][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:45.811][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:45.812][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:45.812][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:45.813][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:45.814][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:45.815][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:45.816][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:45.817][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:02:45.818][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:02:45.819][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:45.820][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:45.821][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:45.821][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:45.822][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-06-28 16:02:45.823][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:45.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:45.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:45.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:45.827][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:45.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:45.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:45.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:45.830][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:45.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:45.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:45.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:45.834][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [65530].
biodb.DEBUG[2025-06-28 16:02:45.835][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:02:45.836][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:02:45.837][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:02:45.841][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:02:45.842][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:02:45.843][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:02:45.844][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:02:45.845][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:45.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:45.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:45.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:45.848][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:45.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:45.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:45.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:45.852][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:02:45.853][private$selectFields]
biodb.TRACE[2025-06-28 16:02:45.854][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-06-28 16:02:45.855][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-06-28 16:02:45.856][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:02:45.856][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:45.857][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:45.858][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:45.859][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:45.860][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:45.861][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:45.862][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:45.863][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:45.864][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:02:45.864][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:02:45.865][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:45.866][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:45.867][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:45.868][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:45.869][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-06-28 16:02:45.870][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:45.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:45.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:45.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:45.874][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:45.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:45.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:45.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:45.877][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:45.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:45.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:45.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:45.881][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [90204].
biodb.DEBUG[2025-06-28 16:02:45.882][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:02:45.883][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:02:45.884][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:02:45.888][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:02:45.889][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:02:45.890][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:02:45.890][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:02:45.891][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:45.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:45.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:45.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:45.895][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:45.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:45.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:45.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:45.899][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:02:45.900][private$selectFields]
biodb.TRACE[2025-06-28 16:02:45.900][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-06-28 16:02:45.901][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-06-28 16:02:45.902][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:02:45.903][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:45.904][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:45.905][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:45.906][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:45.907][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:45.908][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:45.909][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:45.909][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:45.910][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:02:45.911][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:02:45.912][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:45.913][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:45.914][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:45.915][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:45.916][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-06-28 16:02:45.917][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:45.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:45.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:45.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:45.920][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:45.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:45.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:45.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:45.924][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:45.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:45.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:45.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:45.928][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [132793].
biodb.DEBUG[2025-06-28 16:02:45.929][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-06-28 16:02:45.929][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-06-28 16:02:45.931][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:02:45.932][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:02:45.933][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:02:45.937][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:02:45.938][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:02:45.939][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:02:45.940][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-06-28 16:02:45.942][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.1*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-06-28 16:02:45.944][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
sched.DEBUG[2025-06-28 16:02:45.945][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-06-28 16:02:45.946][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-06-28 16:02:45.948][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.1%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
sched.TRACE[2025-06-28 16:02:46.365][try_get_rcurl_content] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.1%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
fscache.INFO [2025-06-28 16:02:46.709][private$cache$saveContents] Save 1 contents to /home/biocbuild/.cache/R/sched.
fscache.INFO [2025-06-28 16:02:46.712][private$cache$saveContents] Save 1 contents to /home/biocbuild/.cache/R/sched.
sched.DEBUG[2025-06-28 16:02:46.713][self$getBiodb()$getRequestScheduler( ...] Retrieved content saved to cache.
biodb.DEBUG[2025-06-28 16:02:46.715][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:02:46.716][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:02:46.717][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:02:46.721][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:02:46.722][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:02:46.723][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:02:46.723][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-28 16:02:46.724][private$loadEntries] Creating entries from ids [1]: "131378".
biodb.DEBUG[2025-06-28 16:02:46.725][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-06-28 16:02:46.727][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
biodb.DEBUG[2025-06-28 16:02:46.728][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-06-28 16:02:46.729][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-06-28 16:02:46.729][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-06-28 16:02:46.730][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-06-28 16:02:46.733][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:02:46.734][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:02:46.734][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:02:46.738][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:02:46.739][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:02:46.740][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:02:46.741][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-06-28 16:02:46.742][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=131378".
fscache.INFO [2025-06-28 16:02:46.744][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
sched.DEBUG[2025-06-28 16:02:46.745][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-06-28 16:02:46.746][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-06-28 16:02:46.747][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=131378".
sched.TRACE[2025-06-28 16:02:47.093][try_get_rcurl_content] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=131378).
fscache.INFO [2025-06-28 16:02:47.432][private$cache$saveContents] Save 1 contents to /home/biocbuild/.cache/R/sched.
fscache.INFO [2025-06-28 16:02:47.434][private$cache$saveContents] Save 1 contents to /home/biocbuild/.cache/R/sched.
sched.DEBUG[2025-06-28 16:02:47.435][scheduler$sendRequest] Retrieved content saved to cache.
fscache.INFO [2025-06-28 16:02:47.437][cch$saveContents] Save 1 contents to /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
biodb.DEBUG[2025-06-28 16:02:47.438][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-06-28 16:02:47.439][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-06-28 16:02:47.440][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-06-28 16:02:47.441][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:02:47.442][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:02:47.443][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:02:47.447][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:02:47.448][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:02:47.449][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:02:47.450][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:02:47.454][ef$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:47.456][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:47.458][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:47.459][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:47.461][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:47.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:47.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:47.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:47.467][ef$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:02:47.468][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:02:47.469][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:47.471][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:47.472][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:02:47.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:02:47.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:47.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:47.477][ef$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:02:47.478][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:02:47.479][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:47.480][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:47.482][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:02:47.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:02:47.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:47.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:47.486][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:02:47.487][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:02:47.488][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:47.489][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:47.490][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:02:47.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:02:47.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:47.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:47.494][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:02:47.495][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:02:47.496][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:47.497][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:47.498][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:02:47.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:02:47.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:47.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:47.501][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:02:47.502][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:02:47.503][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:47.504][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:47.505][ef$get] Asked field names are: mass.
biodb.TRACE[2025-06-28 16:02:47.506][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:47.507][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:47.508][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:47.509][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-06-28 16:02:47.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:47.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:47.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:47.513][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:47.514][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:47.514][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:47.515][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:47.516][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:47.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:47.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:47.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:47.520][ef$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:02:47.521][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:02:47.522][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:47.523][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:47.524][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:02:47.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:02:47.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:47.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:47.528][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-06-28 16:02:47.529][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:02:47.530][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:47.530][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:47.531][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-06-28 16:02:47.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:02:47.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:47.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:47.535][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:02:47.536][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:02:47.537][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:47.538][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:47.539][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:02:47.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:02:47.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:47.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:47.543][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:47.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:47.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:47.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:47.546][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:47.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:47.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:47.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:47.550][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:47.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:47.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:47.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:47.553][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:47.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:47.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:47.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:47.557][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:47.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:47.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:47.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:47.561][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:47.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:47.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:47.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:47.564][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:47.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:47.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:47.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:47.568][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:47.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:47.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:47.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:47.572][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:47.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:47.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:47.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:47.575][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:47.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:47.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:47.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:02:47.579][self$createEntryFromContent] Accession numbers: 131378.
biodb.TRACE[2025-06-28 16:02:47.580][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:47.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:47.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:47.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:47.583][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:47.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:47.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:47.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:47.587][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:47.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:47.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:47.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:02:47.591][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:02:47.591][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:02:47.592][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:02:47.596][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:02:47.597][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:02:47.598][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:02:47.599][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-28 16:02:47.600][private$loadEntries] Creating entries from ids [1]: "214202".
biodb.DEBUG[2025-06-28 16:02:47.601][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-06-28 16:02:47.602][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
biodb.DEBUG[2025-06-28 16:02:47.603][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-06-28 16:02:47.604][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-06-28 16:02:47.605][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-06-28 16:02:47.606][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-06-28 16:02:47.608][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:02:47.609][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:02:47.610][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:02:47.614][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:02:47.615][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:02:47.616][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:02:47.616][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-06-28 16:02:47.617][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=214202".
fscache.INFO [2025-06-28 16:02:47.619][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
sched.DEBUG[2025-06-28 16:02:47.620][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-06-28 16:02:47.621][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-06-28 16:02:47.622][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=214202".
sched.TRACE[2025-06-28 16:02:47.986][try_get_rcurl_content] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=214202).
fscache.INFO [2025-06-28 16:02:48.328][private$cache$saveContents] Save 1 contents to /home/biocbuild/.cache/R/sched.
fscache.INFO [2025-06-28 16:02:48.333][private$cache$saveContents] Save 1 contents to /home/biocbuild/.cache/R/sched.
sched.DEBUG[2025-06-28 16:02:48.336][scheduler$sendRequest] Retrieved content saved to cache.
fscache.INFO [2025-06-28 16:02:48.339][cch$saveContents] Save 1 contents to /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
biodb.DEBUG[2025-06-28 16:02:48.342][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-06-28 16:02:48.345][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-06-28 16:02:48.347][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-06-28 16:02:48.351][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:02:48.353][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:02:48.355][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:02:48.365][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:02:48.367][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:02:48.369][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:02:48.371][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:02:48.375][ef$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:48.377][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:48.379][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:48.380][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:48.382][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:48.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:48.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:48.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:48.389][ef$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:02:48.390][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:02:48.392][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:48.411][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:48.413][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:02:48.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:02:48.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:48.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:48.417][ef$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:02:48.418][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:02:48.419][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:48.420][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:48.422][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:02:48.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:02:48.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:48.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:48.426][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:02:48.427][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:02:48.428][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:48.428][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:48.430][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:02:48.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:02:48.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:48.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:48.434][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:02:48.435][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:02:48.435][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:48.436][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:48.438][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:02:48.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:02:48.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:48.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:48.441][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:02:48.442][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:02:48.443][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:48.444][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:48.446][ef$get] Asked field names are: mass.
biodb.TRACE[2025-06-28 16:02:48.447][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:48.447][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:48.448][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:48.449][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-06-28 16:02:48.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:48.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:48.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:48.453][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:48.454][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:48.455][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:48.456][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:48.457][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:48.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:48.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:48.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:48.461][ef$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:02:48.462][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:02:48.463][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:48.464][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:48.465][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:02:48.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:02:48.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:48.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:48.469][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-06-28 16:02:48.470][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:02:48.471][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:48.472][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:48.473][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-06-28 16:02:48.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:02:48.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:48.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:48.477][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:02:48.478][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:02:48.479][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:48.480][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:48.481][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:02:48.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:02:48.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:48.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:48.485][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:48.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:48.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:48.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:48.489][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:48.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:48.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:48.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:48.493][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:48.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:48.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:48.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:48.497][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:48.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:48.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:48.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:48.501][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:48.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:48.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:48.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:48.504][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:48.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:48.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:48.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:48.508][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:48.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:48.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:48.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:48.512][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:48.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:48.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:48.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:48.516][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:48.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:48.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:48.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:48.520][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:48.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:48.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:48.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:02:48.524][self$createEntryFromContent] Accession numbers: 214202.
biodb.TRACE[2025-06-28 16:02:48.525][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:48.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:48.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:48.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:48.529][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:48.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:48.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:48.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:48.533][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:48.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:48.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:48.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
sched.DEBUG[2025-06-28 16:02:48.538][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.2*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-06-28 16:02:48.541][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
sched.DEBUG[2025-06-28 16:02:48.542][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-06-28 16:02:48.543][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-06-28 16:02:48.544][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.2%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
sched.TRACE[2025-06-28 16:02:48.884][try_get_rcurl_content] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.2%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
fscache.INFO [2025-06-28 16:02:49.225][private$cache$saveContents] Save 1 contents to /home/biocbuild/.cache/R/sched.
fscache.INFO [2025-06-28 16:02:49.230][private$cache$saveContents] Save 1 contents to /home/biocbuild/.cache/R/sched.
sched.DEBUG[2025-06-28 16:02:49.233][self$getBiodb()$getRequestScheduler( ...] Retrieved content saved to cache.
biodb.DEBUG[2025-06-28 16:02:49.238][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:02:49.239][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:02:49.241][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:02:49.250][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:02:49.252][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:02:49.254][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:02:49.256][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-28 16:02:49.258][private$loadEntries] Creating entries from ids [1]: "51836".
biodb.DEBUG[2025-06-28 16:02:49.260][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-06-28 16:02:49.263][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
biodb.DEBUG[2025-06-28 16:02:49.265][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-06-28 16:02:49.267][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-06-28 16:02:49.269][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-06-28 16:02:49.270][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-06-28 16:02:49.275][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:02:49.276][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:02:49.277][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:02:49.284][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:02:49.285][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:02:49.286][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:02:49.288][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-06-28 16:02:49.289][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=51836".
fscache.INFO [2025-06-28 16:02:49.292][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
sched.DEBUG[2025-06-28 16:02:49.293][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-06-28 16:02:49.294][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-06-28 16:02:49.296][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=51836".
sched.TRACE[2025-06-28 16:02:49.917][try_get_rcurl_content] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=51836).
fscache.INFO [2025-06-28 16:02:50.267][private$cache$saveContents] Save 1 contents to /home/biocbuild/.cache/R/sched.
fscache.INFO [2025-06-28 16:02:50.272][private$cache$saveContents] Save 1 contents to /home/biocbuild/.cache/R/sched.
sched.DEBUG[2025-06-28 16:02:50.275][scheduler$sendRequest] Retrieved content saved to cache.
fscache.INFO [2025-06-28 16:02:50.278][cch$saveContents] Save 1 contents to /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
biodb.DEBUG[2025-06-28 16:02:50.280][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-06-28 16:02:50.283][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-06-28 16:02:50.286][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-06-28 16:02:50.289][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:02:50.291][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:02:50.293][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:02:50.303][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:02:50.305][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:02:50.307][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:02:50.308][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:02:50.313][ef$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:50.314][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:50.316][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:50.318][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:50.319][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:50.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:50.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:50.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:50.326][ef$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:02:50.327][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:02:50.328][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:50.330][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:50.331][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:02:50.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:02:50.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:50.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:50.336][ef$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:02:50.338][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:02:50.339][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:50.340][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:50.341][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:02:50.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:02:50.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:50.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:50.346][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:02:50.347][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:02:50.348][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:50.349][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:50.350][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:02:50.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:02:50.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:50.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:50.354][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:02:50.355][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:02:50.356][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:50.357][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:50.358][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:02:50.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:02:50.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:50.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:50.362][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:02:50.363][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:02:50.364][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:50.364][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:50.365][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:02:50.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:02:50.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:50.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:50.369][ef$get] Asked field names are: mass.
biodb.TRACE[2025-06-28 16:02:50.370][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:50.371][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:50.372][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:50.373][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-06-28 16:02:50.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:50.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:50.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:50.377][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:50.378][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:50.379][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:50.379][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:50.381][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:50.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:50.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:50.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:50.384][ef$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:02:50.385][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:02:50.386][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:50.387][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:50.401][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:02:50.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:02:50.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:50.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:50.405][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-06-28 16:02:50.406][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:02:50.407][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:50.407][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:50.409][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-06-28 16:02:50.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:02:50.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:50.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:50.412][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:02:50.413][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:02:50.414][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:50.415][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:50.416][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:02:50.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:02:50.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:50.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:50.420][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:50.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:50.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:50.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:50.423][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:50.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:50.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:50.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:50.427][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:50.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:50.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:50.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:50.430][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:50.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:50.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:50.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:50.434][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:50.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:50.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:50.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:50.438][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:50.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:50.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:50.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:50.441][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:50.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:50.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:50.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:50.445][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:50.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:50.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:50.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:50.448][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:50.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:50.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:50.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:50.452][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:50.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:50.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:50.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:02:50.456][self$createEntryFromContent] Accession numbers: 51836.
biodb.TRACE[2025-06-28 16:02:50.457][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:50.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:50.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:50.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:50.460][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:50.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:50.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:50.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:50.464][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:50.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:50.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:50.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:02:50.467][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:02:50.468][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:02:50.469][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:02:50.473][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:02:50.474][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:02:50.475][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:02:50.476][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-28 16:02:50.477][private$loadEntries] Creating entries from ids [1]: "51837".
biodb.DEBUG[2025-06-28 16:02:50.478][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-06-28 16:02:50.479][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
biodb.DEBUG[2025-06-28 16:02:50.480][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-06-28 16:02:50.481][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-06-28 16:02:50.482][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-06-28 16:02:50.482][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-06-28 16:02:50.485][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:02:50.486][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:02:50.486][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:02:50.490][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:02:50.491][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:02:50.492][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:02:50.493][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-06-28 16:02:50.494][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=51837".
fscache.INFO [2025-06-28 16:02:50.496][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
sched.DEBUG[2025-06-28 16:02:50.497][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-06-28 16:02:50.498][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-06-28 16:02:50.499][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=51837".
sched.TRACE[2025-06-28 16:02:50.840][try_get_rcurl_content] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=51837).
fscache.INFO [2025-06-28 16:02:51.187][private$cache$saveContents] Save 1 contents to /home/biocbuild/.cache/R/sched.
fscache.INFO [2025-06-28 16:02:51.193][private$cache$saveContents] Save 1 contents to /home/biocbuild/.cache/R/sched.
sched.DEBUG[2025-06-28 16:02:51.195][scheduler$sendRequest] Retrieved content saved to cache.
fscache.INFO [2025-06-28 16:02:51.199][cch$saveContents] Save 1 contents to /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
biodb.DEBUG[2025-06-28 16:02:51.201][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-06-28 16:02:51.204][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-06-28 16:02:51.207][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-06-28 16:02:51.210][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:02:51.212][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:02:51.215][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:02:51.225][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:02:51.227][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:02:51.229][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:02:51.230][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:02:51.234][ef$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:51.236][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:51.238][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:51.239][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:51.241][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:51.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:51.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:51.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:51.247][ef$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:02:51.249][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:02:51.250][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:51.251][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:51.253][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:02:51.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:02:51.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:51.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:51.258][ef$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:02:51.259][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:02:51.261][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:51.262][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:51.263][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:02:51.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:02:51.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:51.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:51.268][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:02:51.269][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:02:51.270][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:51.271][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:51.272][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:02:51.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:02:51.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:51.275][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:51.276][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:02:51.277][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:02:51.278][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:51.279][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:51.280][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:02:51.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:02:51.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:51.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:51.284][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:02:51.285][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:02:51.286][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:51.287][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:51.288][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:02:51.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:02:51.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:51.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:51.292][ef$get] Asked field names are: mass.
biodb.TRACE[2025-06-28 16:02:51.294][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:51.294][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:51.295][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:51.297][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-06-28 16:02:51.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:51.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:51.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:51.301][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:51.302][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:51.303][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:51.303][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:51.305][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:51.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:51.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:51.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:51.309][ef$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:02:51.310][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:02:51.311][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:51.312][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:51.313][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:02:51.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:02:51.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:51.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:51.317][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-06-28 16:02:51.318][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:02:51.319][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:51.320][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:51.321][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-06-28 16:02:51.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:02:51.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:51.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:51.325][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:02:51.326][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:02:51.327][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:51.328][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:51.329][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:02:51.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:02:51.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:51.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:51.333][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:51.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:51.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:51.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:51.337][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:51.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:51.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:51.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:51.341][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:51.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:51.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:51.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:51.345][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:51.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:51.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:51.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:51.349][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:51.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:51.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:51.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:51.353][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:51.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:51.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:51.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:51.357][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:51.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:51.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:51.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:51.361][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:51.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:51.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:51.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:51.365][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:51.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:51.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:51.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:51.369][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:51.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:51.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:51.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:02:51.373][self$createEntryFromContent] Accession numbers: 51837.
biodb.TRACE[2025-06-28 16:02:51.374][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:51.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:51.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:51.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:51.378][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:51.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:51.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:51.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:51.381][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:51.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:51.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:51.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:02:51.397][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:02:51.398][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:02:51.399][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:02:51.403][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:02:51.404][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:02:51.405][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:02:51.406][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-28 16:02:51.407][private$loadEntries] Creating entries from ids [1]: "132205".
biodb.DEBUG[2025-06-28 16:02:51.408][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-06-28 16:02:51.410][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
biodb.DEBUG[2025-06-28 16:02:51.411][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-06-28 16:02:51.412][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-06-28 16:02:51.413][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-06-28 16:02:51.413][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-06-28 16:02:51.416][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:02:51.417][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:02:51.418][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:02:51.422][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:02:51.423][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:02:51.424][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:02:51.425][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-06-28 16:02:51.426][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=132205".
fscache.INFO [2025-06-28 16:02:51.428][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
sched.DEBUG[2025-06-28 16:02:51.429][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-06-28 16:02:51.430][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-06-28 16:02:51.431][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=132205".
sched.TRACE[2025-06-28 16:02:51.771][try_get_rcurl_content] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=132205).
fscache.INFO [2025-06-28 16:02:52.115][private$cache$saveContents] Save 1 contents to /home/biocbuild/.cache/R/sched.
fscache.INFO [2025-06-28 16:02:52.120][private$cache$saveContents] Save 1 contents to /home/biocbuild/.cache/R/sched.
sched.DEBUG[2025-06-28 16:02:52.123][scheduler$sendRequest] Retrieved content saved to cache.
fscache.INFO [2025-06-28 16:02:52.126][cch$saveContents] Save 1 contents to /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
biodb.DEBUG[2025-06-28 16:02:52.129][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-06-28 16:02:52.131][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-06-28 16:02:52.134][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-06-28 16:02:52.137][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:02:52.139][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:02:52.141][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:02:52.151][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:02:52.153][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:02:52.155][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:02:52.156][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:02:52.161][ef$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:52.163][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:52.164][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:52.166][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:52.167][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:52.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:52.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:52.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:52.173][ef$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:02:52.175][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:02:52.176][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:52.177][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:52.179][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:02:52.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:02:52.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:52.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:52.184][ef$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:02:52.185][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:02:52.186][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:52.187][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:52.188][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:02:52.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:02:52.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:52.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:52.193][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:02:52.194][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:02:52.195][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:52.196][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:52.197][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:02:52.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:02:52.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:52.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:52.201][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:02:52.202][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:02:52.203][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:52.204][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:52.205][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:02:52.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:02:52.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:52.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:52.208][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:02:52.209][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:02:52.210][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:52.211][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:52.212][ef$get] Asked field names are: mass.
biodb.TRACE[2025-06-28 16:02:52.213][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:52.214][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:52.215][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:52.216][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-06-28 16:02:52.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:52.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:52.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:52.220][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:52.221][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:52.222][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:52.223][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:52.224][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:52.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:52.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:52.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:52.227][ef$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:02:52.228][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:02:52.229][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:52.230][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:52.231][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:02:52.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:02:52.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:52.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:52.235][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-06-28 16:02:52.236][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:02:52.237][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:52.238][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:52.239][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-06-28 16:02:52.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:02:52.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:52.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:52.243][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:02:52.244][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:02:52.245][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:52.245][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:52.246][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:02:52.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:02:52.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:52.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:52.250][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:52.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:52.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:52.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:52.254][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:52.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:52.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:52.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:52.258][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:52.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:52.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:52.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:52.261][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:52.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:52.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:52.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:52.265][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:52.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:52.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:52.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:52.268][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:52.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:52.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:52.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:52.272][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:52.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:52.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:52.275][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:52.276][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:52.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:52.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:52.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:52.279][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:52.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:52.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:52.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:52.283][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:52.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:52.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:52.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:02:52.287][self$createEntryFromContent] Accession numbers: 132205.
biodb.TRACE[2025-06-28 16:02:52.288][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:52.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:52.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:52.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:52.291][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:52.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:52.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:52.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:52.295][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:52.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:52.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:52.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:02:52.299][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-06-28 16:02:52.300][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:02:52.301][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:02:52.302][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:02:52.306][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:02:52.307][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:02:52.308][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:02:52.309][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:02:52.310][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:52.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:52.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:52.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:52.313][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:52.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:52.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:52.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:52.317][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:02:52.318][private$selectFields]
biodb.TRACE[2025-06-28 16:02:52.319][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-06-28 16:02:52.320][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-06-28 16:02:52.320][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:02:52.321][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:52.322][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:52.323][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:52.324][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:52.325][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:52.326][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:52.327][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:52.328][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:52.329][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:02:52.329][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:02:52.330][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:52.331][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:52.332][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:52.333][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:52.334][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-06-28 16:02:52.335][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:52.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:52.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:52.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:52.338][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:52.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:52.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:52.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:52.342][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:52.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:52.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:52.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:52.346][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [51836].
biodb.DEBUG[2025-06-28 16:02:52.347][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:02:52.348][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:02:52.349][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:02:52.353][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:02:52.354][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:02:52.355][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:02:52.355][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:02:52.356][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:52.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:52.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:52.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:52.360][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:52.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:52.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:52.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:52.369][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:02:52.374][private$selectFields]
biodb.TRACE[2025-06-28 16:02:52.375][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-06-28 16:02:52.376][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-06-28 16:02:52.377][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:02:52.378][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:52.379][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:52.380][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:52.380][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:52.381][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:52.382][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:52.383][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:52.384][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:52.385][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:02:52.386][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:02:52.387][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:52.388][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:52.389][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:52.389][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:52.390][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-06-28 16:02:52.391][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:52.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:52.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:52.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:52.395][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:52.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:52.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:52.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:52.398][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:52.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:52.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:52.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:52.402][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [51837].
biodb.DEBUG[2025-06-28 16:02:52.403][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:02:52.404][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:02:52.405][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:02:52.409][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:02:52.410][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:02:52.410][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:02:52.411][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:02:52.412][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:52.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:52.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:52.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:52.416][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:52.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:52.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:52.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:52.419][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:02:52.420][private$selectFields]
biodb.TRACE[2025-06-28 16:02:52.421][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-06-28 16:02:52.422][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-06-28 16:02:52.423][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:02:52.424][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:52.425][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:52.425][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:52.426][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:52.427][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:52.428][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:52.429][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:52.430][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:52.431][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:02:52.432][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:02:52.432][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:52.433][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:52.434][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:52.435][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:52.436][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-06-28 16:02:52.437][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:52.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:52.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:52.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:52.440][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:52.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:52.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:52.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:52.444][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:52.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:52.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:52.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:52.448][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [132205].
biodb.DEBUG[2025-06-28 16:02:52.449][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-06-28 16:02:52.450][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-06-28 16:02:52.466][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:02:52.467][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:02:52.468][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:02:52.472][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:02:52.473][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:02:52.474][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:02:52.474][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-06-28 16:02:52.477][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-06-28 16:02:52.479][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-06-28 16:02:52.481][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/8fc54eee7e982ce554bee8000d8203f7.content.
sched.DEBUG[2025-06-28 16:02:52.482][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-06-28 16:02:52.484][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:02:52.485][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:02:52.486][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:02:52.489][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:02:52.490][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:02:52.491][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:02:52.492][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:02:52.493][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:52.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:52.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:52.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:52.497][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:52.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:52.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:52.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:52.500][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:52.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:52.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:52.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
sched.DEBUG[2025-06-28 16:02:52.505][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-06-28 16:02:52.507][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-06-28 16:02:52.509][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/6def615835d7c1dfccd5a5f135bd2f9d.content.
sched.DEBUG[2025-06-28 16:02:52.510][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-06-28 16:02:52.512][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:02:52.512][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:02:52.513][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:02:52.517][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:02:52.518][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:02:52.519][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:02:52.520][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:02:52.521][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:52.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:52.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:52.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:52.524][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:52.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:52.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:52.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:52.528][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:52.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:52.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:52.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:02:52.532][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:02:52.533][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:02:52.533][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:02:52.537][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:02:52.538][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:02:52.539][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:02:52.540][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:02:52.541][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:52.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:52.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:52.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:52.545][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:52.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:52.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:52.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:52.548][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:52.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:52.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:52.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:02:52.552][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-06-28 16:02:52.553][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:02:52.554][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:02:52.555][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:02:52.559][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:02:52.560][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:02:52.561][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:02:52.561][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:02:52.563][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:52.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:52.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:52.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:52.566][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:52.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:52.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:52.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:52.570][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:02:52.571][private$selectFields]
biodb.TRACE[2025-06-28 16:02:52.571][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-06-28 16:02:52.572][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-06-28 16:02:52.573][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:02:52.574][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:52.575][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:52.576][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:52.577][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:52.578][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:52.579][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:52.580][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:52.580][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:52.581][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:02:52.582][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:02:52.583][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:52.584][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:52.585][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:52.586][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:52.587][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-06-28 16:02:52.588][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:52.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:52.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:52.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:52.591][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:52.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:52.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:52.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:52.595][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:52.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:52.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:52.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:52.599][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [192288].
biodb.DEBUG[2025-06-28 16:02:52.600][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:02:52.600][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:02:52.601][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:02:52.605][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:02:52.606][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:02:52.607][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:02:52.608][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:02:52.609][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:52.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:52.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:52.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:52.612][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:52.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:52.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:52.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:52.616][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:02:52.617][private$selectFields]
biodb.TRACE[2025-06-28 16:02:52.618][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-06-28 16:02:52.619][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-06-28 16:02:52.620][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:02:52.625][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:52.626][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:52.627][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:52.628][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:52.629][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:52.630][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:52.631][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:52.632][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:52.633][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:02:52.634][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:02:52.634][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:52.635][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:52.636][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:52.637][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:52.638][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-06-28 16:02:52.639][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:52.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:52.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:52.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:52.643][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:52.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:52.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:52.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:52.646][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:52.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:52.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:52.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:52.650][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2025-06-28 16:02:52.651][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:02:52.652][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:02:52.652][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:02:52.656][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:02:52.657][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:02:52.658][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:02:52.659][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:02:52.660][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:52.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:52.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:52.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:52.664][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:52.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:52.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:52.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:52.667][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:02:52.668][private$selectFields]
biodb.TRACE[2025-06-28 16:02:52.669][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-06-28 16:02:52.670][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-06-28 16:02:52.670][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:02:52.671][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:52.672][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:52.673][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:52.674][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:52.675][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:52.676][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:52.677][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:52.678][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:52.678][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:02:52.679][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:02:52.680][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:52.681][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:52.682][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:52.683][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:52.684][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-06-28 16:02:52.685][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:52.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:52.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:52.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:52.688][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:52.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:52.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:52.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:52.692][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:52.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:52.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:52.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:52.696][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [209892].
biodb.DEBUG[2025-06-28 16:02:52.697][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-06-28 16:02:52.697][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-06-28 16:02:52.699][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:02:52.700][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:02:52.701][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:02:52.705][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:02:52.706][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:02:52.707][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:02:52.707][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-06-28 16:02:52.710][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-06-28 16:02:52.712][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-06-28 16:02:52.714][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/013adb879cee6d4257067df9ba0a8c7b.content.
sched.DEBUG[2025-06-28 16:02:52.715][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-06-28 16:02:52.717][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:02:52.718][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:02:52.719][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:02:52.722][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:02:52.723][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:02:52.724][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:02:52.725][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:02:52.726][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:52.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:52.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:52.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:52.730][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:52.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:52.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:52.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:52.733][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:52.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:52.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:52.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:02:52.737][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:02:52.738][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:02:52.739][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:02:52.743][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:02:52.743][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:02:52.744][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:02:52.745][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:02:52.746][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:52.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:52.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:52.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:52.750][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:52.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:52.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:52.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:52.753][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:52.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:52.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:52.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
sched.DEBUG[2025-06-28 16:02:52.758][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.63*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-06-28 16:02:52.760][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-06-28 16:02:52.763][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/d37a10a1f6afae785eb4d1943c254641.content.
sched.DEBUG[2025-06-28 16:02:52.764][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-06-28 16:02:52.766][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:02:52.767][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:02:52.768][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:02:52.772][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:02:52.773][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:02:52.773][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:02:52.774][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:02:52.775][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:52.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:52.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:52.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:52.779][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:52.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:52.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:52.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:52.783][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:52.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:52.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:52.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:02:52.786][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:02:52.787][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:02:52.788][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:02:52.792][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:02:52.793][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:02:52.794][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:02:52.794][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:02:52.795][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:52.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:52.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:52.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:52.799][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:52.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:52.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:52.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:52.803][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:52.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:52.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:52.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:02:52.806][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:02:52.807][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:02:52.808][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:02:52.812][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:02:52.813][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:02:52.814][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:02:52.814][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:02:52.815][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:52.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:52.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:52.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:52.819][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:52.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:52.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:52.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:52.823][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:52.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:52.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:52.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:02:52.826][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-06-28 16:02:52.828][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:02:52.829][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:02:52.830][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:02:52.833][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:02:52.834][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:02:52.835][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:02:52.836][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:02:52.837][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:52.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:52.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:52.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:52.841][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:52.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:52.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:52.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:52.844][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:02:52.845][private$selectFields]
biodb.TRACE[2025-06-28 16:02:52.846][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-06-28 16:02:52.847][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-06-28 16:02:52.848][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:02:52.849][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:52.850][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:52.850][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:52.851][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:52.852][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:52.853][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:52.854][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:52.855][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:52.856][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:02:52.857][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:02:52.858][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:52.859][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:52.859][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:52.860][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:52.861][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-06-28 16:02:52.862][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:52.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:52.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:52.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:52.866][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:52.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:52.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:52.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:52.869][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:52.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:52.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:52.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:52.878][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2025-06-28 16:02:52.879][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:02:52.880][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:02:52.881][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:02:52.885][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:02:52.886][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:02:52.887][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:02:52.887][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:02:52.888][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:52.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:52.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:52.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:52.892][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:52.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:52.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:52.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:52.896][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:02:52.896][private$selectFields]
biodb.TRACE[2025-06-28 16:02:52.897][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-06-28 16:02:52.898][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-06-28 16:02:52.899][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:02:52.900][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:52.901][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:52.902][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:52.902][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:52.903][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:52.904][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:52.905][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:52.906][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:52.907][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:02:52.908][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:02:52.909][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:52.910][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:52.910][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:52.911][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:52.912][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-06-28 16:02:52.913][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:52.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:52.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:52.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:52.917][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:52.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:52.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:52.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:52.920][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:52.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:52.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:52.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:52.924][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [16587].
biodb.DEBUG[2025-06-28 16:02:52.925][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:02:52.926][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:02:52.927][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:02:52.931][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:02:52.931][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:02:52.932][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:02:52.933][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:02:52.934][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:52.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:52.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:52.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:52.938][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:52.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:52.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:52.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:52.941][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:02:52.942][private$selectFields]
biodb.TRACE[2025-06-28 16:02:52.943][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-06-28 16:02:52.944][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-06-28 16:02:52.945][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:02:52.946][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:52.947][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:52.947][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:52.948][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:52.949][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:52.950][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:52.951][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:52.952][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:52.953][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:02:52.954][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:02:52.954][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:52.955][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:52.956][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:52.957][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:52.958][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-06-28 16:02:52.959][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:52.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:52.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:52.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:52.962][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:52.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:52.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:52.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:52.966][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:52.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:52.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:52.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:52.970][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [19804].
biodb.DEBUG[2025-06-28 16:02:52.971][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-06-28 16:02:52.972][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-06-28 16:02:52.974][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:02:52.974][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:02:52.975][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:02:52.979][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:02:52.980][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:02:52.981][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:02:52.982][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-06-28 16:02:52.984][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-06-28 16:02:52.987][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-06-28 16:02:52.989][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/618204bc3e9a685033db1d9be9d78d44.content.
sched.DEBUG[2025-06-28 16:02:52.990][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-06-28 16:02:52.992][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:02:52.993][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:02:52.994][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:02:52.998][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:02:52.999][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:02:53.000][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:02:53.000][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:02:53.001][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:53.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:53.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:53.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:53.005][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:53.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:53.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:53.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:53.009][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:53.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:53.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:53.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:02:53.012][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:02:53.013][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:02:53.014][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:02:53.018][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:02:53.019][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:02:53.020][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:02:53.020][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:02:53.021][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:53.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:53.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:53.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:53.025][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:53.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:53.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:53.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:53.029][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:53.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:53.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:53.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:02:53.032][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:02:53.033][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:02:53.034][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:02:53.038][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:02:53.039][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:02:53.040][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:02:53.040][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:02:53.041][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:53.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:53.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:53.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:53.045][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:53.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:53.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:53.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:53.049][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:53.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:53.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:53.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:02:53.052][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:02:53.053][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:02:53.054][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:02:53.058][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:02:53.059][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:02:53.060][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:02:53.060][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:02:53.061][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:53.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:53.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:53.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:53.065][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:53.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:53.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:53.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:53.069][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:53.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:53.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:53.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:02:53.072][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:02:53.073][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:02:53.074][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:02:53.078][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:02:53.079][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:02:53.079][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:02:53.080][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:02:53.081][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:53.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:53.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:53.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:53.085][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:53.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:53.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:53.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:53.089][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:53.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:53.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:53.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:02:53.092][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:02:53.093][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:02:53.094][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:02:53.098][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:02:53.099][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:02:53.099][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:02:53.100][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:02:53.101][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:53.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:53.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:53.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:53.105][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:53.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:53.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:53.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:53.109][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:53.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:53.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:53.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:02:53.112][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:02:53.113][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:02:53.114][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:02:53.118][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:02:53.119][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:02:53.119][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:02:53.120][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:02:53.121][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:53.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:53.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:53.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:53.129][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:53.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:53.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:53.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:53.133][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:53.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:53.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:53.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:02:53.137][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:02:53.138][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:02:53.139][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:02:53.143][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:02:53.143][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:02:53.144][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:02:53.145][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:02:53.146][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:53.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:53.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:53.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:53.150][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:53.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:53.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:53.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:53.153][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:53.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:53.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:53.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
sched.DEBUG[2025-06-28 16:02:53.157][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-06-28 16:02:53.160][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-06-28 16:02:53.162][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/e0540b0a9d3ba75ce1522ce23f76319e.content.
sched.DEBUG[2025-06-28 16:02:53.162][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-06-28 16:02:53.164][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:02:53.165][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:02:53.166][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:02:53.170][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:02:53.171][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:02:53.172][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:02:53.173][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:02:53.174][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:53.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:53.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:53.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:53.177][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:53.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:53.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:53.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:53.181][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:53.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:53.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:53.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:02:53.184][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:02:53.185][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:02:53.186][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:02:53.190][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:02:53.191][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:02:53.192][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:02:53.192][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:02:53.193][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:53.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:53.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:53.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:53.197][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:53.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:53.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:53.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:53.201][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:53.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:53.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:53.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:02:53.204][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:02:53.205][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:02:53.206][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:02:53.210][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:02:53.211][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:02:53.212][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:02:53.212][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:02:53.213][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:53.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:53.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:53.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:53.217][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:53.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:53.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:53.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:53.221][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:53.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:53.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:53.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:02:53.224][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-06-28 16:02:53.226][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:02:53.227][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:02:53.228][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:02:53.232][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:02:53.232][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:02:53.233][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:02:53.234][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:02:53.235][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:53.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:53.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:53.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:53.239][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:53.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:53.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:53.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:53.242][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:02:53.243][private$selectFields]
biodb.TRACE[2025-06-28 16:02:53.244][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-06-28 16:02:53.245][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-06-28 16:02:53.246][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:02:53.247][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:53.248][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:53.249][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:53.250][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:53.251][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:53.251][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:53.252][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:53.253][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:53.254][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:02:53.255][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:02:53.256][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:53.257][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:53.258][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:53.259][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:53.259][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-06-28 16:02:53.260][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:53.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:53.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:53.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:53.264][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:53.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:53.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:53.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:53.268][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:53.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:53.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:53.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:53.272][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [7799].
biodb.DEBUG[2025-06-28 16:02:53.273][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:02:53.273][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:02:53.274][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:02:53.278][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:02:53.279][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:02:53.280][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:02:53.281][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:02:53.282][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:53.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:53.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:53.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:53.285][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:53.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:53.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:53.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:53.289][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:02:53.290][private$selectFields]
biodb.TRACE[2025-06-28 16:02:53.291][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-06-28 16:02:53.292][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-06-28 16:02:53.293][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:02:53.293][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:53.294][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:53.295][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:53.296][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:53.297][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:53.298][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:53.299][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:53.300][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:53.301][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:02:53.302][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:02:53.302][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:53.303][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:53.304][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:53.305][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:53.306][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-06-28 16:02:53.307][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:53.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:53.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:53.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:53.311][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:53.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:53.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:53.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:53.314][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:53.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:53.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:53.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:53.318][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [71954].
biodb.DEBUG[2025-06-28 16:02:53.319][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:02:53.320][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:02:53.321][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:02:53.325][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:02:53.326][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:02:53.326][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:02:53.327][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:02:53.328][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:53.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:53.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:53.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:53.332][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:53.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:53.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:53.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:53.336][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:02:53.336][private$selectFields]
biodb.TRACE[2025-06-28 16:02:53.337][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-06-28 16:02:53.338][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-06-28 16:02:53.339][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:02:53.340][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:53.341][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:53.342][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:53.343][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:53.344][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:53.345][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:53.345][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:53.346][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:53.347][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:02:53.348][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:02:53.349][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:53.350][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:53.351][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:53.352][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:53.353][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-06-28 16:02:53.353][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:53.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:53.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:53.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:53.357][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:53.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:53.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:53.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:53.361][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:53.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:53.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:53.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:53.365][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [197612].
biodb.DEBUG[2025-06-28 16:02:53.365][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-06-28 16:02:53.366][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-06-28 16:02:53.388][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:02:53.389][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:02:53.390][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:02:53.393][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:02:53.394][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:02:53.395][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:02:53.396][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-06-28 16:02:53.398][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.7*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-06-28 16:02:53.400][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
sched.DEBUG[2025-06-28 16:02:53.401][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-06-28 16:02:53.402][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-06-28 16:02:53.404][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.7%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
sched.TRACE[2025-06-28 16:02:53.743][try_get_rcurl_content] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.7%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
fscache.INFO [2025-06-28 16:02:54.087][private$cache$saveContents] Save 1 contents to /home/biocbuild/.cache/R/sched.
fscache.INFO [2025-06-28 16:02:54.093][private$cache$saveContents] Save 1 contents to /home/biocbuild/.cache/R/sched.
sched.DEBUG[2025-06-28 16:02:54.095][self$getBiodb()$getRequestScheduler( ...] Retrieved content saved to cache.
biodb.DEBUG[2025-06-28 16:02:54.100][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:02:54.102][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:02:54.104][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:02:54.114][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:02:54.116][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:02:54.118][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:02:54.120][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:02:54.122][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:54.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:54.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:54.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:54.131][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:54.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:54.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:54.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:54.138][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:54.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:54.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:54.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:02:54.144][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:02:54.146][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:02:54.147][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:02:54.153][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:02:54.154][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:02:54.155][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:02:54.156][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:02:54.158][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:54.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:54.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:54.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:54.162][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:54.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:54.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:54.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:54.167][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:54.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:54.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:54.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:02:54.171][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:02:54.172][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:02:54.172][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:02:54.177][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:02:54.178][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:02:54.178][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:02:54.179][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-28 16:02:54.180][private$loadEntries] Creating entries from ids [1]: "28243".
biodb.DEBUG[2025-06-28 16:02:54.181][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-06-28 16:02:54.183][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
biodb.DEBUG[2025-06-28 16:02:54.183][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-06-28 16:02:54.184][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-06-28 16:02:54.185][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-06-28 16:02:54.186][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-06-28 16:02:54.189][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:02:54.189][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:02:54.190][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:02:54.194][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:02:54.195][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:02:54.196][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:02:54.197][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-06-28 16:02:54.198][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=28243".
fscache.INFO [2025-06-28 16:02:54.200][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
sched.DEBUG[2025-06-28 16:02:54.201][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-06-28 16:02:54.201][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-06-28 16:02:54.203][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=28243".
sched.TRACE[2025-06-28 16:02:54.543][try_get_rcurl_content] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=28243).
fscache.INFO [2025-06-28 16:02:54.895][private$cache$saveContents] Save 1 contents to /home/biocbuild/.cache/R/sched.
fscache.INFO [2025-06-28 16:02:54.900][private$cache$saveContents] Save 1 contents to /home/biocbuild/.cache/R/sched.
sched.DEBUG[2025-06-28 16:02:54.902][scheduler$sendRequest] Retrieved content saved to cache.
fscache.INFO [2025-06-28 16:02:54.905][cch$saveContents] Save 1 contents to /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
biodb.DEBUG[2025-06-28 16:02:54.908][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-06-28 16:02:54.910][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-06-28 16:02:54.913][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-06-28 16:02:54.916][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:02:54.918][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:02:54.920][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:02:54.930][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:02:54.932][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:02:54.934][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:02:54.936][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:02:54.940][ef$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:54.942][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:54.943][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:54.945][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:54.947][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:54.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:54.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:54.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:54.953][ef$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:02:54.955][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:02:54.956][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:54.958][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:54.959][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:02:54.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:02:54.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:54.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:54.964][ef$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:02:54.966][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:02:54.967][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:54.968][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:54.969][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:02:54.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:02:54.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:54.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:54.974][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:02:54.975][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:02:54.976][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:54.977][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:54.978][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:02:54.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:02:54.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:54.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:54.982][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:02:54.983][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:02:54.984][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:54.985][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:54.986][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:02:54.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:02:54.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:54.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:54.990][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:02:54.991][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:02:54.992][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:54.993][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:54.994][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:02:54.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:02:54.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:54.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:54.997][ef$get] Asked field names are: mass.
biodb.TRACE[2025-06-28 16:02:54.998][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:54.999][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:55.000][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:55.001][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-06-28 16:02:55.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:55.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:55.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:55.005][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:55.006][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:55.007][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:55.007][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:55.009][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:55.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:55.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:55.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:55.012][ef$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:02:55.013][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:02:55.014][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:55.015][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:55.016][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:02:55.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:02:55.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:55.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:55.020][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-06-28 16:02:55.021][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:02:55.022][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:55.023][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:55.024][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-06-28 16:02:55.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:02:55.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:55.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:55.027][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:02:55.028][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:02:55.029][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:55.030][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:55.031][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:02:55.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:02:55.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:55.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:55.035][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:55.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:55.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:55.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:55.038][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:55.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:55.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:55.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:55.042][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:55.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:55.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:55.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:55.046][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:55.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:55.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:55.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:55.049][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:55.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:55.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:55.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:55.053][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:55.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:55.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:55.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:55.056][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:55.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:55.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:55.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:55.060][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:55.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:55.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:55.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:55.064][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:55.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:55.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:55.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:55.067][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:55.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:55.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:55.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:02:55.071][self$createEntryFromContent] Accession numbers: 28243.
biodb.TRACE[2025-06-28 16:02:55.072][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:55.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:55.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:55.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:55.087][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:55.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:55.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:55.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:55.090][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:55.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:55.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:55.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:02:55.094][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:02:55.095][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:02:55.096][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:02:55.100][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:02:55.101][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:02:55.102][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:02:55.102][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:02:55.103][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:55.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:55.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:55.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:55.107][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:55.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:55.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:55.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:55.111][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:55.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:55.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:55.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:02:55.114][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:02:55.115][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:02:55.116][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:02:55.120][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:02:55.121][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:02:55.121][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:02:55.122][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-28 16:02:55.123][private$loadEntries] Creating entries from ids [1]: "70786".
biodb.DEBUG[2025-06-28 16:02:55.124][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-06-28 16:02:55.125][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
biodb.DEBUG[2025-06-28 16:02:55.126][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-06-28 16:02:55.127][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-06-28 16:02:55.128][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-06-28 16:02:55.129][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-06-28 16:02:55.131][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:02:55.132][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:02:55.133][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:02:55.137][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:02:55.138][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:02:55.138][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:02:55.139][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-06-28 16:02:55.140][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=70786".
fscache.INFO [2025-06-28 16:02:55.142][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
sched.DEBUG[2025-06-28 16:02:55.143][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-06-28 16:02:55.144][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-06-28 16:02:55.145][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=70786".
sched.TRACE[2025-06-28 16:02:55.484][try_get_rcurl_content] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=70786).
fscache.INFO [2025-06-28 16:02:55.830][private$cache$saveContents] Save 1 contents to /home/biocbuild/.cache/R/sched.
fscache.INFO [2025-06-28 16:02:55.833][private$cache$saveContents] Save 1 contents to /home/biocbuild/.cache/R/sched.
sched.DEBUG[2025-06-28 16:02:55.835][scheduler$sendRequest] Retrieved content saved to cache.
fscache.INFO [2025-06-28 16:02:55.837][cch$saveContents] Save 1 contents to /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
biodb.DEBUG[2025-06-28 16:02:55.839][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-06-28 16:02:55.841][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-06-28 16:02:55.843][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-06-28 16:02:55.846][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:02:55.847][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:02:55.848][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:02:55.856][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:02:55.857][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:02:55.858][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:02:55.860][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:02:55.863][ef$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:55.865][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:55.866][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:55.868][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:55.870][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:55.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:55.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:55.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:55.876][ef$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:02:55.878][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:02:55.879][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:55.880][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:55.882][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:02:55.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:02:55.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:55.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:55.889][ef$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:02:55.890][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:02:55.892][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:55.893][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:55.895][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:02:55.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:02:55.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:55.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:55.901][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:02:55.903][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:02:55.904][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:55.906][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:55.908][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:02:55.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:02:55.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:55.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:55.914][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:02:55.916][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:02:55.917][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:55.918][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:55.920][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:02:55.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:02:55.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:55.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:55.924][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:02:55.925][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:02:55.926][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:55.927][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:55.928][ef$get] Asked field names are: mass.
biodb.TRACE[2025-06-28 16:02:55.929][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:55.930][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:55.931][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:55.932][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-06-28 16:02:55.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:55.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:55.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:55.936][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:55.938][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:55.938][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:55.939][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:55.941][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:55.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:55.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:55.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:55.945][ef$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:02:55.946][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:02:55.946][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:55.947][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:55.949][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:02:55.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:02:55.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:55.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:55.953][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-06-28 16:02:55.954][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:02:55.955][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:55.956][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:55.957][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-06-28 16:02:55.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:02:55.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:55.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:55.961][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:02:55.962][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:02:55.963][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:55.964][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:55.965][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:02:55.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:02:55.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:55.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:55.969][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:55.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:55.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:55.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:55.973][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:55.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:55.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:55.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:55.977][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:55.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:55.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:55.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:55.981][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:55.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:55.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:55.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:55.984][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:55.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:55.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:55.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:55.988][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:55.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:55.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:55.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:55.992][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:55.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:55.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:55.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:55.996][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:55.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:55.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:55.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:56.000][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:56.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:56.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:56.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:56.004][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:56.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:56.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:56.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:02:56.008][self$createEntryFromContent] Accession numbers: 70786.
biodb.TRACE[2025-06-28 16:02:56.009][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:56.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:56.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:56.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:56.013][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:56.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:56.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:56.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:56.017][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:56.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:56.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:56.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:02:56.021][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:02:56.022][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:02:56.022][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:02:56.027][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:02:56.028][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:02:56.029][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:02:56.030][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-28 16:02:56.031][private$loadEntries] Creating entries from ids [1]: "78144".
biodb.DEBUG[2025-06-28 16:02:56.032][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-06-28 16:02:56.034][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
biodb.DEBUG[2025-06-28 16:02:56.035][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-06-28 16:02:56.036][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-06-28 16:02:56.037][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-06-28 16:02:56.038][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-06-28 16:02:56.040][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:02:56.041][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:02:56.042][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:02:56.047][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:02:56.048][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:02:56.049][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:02:56.050][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-06-28 16:02:56.051][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=78144".
fscache.INFO [2025-06-28 16:02:56.053][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
sched.DEBUG[2025-06-28 16:02:56.054][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-06-28 16:02:56.055][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-06-28 16:02:56.056][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=78144".
sched.TRACE[2025-06-28 16:02:56.393][try_get_rcurl_content] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=78144).
fscache.INFO [2025-06-28 16:02:56.735][private$cache$saveContents] Save 1 contents to /home/biocbuild/.cache/R/sched.
fscache.INFO [2025-06-28 16:02:56.737][private$cache$saveContents] Save 1 contents to /home/biocbuild/.cache/R/sched.
sched.DEBUG[2025-06-28 16:02:56.753][scheduler$sendRequest] Retrieved content saved to cache.
fscache.INFO [2025-06-28 16:02:56.756][cch$saveContents] Save 1 contents to /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
biodb.DEBUG[2025-06-28 16:02:56.757][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-06-28 16:02:56.758][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-06-28 16:02:56.759][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-06-28 16:02:56.761][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:02:56.762][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:02:56.763][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:02:56.768][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:02:56.769][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:02:56.770][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:02:56.771][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:02:56.774][ef$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:56.776][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:56.777][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:56.778][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:56.779][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:56.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:56.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:56.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:56.783][ef$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:02:56.784][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:02:56.785][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:56.786][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:56.787][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:02:56.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:02:56.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:56.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:56.790][ef$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:02:56.791][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:02:56.792][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:56.793][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:56.794][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:02:56.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:02:56.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:56.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:56.798][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:02:56.799][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:02:56.800][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:56.801][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:56.802][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:02:56.803][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:02:56.803][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:56.804][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:56.805][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:02:56.806][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:02:56.807][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:56.808][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:56.809][ef$get] Asked field names are: mass.
biodb.TRACE[2025-06-28 16:02:56.810][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:56.811][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:56.812][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:56.813][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-06-28 16:02:56.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:56.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:56.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:56.817][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:56.818][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:56.818][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:56.819][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:56.820][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:56.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:56.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:56.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:56.824][ef$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:02:56.825][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:02:56.826][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:56.827][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:56.828][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:02:56.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:02:56.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:56.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:56.832][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-06-28 16:02:56.833][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:02:56.833][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:56.834][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:56.835][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-06-28 16:02:56.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:02:56.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:56.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:56.839][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:02:56.840][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:02:56.841][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:56.842][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:56.843][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:02:56.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:02:56.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:56.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:56.847][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:56.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:56.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:56.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:56.850][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:56.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:56.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:56.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:56.854][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:56.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:56.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:56.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:56.858][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:56.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:56.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:56.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:56.861][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:56.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:56.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:56.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:56.865][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:56.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:56.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:56.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:56.869][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:56.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:56.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:56.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:56.872][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:56.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:56.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:56.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:56.876][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:56.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:56.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:56.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:56.880][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:56.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:56.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:56.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:02:56.883][self$createEntryFromContent] Accession numbers: 78144.
biodb.TRACE[2025-06-28 16:02:56.884][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:56.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:56.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:56.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:56.888][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:56.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:56.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:56.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:56.892][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:56.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:56.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:56.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:02:56.896][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-06-28 16:02:56.897][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:02:56.898][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:02:56.899][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:02:56.903][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:02:56.904][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:02:56.905][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:02:56.906][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:02:56.907][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:56.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:56.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:56.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:56.911][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:56.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:56.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:56.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:56.914][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:02:56.915][private$selectFields]
biodb.TRACE[2025-06-28 16:02:56.916][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-06-28 16:02:56.917][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-06-28 16:02:56.918][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:02:56.919][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:56.920][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:56.921][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:56.921][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:56.922][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:56.923][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:56.924][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:56.925][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:56.926][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:02:56.927][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:02:56.928][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:56.929][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:56.930][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:56.930][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:56.931][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-06-28 16:02:56.932][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:56.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:56.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:56.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:56.936][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:56.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:56.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:56.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:56.940][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:56.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:56.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:56.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:56.943][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2025-06-28 16:02:56.944][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:02:56.945][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:02:56.946][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:02:56.950][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:02:56.951][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:02:56.952][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:02:56.953][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:02:56.954][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:56.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:56.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:56.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:56.957][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:56.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:56.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:56.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:56.961][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:02:56.962][private$selectFields]
biodb.TRACE[2025-06-28 16:02:56.963][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-06-28 16:02:56.964][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-06-28 16:02:56.965][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:02:56.965][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:56.966][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:56.967][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:56.968][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:56.969][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:56.970][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:56.971][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:56.972][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:56.973][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:02:56.974][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:02:56.974][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:56.975][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:56.976][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:56.977][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:56.978][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-06-28 16:02:56.979][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:56.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:56.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:56.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:56.983][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:56.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:56.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:56.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:56.986][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:56.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:56.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:56.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:56.990][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [28243].
biodb.DEBUG[2025-06-28 16:02:56.991][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:02:56.992][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:02:56.993][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:02:56.997][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:02:56.998][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:02:56.999][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:02:56.999][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:02:57.001][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:57.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:57.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:57.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:57.004][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:57.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:57.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:57.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:57.014][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:02:57.015][private$selectFields]
biodb.TRACE[2025-06-28 16:02:57.016][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-06-28 16:02:57.017][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-06-28 16:02:57.017][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:02:57.018][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:57.019][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:57.020][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:57.021][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:57.022][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:57.023][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:57.024][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:57.025][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:57.026][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:02:57.026][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:02:57.027][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:57.028][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:57.029][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:57.030][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:57.031][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-06-28 16:02:57.032][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:57.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:57.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:57.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:57.035][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:57.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:57.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:57.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:57.039][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:57.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:57.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:57.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:57.043][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [78144].
biodb.DEBUG[2025-06-28 16:02:57.044][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-06-28 16:02:57.044][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-06-28 16:02:57.046][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:02:57.047][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:02:57.048][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:02:57.052][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:02:57.053][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:02:57.054][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:02:57.054][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-06-28 16:02:57.057][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.6*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-06-28 16:02:57.059][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
sched.DEBUG[2025-06-28 16:02:57.060][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-06-28 16:02:57.061][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-06-28 16:02:57.063][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.6%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
sched.TRACE[2025-06-28 16:02:57.417][try_get_rcurl_content] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.6%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
fscache.INFO [2025-06-28 16:02:57.930][private$cache$saveContents] Save 1 contents to /home/biocbuild/.cache/R/sched.
fscache.INFO [2025-06-28 16:02:57.933][private$cache$saveContents] Save 1 contents to /home/biocbuild/.cache/R/sched.
sched.DEBUG[2025-06-28 16:02:57.934][self$getBiodb()$getRequestScheduler( ...] Retrieved content saved to cache.
biodb.DEBUG[2025-06-28 16:02:57.938][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:02:57.939][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:02:57.940][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:02:57.944][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:02:57.945][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:02:57.946][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:02:57.947][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:02:57.948][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:57.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:57.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:57.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:57.952][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:57.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:57.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:57.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:57.956][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:57.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:57.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:57.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:02:57.960][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:02:57.961][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:02:57.962][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:02:57.966][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:02:57.967][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:02:57.968][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:02:57.969][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:02:57.970][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:57.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:57.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:57.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:57.974][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:57.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:57.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:57.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:57.978][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:57.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:57.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:57.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:02:57.982][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:02:57.983][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:02:57.984][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:02:57.988][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:02:57.989][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:02:57.990][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:02:57.990][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:02:57.992][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:57.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:57.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:57.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:57.995][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:57.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:57.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:57.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:57.999][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:58.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:58.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:58.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:02:58.003][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-06-28 16:02:58.004][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:02:58.005][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:02:58.006][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:02:58.010][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:02:58.011][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:02:58.011][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:02:58.012][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:02:58.013][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:58.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:58.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:58.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:58.017][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:58.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:58.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:58.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:58.021][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:02:58.022][private$selectFields]
biodb.TRACE[2025-06-28 16:02:58.022][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-06-28 16:02:58.023][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-06-28 16:02:58.024][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:02:58.025][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:58.026][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:58.027][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:58.028][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:58.029][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:58.030][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:58.030][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:58.031][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:58.032][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:02:58.033][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:02:58.034][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:58.035][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:58.036][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:58.037][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:58.038][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-06-28 16:02:58.039][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:58.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:58.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:58.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:58.042][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:58.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:58.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:58.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:58.046][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:58.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:58.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:58.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:58.050][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2025-06-28 16:02:58.051][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:02:58.051][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:02:58.052][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:02:58.056][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:02:58.057][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:02:58.058][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:02:58.059][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:02:58.060][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:58.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:58.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:58.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:58.064][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:58.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:58.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:58.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:58.067][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:02:58.068][private$selectFields]
biodb.TRACE[2025-06-28 16:02:58.069][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-06-28 16:02:58.070][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-06-28 16:02:58.071][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:02:58.072][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:58.072][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:58.073][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:58.074][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:58.075][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:58.076][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:58.077][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:58.078][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:58.079][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:02:58.080][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:02:58.080][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:58.081][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:58.082][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:58.083][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:58.084][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-06-28 16:02:58.085][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:58.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:58.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:58.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:58.089][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:58.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:58.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:58.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:58.092][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:58.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:58.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:58.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:58.096][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [16587].
biodb.DEBUG[2025-06-28 16:02:58.097][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:02:58.098][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:02:58.099][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:02:58.103][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:02:58.104][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:02:58.104][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:02:58.105][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:02:58.106][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:58.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:58.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:58.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:58.110][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:58.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:58.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:58.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:58.114][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:02:58.115][private$selectFields]
biodb.TRACE[2025-06-28 16:02:58.115][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-06-28 16:02:58.116][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-06-28 16:02:58.117][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:02:58.118][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:58.119][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:58.120][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:58.121][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:58.122][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:58.123][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:58.123][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:58.124][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:58.125][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:02:58.134][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:02:58.135][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:58.137][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:58.137][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:58.138][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:58.139][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-06-28 16:02:58.140][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:58.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:58.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:58.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:58.144][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:58.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:58.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:58.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:58.147][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:58.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:58.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:58.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:58.151][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [19804].
biodb.DEBUG[2025-06-28 16:02:58.152][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-06-28 16:02:58.153][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-06-28 16:02:58.155][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:02:58.156][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:02:58.156][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:02:58.160][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:02:58.161][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:02:58.162][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:02:58.163][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-06-28 16:02:58.165][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.3*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-06-28 16:02:58.167][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
sched.DEBUG[2025-06-28 16:02:58.168][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-06-28 16:02:58.169][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-06-28 16:02:58.171][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.3%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
sched.TRACE[2025-06-28 16:02:58.510][try_get_rcurl_content] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.3%2A&searchCategory=MASS&maximumResults=0&starsCategory=ALL).
fscache.INFO [2025-06-28 16:02:58.853][private$cache$saveContents] Save 1 contents to /home/biocbuild/.cache/R/sched.
fscache.INFO [2025-06-28 16:02:58.859][private$cache$saveContents] Save 1 contents to /home/biocbuild/.cache/R/sched.
sched.DEBUG[2025-06-28 16:02:58.861][self$getBiodb()$getRequestScheduler( ...] Retrieved content saved to cache.
biodb.DEBUG[2025-06-28 16:02:58.867][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:02:58.869][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:02:58.871][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:02:58.881][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:02:58.883][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:02:58.885][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:02:58.887][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:02:58.889][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:58.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:58.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:58.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:58.898][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:58.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:58.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:58.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:58.904][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:58.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:58.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:58.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:02:58.911][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:02:58.912][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:02:58.913][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:02:58.919][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:02:58.920][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:02:58.922][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:02:58.923][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-28 16:02:58.924][private$loadEntries] Creating entries from ids [1]: "47739".
biodb.DEBUG[2025-06-28 16:02:58.925][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-06-28 16:02:58.927][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
biodb.DEBUG[2025-06-28 16:02:58.928][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-06-28 16:02:58.929][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-06-28 16:02:58.930][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-06-28 16:02:58.931][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-06-28 16:02:58.934][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:02:58.935][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:02:58.936][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:02:58.940][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:02:58.941][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:02:58.942][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:02:58.943][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-06-28 16:02:58.944][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=47739".
fscache.INFO [2025-06-28 16:02:58.946][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
sched.DEBUG[2025-06-28 16:02:58.947][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-06-28 16:02:58.948][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-06-28 16:02:58.949][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=47739".
sched.TRACE[2025-06-28 16:02:59.290][try_get_rcurl_content] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=47739).
fscache.INFO [2025-06-28 16:02:59.635][private$cache$saveContents] Save 1 contents to /home/biocbuild/.cache/R/sched.
fscache.INFO [2025-06-28 16:02:59.640][private$cache$saveContents] Save 1 contents to /home/biocbuild/.cache/R/sched.
sched.DEBUG[2025-06-28 16:02:59.642][scheduler$sendRequest] Retrieved content saved to cache.
fscache.INFO [2025-06-28 16:02:59.645][cch$saveContents] Save 1 contents to /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
biodb.DEBUG[2025-06-28 16:02:59.648][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-06-28 16:02:59.651][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-06-28 16:02:59.653][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-06-28 16:02:59.657][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:02:59.658][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:02:59.660][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:02:59.670][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:02:59.672][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:02:59.674][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:02:59.676][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:02:59.680][ef$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:59.682][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:59.684][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:59.685][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:59.687][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:59.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:59.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:59.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:59.694][ef$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:02:59.695][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:02:59.697][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:59.698][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:59.700][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:02:59.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:02:59.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:59.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:59.705][ef$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:02:59.706][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:02:59.707][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:59.708][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:59.710][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:02:59.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:02:59.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:59.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:59.714][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:02:59.715][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:02:59.716][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:59.717][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:59.719][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:02:59.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:02:59.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:59.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:59.723][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:02:59.724][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:02:59.725][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:59.726][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:59.727][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:02:59.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:02:59.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:59.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:59.730][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:02:59.731][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:02:59.732][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:59.733][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:59.734][ef$get] Asked field names are: mass.
biodb.TRACE[2025-06-28 16:02:59.735][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:59.736][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:59.737][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:59.738][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-06-28 16:02:59.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:59.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:59.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:59.742][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:59.743][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:59.743][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:59.744][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:59.745][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:59.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:02:59.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:59.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:59.749][ef$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:02:59.750][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:02:59.751][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:59.752][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:59.753][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:02:59.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:02:59.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:59.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:59.757][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-06-28 16:02:59.758][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:02:59.758][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:59.759][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:59.760][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-06-28 16:02:59.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:02:59.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:59.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:59.764][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:02:59.765][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:02:59.766][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:59.767][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:59.768][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:02:59.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:02:59.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:59.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:59.772][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:59.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:59.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:59.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:59.775][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:59.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:59.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:59.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:59.779][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:59.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:59.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:59.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:59.782][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:02:59.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:02:59.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:59.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:59.786][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:59.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:59.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:59.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:59.790][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:59.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:59.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:59.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:59.793][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:59.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:59.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:59.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:59.797][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:59.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:59.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:59.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:59.801][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:59.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:59.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:59.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:59.804][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:02:59.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:02:59.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:59.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:02:59.808][self$createEntryFromContent] Accession numbers: 47739.
biodb.TRACE[2025-06-28 16:02:59.809][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:59.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:59.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:59.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:59.812][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:59.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:59.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:59.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:02:59.816][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:59.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:02:59.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:02:59.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:02:59.831][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:02:59.832][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:02:59.833][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:02:59.837][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:02:59.838][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:02:59.838][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:02:59.839][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-28 16:02:59.840][private$loadEntries] Creating entries from ids [1]: "51744".
biodb.DEBUG[2025-06-28 16:02:59.841][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-06-28 16:02:59.842][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
biodb.DEBUG[2025-06-28 16:02:59.843][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-06-28 16:02:59.844][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-06-28 16:02:59.845][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-06-28 16:02:59.846][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-06-28 16:02:59.848][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:02:59.849][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:02:59.850][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:02:59.854][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:02:59.855][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:02:59.856][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:02:59.856][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-06-28 16:02:59.857][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=51744".
fscache.INFO [2025-06-28 16:02:59.859][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
sched.DEBUG[2025-06-28 16:02:59.860][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-06-28 16:02:59.861][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-06-28 16:02:59.862][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=51744".
sched.TRACE[2025-06-28 16:03:00.203][try_get_rcurl_content] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=51744).
fscache.INFO [2025-06-28 16:03:00.541][private$cache$saveContents] Save 1 contents to /home/biocbuild/.cache/R/sched.
fscache.INFO [2025-06-28 16:03:00.546][private$cache$saveContents] Save 1 contents to /home/biocbuild/.cache/R/sched.
sched.DEBUG[2025-06-28 16:03:00.549][scheduler$sendRequest] Retrieved content saved to cache.
fscache.INFO [2025-06-28 16:03:00.552][cch$saveContents] Save 1 contents to /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
biodb.DEBUG[2025-06-28 16:03:00.554][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-06-28 16:03:00.557][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-06-28 16:03:00.560][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-06-28 16:03:00.563][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:03:00.565][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:03:00.567][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:03:00.577][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:03:00.579][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:03:00.581][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:03:00.583][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:03:00.587][ef$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:00.589][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:00.590][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:00.592][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:00.594][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:00.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:00.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:00.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:00.600][ef$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:03:00.602][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:03:00.603][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:00.604][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:00.606][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:03:00.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:03:00.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:00.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:00.611][ef$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:03:00.613][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:03:00.614][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:00.615][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:00.616][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:03:00.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:03:00.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:00.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:00.621][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:03:00.622][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:03:00.623][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:00.624][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:00.625][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:03:00.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:03:00.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:00.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:00.629][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:03:00.630][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:03:00.631][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:00.632][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:00.633][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:03:00.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:03:00.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:00.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:00.637][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:03:00.638][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:03:00.639][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:00.639][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:00.640][ef$get] Asked field names are: mass.
biodb.TRACE[2025-06-28 16:03:00.641][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:00.642][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:00.643][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:00.644][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-06-28 16:03:00.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:00.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:00.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:00.648][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:00.649][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:00.650][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:00.651][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:00.652][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:00.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:00.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:00.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:00.656][ef$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:03:00.656][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:03:00.657][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:00.658][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:00.659][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:03:00.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:03:00.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:00.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:00.663][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-06-28 16:03:00.664][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:03:00.665][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:00.666][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:00.667][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-06-28 16:03:00.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:03:00.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:00.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:00.671][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:03:00.672][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:03:00.672][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:00.673][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:00.674][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:03:00.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:03:00.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:00.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:00.678][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:00.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:00.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:00.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:00.682][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:00.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:00.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:00.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:00.685][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:00.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:00.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:00.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:00.689][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:00.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:00.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:00.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:00.693][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:00.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:00.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:00.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:00.696][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:00.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:00.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:00.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:00.700][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:00.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:00.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:00.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:00.704][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:00.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:00.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:00.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:00.707][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:00.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:00.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:00.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:00.711][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:00.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:00.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:00.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:03:00.714][self$createEntryFromContent] Accession numbers: 51744.
biodb.TRACE[2025-06-28 16:03:00.715][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:00.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:00.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:00.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:00.719][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:00.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:00.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:00.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:00.723][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:00.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:00.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:00.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:03:00.726][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:03:00.727][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:03:00.728][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:03:00.732][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:03:00.733][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:03:00.734][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:03:00.735][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-28 16:03:00.736][private$loadEntries] Creating entries from ids [1]: "64473".
biodb.DEBUG[2025-06-28 16:03:00.736][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-06-28 16:03:00.738][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
biodb.DEBUG[2025-06-28 16:03:00.739][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-06-28 16:03:00.740][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-06-28 16:03:00.741][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-06-28 16:03:00.742][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-06-28 16:03:00.744][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:03:00.745][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:03:00.745][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:03:00.750][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:03:00.750][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:03:00.751][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:03:00.752][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-06-28 16:03:00.753][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=64473".
fscache.INFO [2025-06-28 16:03:00.755][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
sched.DEBUG[2025-06-28 16:03:00.756][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-06-28 16:03:00.757][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-06-28 16:03:00.758][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=64473".
sched.TRACE[2025-06-28 16:03:01.097][try_get_rcurl_content] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=64473).
fscache.INFO [2025-06-28 16:03:01.441][private$cache$saveContents] Save 1 contents to /home/biocbuild/.cache/R/sched.
fscache.INFO [2025-06-28 16:03:01.443][private$cache$saveContents] Save 1 contents to /home/biocbuild/.cache/R/sched.
sched.DEBUG[2025-06-28 16:03:01.444][scheduler$sendRequest] Retrieved content saved to cache.
fscache.INFO [2025-06-28 16:03:01.446][cch$saveContents] Save 1 contents to /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
biodb.DEBUG[2025-06-28 16:03:01.447][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-06-28 16:03:01.448][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-06-28 16:03:01.449][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-06-28 16:03:01.451][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:03:01.452][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:03:01.453][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:03:01.457][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:03:01.458][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:03:01.459][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:03:01.460][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:03:01.462][ef$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:01.463][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:01.464][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:01.465][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:01.466][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:01.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:01.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:01.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:01.470][ef$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:03:01.471][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:03:01.472][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:01.473][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:01.474][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:03:01.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:03:01.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:01.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:01.490][ef$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:03:01.491][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:03:01.492][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:01.493][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:01.494][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:03:01.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:03:01.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:01.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:01.498][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:03:01.499][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:03:01.500][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:01.500][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:01.502][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:03:01.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:03:01.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:01.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:01.505][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:03:01.506][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:03:01.507][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:01.508][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:01.509][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:03:01.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:03:01.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:01.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:01.513][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:03:01.514][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:03:01.514][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:01.515][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:01.516][ef$get] Asked field names are: mass.
biodb.TRACE[2025-06-28 16:03:01.517][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:01.518][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:01.519][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:01.520][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-06-28 16:03:01.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:01.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:01.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:01.524][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:01.525][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:01.526][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:01.526][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:01.527][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:01.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:01.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:01.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:01.531][ef$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:03:01.532][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:03:01.533][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:01.534][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:01.535][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:03:01.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:03:01.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:01.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:01.539][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-06-28 16:03:01.540][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:03:01.540][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:01.541][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:01.542][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-06-28 16:03:01.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:03:01.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:01.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:01.546][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:03:01.547][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:03:01.548][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:01.549][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:01.550][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:03:01.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:03:01.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:01.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:01.553][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:01.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:01.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:01.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:01.557][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:01.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:01.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:01.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:01.561][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:01.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:01.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:01.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:01.564][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:01.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:01.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:01.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:01.568][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:01.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:01.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:01.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:01.572][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:01.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:01.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:01.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:01.575][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:01.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:01.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:01.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:01.579][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:01.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:01.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:01.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:01.583][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:01.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:01.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:01.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:01.586][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:01.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:01.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:01.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:03:01.590][self$createEntryFromContent] Accession numbers: 64473.
biodb.TRACE[2025-06-28 16:03:01.591][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:01.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:01.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:01.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:01.595][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:01.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:01.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:01.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:01.598][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:01.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:01.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:01.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:03:01.602][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:03:01.603][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:03:01.604][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:03:01.608][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:03:01.609][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:03:01.609][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:03:01.610][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:03:01.611][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:01.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:01.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:01.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:01.615][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:01.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:01.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:01.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:01.618][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:01.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:01.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:01.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:03:01.622][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:03:01.623][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:03:01.624][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:03:01.628][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:03:01.628][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:03:01.629][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:03:01.630][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-28 16:03:01.631][private$loadEntries] Creating entries from ids [1]: "75244".
biodb.DEBUG[2025-06-28 16:03:01.632][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-06-28 16:03:01.633][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
biodb.DEBUG[2025-06-28 16:03:01.634][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-06-28 16:03:01.635][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-06-28 16:03:01.636][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-06-28 16:03:01.637][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-06-28 16:03:01.639][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:03:01.640][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:03:01.641][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:03:01.645][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:03:01.646][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:03:01.647][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:03:01.647][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-06-28 16:03:01.649][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=75244".
fscache.INFO [2025-06-28 16:03:01.651][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
sched.DEBUG[2025-06-28 16:03:01.652][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-06-28 16:03:01.652][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-06-28 16:03:01.654][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=75244".
sched.TRACE[2025-06-28 16:03:01.992][try_get_rcurl_content] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=75244).
fscache.INFO [2025-06-28 16:03:02.340][private$cache$saveContents] Save 1 contents to /home/biocbuild/.cache/R/sched.
fscache.INFO [2025-06-28 16:03:02.345][private$cache$saveContents] Save 1 contents to /home/biocbuild/.cache/R/sched.
sched.DEBUG[2025-06-28 16:03:02.347][scheduler$sendRequest] Retrieved content saved to cache.
fscache.INFO [2025-06-28 16:03:02.350][cch$saveContents] Save 1 contents to /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
biodb.DEBUG[2025-06-28 16:03:02.353][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-06-28 16:03:02.356][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-06-28 16:03:02.358][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-06-28 16:03:02.362][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:03:02.364][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:03:02.366][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:03:02.375][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:03:02.377][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:03:02.379][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:03:02.381][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:03:02.385][ef$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:02.387][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:02.389][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:02.390][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:02.392][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:02.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:02.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:02.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:02.399][ef$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:03:02.400][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:03:02.402][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:02.403][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:02.405][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:03:02.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:03:02.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:02.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:02.410][ef$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:03:02.411][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:03:02.412][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:02.413][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:02.415][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:03:02.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:03:02.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:02.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:02.419][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:03:02.421][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:03:02.422][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:02.423][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:02.424][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:03:02.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:03:02.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:02.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:02.428][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:03:02.429][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:03:02.430][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:02.431][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:02.432][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:03:02.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:03:02.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:02.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:02.436][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:03:02.437][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:03:02.438][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:02.438][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:02.440][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:03:02.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:03:02.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:02.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:02.443][ef$get] Asked field names are: mass.
biodb.TRACE[2025-06-28 16:03:02.444][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:02.445][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:02.446][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:02.447][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-06-28 16:03:02.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:02.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:02.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:02.451][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:02.452][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:02.453][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:02.453][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:02.459][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:02.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:02.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:02.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:02.467][ef$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:03:02.468][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:03:02.469][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:02.470][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:02.471][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:03:02.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:03:02.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:02.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:02.475][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-06-28 16:03:02.476][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:03:02.477][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:02.477][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:02.479][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-06-28 16:03:02.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:03:02.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:02.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:02.482][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:03:02.483][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:03:02.484][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:02.485][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:02.486][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:03:02.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:03:02.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:02.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:02.490][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:02.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:02.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:02.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:02.493][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:02.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:02.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:02.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:02.497][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:02.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:02.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:02.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:02.500][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:02.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:02.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:02.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:02.504][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:02.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:02.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:02.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:02.507][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:02.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:02.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:02.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:02.511][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:02.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:02.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:02.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:02.515][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:02.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:02.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:02.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:02.518][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:02.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:02.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:02.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:02.522][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:02.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:02.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:02.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:03:02.525][self$createEntryFromContent] Accession numbers: 75244.
biodb.TRACE[2025-06-28 16:03:02.526][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:02.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:02.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:02.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:02.530][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:02.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:02.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:02.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:02.534][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:02.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:02.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:02.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:03:02.537][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:03:02.538][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:03:02.539][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:03:02.543][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:03:02.544][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:03:02.545][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:03:02.545][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-28 16:03:02.546][private$loadEntries] Creating entries from ids [1]: "75311".
biodb.DEBUG[2025-06-28 16:03:02.547][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-06-28 16:03:02.549][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
biodb.DEBUG[2025-06-28 16:03:02.550][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-06-28 16:03:02.551][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-06-28 16:03:02.551][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-06-28 16:03:02.552][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-06-28 16:03:02.555][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:03:02.556][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:03:02.556][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:03:02.561][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:03:02.561][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:03:02.562][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:03:02.563][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-06-28 16:03:02.564][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=75311".
fscache.INFO [2025-06-28 16:03:02.566][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
sched.DEBUG[2025-06-28 16:03:02.567][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-06-28 16:03:02.568][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-06-28 16:03:02.569][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=75311".
sched.TRACE[2025-06-28 16:03:02.906][try_get_rcurl_content] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=75311).
fscache.INFO [2025-06-28 16:03:03.253][private$cache$saveContents] Save 1 contents to /home/biocbuild/.cache/R/sched.
fscache.INFO [2025-06-28 16:03:03.258][private$cache$saveContents] Save 1 contents to /home/biocbuild/.cache/R/sched.
sched.DEBUG[2025-06-28 16:03:03.261][scheduler$sendRequest] Retrieved content saved to cache.
fscache.INFO [2025-06-28 16:03:03.264][cch$saveContents] Save 1 contents to /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
biodb.DEBUG[2025-06-28 16:03:03.266][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-06-28 16:03:03.269][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-06-28 16:03:03.272][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-06-28 16:03:03.275][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:03:03.277][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:03:03.279][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:03:03.289][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:03:03.291][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:03:03.293][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:03:03.295][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:03:03.299][ef$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:03.301][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:03.303][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:03.304][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:03.306][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:03.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:03.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:03.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:03.313][ef$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:03:03.314][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:03:03.315][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:03.317][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:03.318][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:03:03.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:03:03.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:03.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:03.324][ef$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:03:03.325][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:03:03.326][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:03.327][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:03.329][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:03:03.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:03:03.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:03.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:03.333][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:03:03.334][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:03:03.335][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:03.336][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:03.337][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:03:03.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:03:03.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:03.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:03.341][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:03:03.342][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:03:03.343][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:03.344][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:03.345][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:03:03.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:03:03.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:03.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:03.349][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:03:03.350][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:03:03.351][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:03.352][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:03.353][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:03:03.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:03:03.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:03.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:03.357][ef$get] Asked field names are: mass.
biodb.TRACE[2025-06-28 16:03:03.357][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:03.358][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:03.359][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:03.360][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-06-28 16:03:03.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:03.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:03.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:03.364][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:03.365][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:03.366][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:03.367][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:03.368][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:03.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:03.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:03.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:03.372][ef$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:03:03.372][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:03:03.373][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:03.374][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:03.375][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:03:03.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:03:03.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:03.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:03.379][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-06-28 16:03:03.380][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:03:03.381][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:03.382][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:03.383][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-06-28 16:03:03.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:03:03.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:03.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:03.387][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:03:03.388][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:03:03.388][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:03.389][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:03.390][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:03:03.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:03:03.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:03.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:03.394][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:03.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:03.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:03.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:03.398][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:03.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:03.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:03.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:03.401][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:03.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:03.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:03.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:03.405][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:03.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:03.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:03.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:03.409][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:03.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:03.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:03.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:03.412][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:03.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:03.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:03.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:03.416][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:03.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:03.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:03.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:03.419][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:03.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:03.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:03.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:03.423][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:03.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:03.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:03.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:03.427][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:03.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:03.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:03.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:03:03.439][self$createEntryFromContent] Accession numbers: 75311.
biodb.TRACE[2025-06-28 16:03:03.440][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:03.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:03.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:03.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:03.444][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:03.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:03.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:03.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:03.447][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:03.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:03.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:03.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:03:03.451][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:03:03.452][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:03:03.453][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:03:03.457][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:03:03.458][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:03:03.458][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:03:03.459][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-28 16:03:03.460][private$loadEntries] Creating entries from ids [1]: "75350".
biodb.DEBUG[2025-06-28 16:03:03.461][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-06-28 16:03:03.462][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
biodb.DEBUG[2025-06-28 16:03:03.463][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-06-28 16:03:03.464][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-06-28 16:03:03.465][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-06-28 16:03:03.466][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-06-28 16:03:03.468][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:03:03.469][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:03:03.470][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:03:03.474][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:03:03.475][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:03:03.476][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:03:03.477][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-06-28 16:03:03.478][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=75350".
fscache.INFO [2025-06-28 16:03:03.479][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
sched.DEBUG[2025-06-28 16:03:03.480][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-06-28 16:03:03.481][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-06-28 16:03:03.482][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=75350".
sched.TRACE[2025-06-28 16:03:03.821][try_get_rcurl_content] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=75350).
fscache.INFO [2025-06-28 16:03:04.164][private$cache$saveContents] Save 1 contents to /home/biocbuild/.cache/R/sched.
fscache.INFO [2025-06-28 16:03:04.169][private$cache$saveContents] Save 1 contents to /home/biocbuild/.cache/R/sched.
sched.DEBUG[2025-06-28 16:03:04.172][scheduler$sendRequest] Retrieved content saved to cache.
fscache.INFO [2025-06-28 16:03:04.175][cch$saveContents] Save 1 contents to /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
biodb.DEBUG[2025-06-28 16:03:04.177][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-06-28 16:03:04.180][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-06-28 16:03:04.183][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-06-28 16:03:04.186][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:03:04.188][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:03:04.190][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:03:04.199][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:03:04.202][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:03:04.203][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:03:04.205][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:03:04.210][ef$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:04.212][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:04.213][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:04.215][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:04.217][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:04.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:04.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:04.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:04.223][ef$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:03:04.225][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:03:04.226][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:04.227][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:04.229][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:03:04.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:03:04.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:04.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:04.234][ef$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:03:04.236][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:03:04.237][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:04.238][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:04.239][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:03:04.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:03:04.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:04.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:04.244][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:03:04.245][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:03:04.246][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:04.247][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:04.248][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:03:04.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:03:04.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:04.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:04.252][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:03:04.253][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:03:04.254][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:04.255][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:04.256][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:03:04.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:03:04.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:04.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:04.260][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:03:04.261][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:03:04.262][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:04.263][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:04.264][ef$get] Asked field names are: mass.
biodb.TRACE[2025-06-28 16:03:04.265][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:04.266][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:04.266][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:04.268][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-06-28 16:03:04.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:04.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:04.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:04.271][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:04.272][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:04.273][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:04.274][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:04.275][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:04.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:04.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:04.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:04.279][ef$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:03:04.280][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:03:04.281][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:04.281][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:04.283][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:03:04.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:03:04.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:04.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:04.286][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-06-28 16:03:04.287][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:03:04.288][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:04.289][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:04.290][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-06-28 16:03:04.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:03:04.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:04.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:04.294][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:03:04.295][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:03:04.296][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:04.297][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:04.298][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:03:04.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:03:04.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:04.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:04.301][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:04.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:04.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:04.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:04.305][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:04.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:04.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:04.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:04.309][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:04.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:04.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:04.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:04.312][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:04.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:04.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:04.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:04.316][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:04.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:04.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:04.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:04.320][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:04.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:04.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:04.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:04.323][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:04.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:04.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:04.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:04.327][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:04.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:04.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:04.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:04.331][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:04.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:04.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:04.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:04.334][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:04.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:04.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:04.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:03:04.338][self$createEntryFromContent] Accession numbers: 75350.
biodb.TRACE[2025-06-28 16:03:04.339][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:04.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:04.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:04.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:04.342][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:04.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:04.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:04.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:04.346][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:04.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:04.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:04.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:03:04.350][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:03:04.350][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:03:04.351][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:03:04.355][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:03:04.356][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:03:04.357][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:03:04.358][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-28 16:03:04.359][private$loadEntries] Creating entries from ids [1]: "87236".
biodb.DEBUG[2025-06-28 16:03:04.360][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-06-28 16:03:04.361][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
biodb.DEBUG[2025-06-28 16:03:04.362][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-06-28 16:03:04.363][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-06-28 16:03:04.364][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-06-28 16:03:04.365][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-06-28 16:03:04.367][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:03:04.368][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:03:04.369][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:03:04.373][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:03:04.374][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:03:04.375][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:03:04.376][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-06-28 16:03:04.377][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=87236".
fscache.INFO [2025-06-28 16:03:04.379][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
sched.DEBUG[2025-06-28 16:03:04.380][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-06-28 16:03:04.380][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-06-28 16:03:04.382][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=87236".
sched.TRACE[2025-06-28 16:03:04.768][try_get_rcurl_content] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=87236).
fscache.INFO [2025-06-28 16:03:05.114][private$cache$saveContents] Save 1 contents to /home/biocbuild/.cache/R/sched.
fscache.INFO [2025-06-28 16:03:05.118][private$cache$saveContents] Save 1 contents to /home/biocbuild/.cache/R/sched.
sched.DEBUG[2025-06-28 16:03:05.121][scheduler$sendRequest] Retrieved content saved to cache.
fscache.INFO [2025-06-28 16:03:05.124][cch$saveContents] Save 1 contents to /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
biodb.DEBUG[2025-06-28 16:03:05.127][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-06-28 16:03:05.129][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-06-28 16:03:05.132][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-06-28 16:03:05.135][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:03:05.137][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:03:05.139][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:03:05.149][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:03:05.151][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:03:05.168][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:03:05.171][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:03:05.174][ef$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:05.175][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:05.176][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:05.178][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:05.179][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:05.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:05.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:05.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:05.184][ef$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:03:05.185][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:03:05.187][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:05.188][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:05.189][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:03:05.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:03:05.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:05.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:05.193][ef$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:03:05.194][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:03:05.195][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:05.196][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:05.197][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:03:05.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:03:05.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:05.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:05.201][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:03:05.202][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:03:05.203][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:05.204][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:05.205][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:03:05.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:03:05.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:05.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:05.209][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:03:05.210][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:03:05.211][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:05.212][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:05.213][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:03:05.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:03:05.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:05.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:05.216][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:03:05.217][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:03:05.218][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:05.219][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:05.220][ef$get] Asked field names are: mass.
biodb.TRACE[2025-06-28 16:03:05.221][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:05.222][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:05.223][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:05.224][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-06-28 16:03:05.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:05.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:05.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:05.227][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:05.228][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:05.229][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:05.230][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:05.231][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:05.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:05.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:05.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:05.235][ef$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:03:05.236][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:03:05.237][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:05.237][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:05.239][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:03:05.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:03:05.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:05.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:05.242][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-06-28 16:03:05.243][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:03:05.244][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:05.245][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:05.246][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-06-28 16:03:05.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:03:05.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:05.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:05.250][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:03:05.251][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:03:05.251][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:05.252][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:05.253][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:03:05.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:03:05.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:05.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:05.257][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:05.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:05.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:05.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:05.261][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:05.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:05.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:05.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:05.264][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:05.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:05.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:05.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:05.268][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:05.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:05.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:05.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:05.271][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:05.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:05.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:05.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:05.275][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:05.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:05.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:05.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:05.279][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:05.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:05.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:05.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:05.283][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:05.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:05.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:05.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:05.286][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:05.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:05.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:05.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:05.290][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:05.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:05.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:05.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:03:05.293][self$createEntryFromContent] Accession numbers: 87236.
biodb.TRACE[2025-06-28 16:03:05.294][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:05.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:05.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:05.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:05.298][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:05.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:05.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:05.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:05.302][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:05.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:05.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:05.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:03:05.305][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:03:05.306][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:03:05.307][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:03:05.311][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:03:05.312][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:03:05.313][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:03:05.314][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-28 16:03:05.315][private$loadEntries] Creating entries from ids [1]: "132193".
biodb.DEBUG[2025-06-28 16:03:05.316][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-06-28 16:03:05.317][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
biodb.DEBUG[2025-06-28 16:03:05.318][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-06-28 16:03:05.319][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-06-28 16:03:05.320][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-06-28 16:03:05.321][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-06-28 16:03:05.323][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:03:05.324][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:03:05.325][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:03:05.329][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:03:05.329][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:03:05.330][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:03:05.331][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-06-28 16:03:05.332][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=132193".
fscache.INFO [2025-06-28 16:03:05.334][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
sched.DEBUG[2025-06-28 16:03:05.335][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-06-28 16:03:05.336][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-06-28 16:03:05.337][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=132193".
sched.TRACE[2025-06-28 16:03:05.678][try_get_rcurl_content] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=132193).
fscache.INFO [2025-06-28 16:03:06.024][private$cache$saveContents] Save 1 contents to /home/biocbuild/.cache/R/sched.
fscache.INFO [2025-06-28 16:03:06.027][private$cache$saveContents] Save 1 contents to /home/biocbuild/.cache/R/sched.
sched.DEBUG[2025-06-28 16:03:06.028][scheduler$sendRequest] Retrieved content saved to cache.
fscache.INFO [2025-06-28 16:03:06.030][cch$saveContents] Save 1 contents to /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
biodb.DEBUG[2025-06-28 16:03:06.031][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-06-28 16:03:06.032][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-06-28 16:03:06.034][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-06-28 16:03:06.035][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:03:06.036][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:03:06.037][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:03:06.042][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:03:06.043][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:03:06.044][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:03:06.045][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:03:06.049][ef$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:06.051][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:06.052][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:06.054][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:06.055][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:06.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:06.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:06.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:06.061][ef$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:03:06.062][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:03:06.063][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:06.064][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:06.066][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:03:06.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:03:06.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:06.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:06.070][ef$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:03:06.072][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:03:06.073][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:06.074][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:06.075][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:03:06.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:03:06.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:06.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:06.079][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:03:06.080][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:03:06.081][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:06.082][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:06.083][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:03:06.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:03:06.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:06.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:06.087][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:03:06.088][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:03:06.089][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:06.090][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:06.091][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:03:06.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:03:06.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:06.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:06.094][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:03:06.095][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:03:06.096][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:06.097][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:06.098][ef$get] Asked field names are: mass.
biodb.TRACE[2025-06-28 16:03:06.099][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:06.100][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:06.101][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:06.102][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-06-28 16:03:06.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:06.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:06.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:06.106][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:06.107][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:06.108][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:06.108][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:06.110][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:06.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:06.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:06.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:06.113][ef$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:03:06.114][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:03:06.115][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:06.116][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:06.117][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:03:06.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:03:06.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:06.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:06.134][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-06-28 16:03:06.135][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:03:06.136][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:06.137][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:06.138][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-06-28 16:03:06.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:03:06.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:06.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:06.142][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:03:06.143][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:03:06.144][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:06.145][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:06.146][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:03:06.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:03:06.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:06.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:06.149][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:06.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:06.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:06.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:06.153][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:06.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:06.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:06.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:06.157][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:06.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:06.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:06.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:06.160][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:06.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:06.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:06.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:06.164][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:06.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:06.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:06.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:06.167][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:06.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:06.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:06.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:06.171][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:06.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:06.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:06.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:06.175][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:06.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:06.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:06.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:06.178][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:06.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:06.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:06.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:06.182][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:06.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:06.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:06.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:03:06.185][self$createEntryFromContent] Accession numbers: 132193.
biodb.TRACE[2025-06-28 16:03:06.186][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:06.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:06.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:06.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:06.190][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:06.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:06.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:06.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:06.194][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:06.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:06.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:06.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:03:06.197][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:03:06.198][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:03:06.199][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:03:06.203][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:03:06.204][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:03:06.205][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:03:06.206][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-28 16:03:06.207][private$loadEntries] Creating entries from ids [1]: "146002".
biodb.DEBUG[2025-06-28 16:03:06.208][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-06-28 16:03:06.209][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
biodb.DEBUG[2025-06-28 16:03:06.210][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-06-28 16:03:06.211][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-06-28 16:03:06.212][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-06-28 16:03:06.213][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-06-28 16:03:06.215][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:03:06.216][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:03:06.217][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:03:06.221][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:03:06.221][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:03:06.222][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:03:06.223][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-06-28 16:03:06.224][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=146002".
fscache.INFO [2025-06-28 16:03:06.226][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
sched.DEBUG[2025-06-28 16:03:06.227][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-06-28 16:03:06.228][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-06-28 16:03:06.229][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=146002".
sched.TRACE[2025-06-28 16:03:06.569][try_get_rcurl_content] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=146002).
fscache.INFO [2025-06-28 16:03:06.914][private$cache$saveContents] Save 1 contents to /home/biocbuild/.cache/R/sched.
fscache.INFO [2025-06-28 16:03:06.916][private$cache$saveContents] Save 1 contents to /home/biocbuild/.cache/R/sched.
sched.DEBUG[2025-06-28 16:03:06.918][scheduler$sendRequest] Retrieved content saved to cache.
fscache.INFO [2025-06-28 16:03:06.920][cch$saveContents] Save 1 contents to /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
biodb.DEBUG[2025-06-28 16:03:06.921][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-06-28 16:03:06.923][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-06-28 16:03:06.924][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-06-28 16:03:06.926][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:03:06.927][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:03:06.928][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:03:06.934][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:03:06.935][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:03:06.936][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:03:06.937][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:03:06.940][ef$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:06.941][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:06.942][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:06.943][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:06.945][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:06.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:06.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:06.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:06.950][ef$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:03:06.952][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:03:06.953][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:06.954][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:06.956][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:03:06.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:03:06.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:06.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:06.960][ef$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:03:06.962][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:03:06.963][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:06.964][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:06.965][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:03:06.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:03:06.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:06.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:06.969][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:03:06.970][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:03:06.971][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:06.972][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:06.973][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:03:06.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:03:06.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:06.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:06.977][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:03:06.978][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:03:06.979][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:06.980][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:06.981][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:03:06.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:03:06.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:06.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:06.985][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:03:06.986][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:03:06.987][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:06.988][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:06.989][ef$get] Asked field names are: mass.
biodb.TRACE[2025-06-28 16:03:06.990][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:06.990][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:06.991][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:06.992][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-06-28 16:03:06.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:06.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:06.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:06.996][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:06.997][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:06.998][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:06.999][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:07.000][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:07.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:07.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:07.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:07.004][ef$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:03:07.005][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:03:07.005][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:07.006][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:07.008][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:03:07.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:03:07.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:07.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:07.011][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-06-28 16:03:07.012][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:03:07.013][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:07.014][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:07.015][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-06-28 16:03:07.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:03:07.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:07.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:07.019][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:03:07.020][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:03:07.021][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:07.021][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:07.022][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:03:07.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:03:07.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:07.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:07.026][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:07.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:07.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:07.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:07.030][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:07.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:07.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:07.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:07.033][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:07.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:07.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:07.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:07.037][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:07.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:07.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:07.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:07.041][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:07.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:07.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:07.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:07.044][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:07.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:07.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:07.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:07.048][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:07.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:07.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:07.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:07.052][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:07.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:07.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:07.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:07.055][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:07.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:07.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:07.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:07.059][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:07.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:07.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:07.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:03:07.062][self$createEntryFromContent] Accession numbers: 146002.
biodb.TRACE[2025-06-28 16:03:07.063][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:07.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:07.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:07.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:07.067][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:07.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:07.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:07.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:07.071][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:07.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:07.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:07.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:03:07.074][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:03:07.083][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:03:07.084][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:03:07.089][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:03:07.089][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:03:07.090][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:03:07.091][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-28 16:03:07.092][private$loadEntries] Creating entries from ids [1]: "65641".
biodb.DEBUG[2025-06-28 16:03:07.093][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-06-28 16:03:07.094][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
biodb.DEBUG[2025-06-28 16:03:07.095][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-06-28 16:03:07.096][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-06-28 16:03:07.097][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-06-28 16:03:07.098][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-06-28 16:03:07.100][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:03:07.101][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:03:07.102][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:03:07.106][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:03:07.107][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:03:07.107][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:03:07.108][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-06-28 16:03:07.109][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=65641".
fscache.INFO [2025-06-28 16:03:07.111][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
sched.DEBUG[2025-06-28 16:03:07.112][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-06-28 16:03:07.113][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-06-28 16:03:07.114][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=65641".
sched.TRACE[2025-06-28 16:03:07.450][try_get_rcurl_content] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=65641).
fscache.INFO [2025-06-28 16:03:07.796][private$cache$saveContents] Save 1 contents to /home/biocbuild/.cache/R/sched.
fscache.INFO [2025-06-28 16:03:07.801][private$cache$saveContents] Save 1 contents to /home/biocbuild/.cache/R/sched.
sched.DEBUG[2025-06-28 16:03:07.803][scheduler$sendRequest] Retrieved content saved to cache.
fscache.INFO [2025-06-28 16:03:07.805][cch$saveContents] Save 1 contents to /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
biodb.DEBUG[2025-06-28 16:03:07.807][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-06-28 16:03:07.809][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-06-28 16:03:07.811][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-06-28 16:03:07.814][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:03:07.816][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:03:07.817][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:03:07.825][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:03:07.826][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:03:07.828][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:03:07.829][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:03:07.832][ef$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:07.834][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:07.836][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:07.837][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:07.839][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:07.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:07.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:07.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:07.845][ef$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:03:07.846][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:03:07.847][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:07.849][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:07.850][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:03:07.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:03:07.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:07.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:07.855][ef$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:03:07.856][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:03:07.858][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:07.859][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:07.860][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:03:07.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:03:07.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:07.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:07.864][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:03:07.865][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:03:07.866][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:07.867][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:07.868][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:03:07.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:03:07.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:07.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:07.872][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:03:07.873][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:03:07.874][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:07.875][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:07.876][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:03:07.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:03:07.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:07.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:07.880][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:03:07.881][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:03:07.882][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:07.882][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:07.884][ef$get] Asked field names are: mass.
biodb.TRACE[2025-06-28 16:03:07.885][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:07.885][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:07.886][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:07.887][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-06-28 16:03:07.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:07.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:07.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:07.891][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:07.892][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:07.893][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:07.894][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:07.895][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:07.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:07.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:07.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:07.899][ef$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:03:07.900][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:03:07.901][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:07.902][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:07.903][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:03:07.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:03:07.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:07.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:07.907][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-06-28 16:03:07.908][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:03:07.909][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:07.909][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:07.910][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-06-28 16:03:07.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:03:07.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:07.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:07.914][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:03:07.915][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:03:07.916][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:07.917][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:07.918][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:03:07.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:03:07.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:07.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:07.922][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:07.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:07.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:07.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:07.925][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:07.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:07.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:07.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:07.929][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:07.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:07.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:07.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:07.933][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:07.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:07.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:07.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:07.937][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:07.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:07.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:07.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:07.940][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:07.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:07.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:07.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:07.944][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:07.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:07.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:07.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:07.948][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:07.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:07.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:07.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:07.951][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:07.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:07.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:07.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:07.955][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:07.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:07.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:07.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:03:07.959][self$createEntryFromContent] Accession numbers: 65641.
biodb.TRACE[2025-06-28 16:03:07.960][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:07.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:07.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:07.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:07.963][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:07.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:07.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:07.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:07.967][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:07.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:07.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:07.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:03:07.971][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:03:07.971][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:03:07.972][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:03:07.976][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:03:07.977][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:03:07.978][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:03:07.979][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-28 16:03:07.980][private$loadEntries] Creating entries from ids [1]: "144071".
biodb.DEBUG[2025-06-28 16:03:07.981][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-06-28 16:03:07.982][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
biodb.DEBUG[2025-06-28 16:03:07.983][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-06-28 16:03:07.984][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-06-28 16:03:07.985][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-06-28 16:03:07.986][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-06-28 16:03:07.988][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:03:07.989][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:03:07.990][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:03:07.994][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:03:07.995][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:03:07.996][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:03:07.997][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-06-28 16:03:07.998][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=144071".
fscache.INFO [2025-06-28 16:03:08.000][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
sched.DEBUG[2025-06-28 16:03:08.001][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-06-28 16:03:08.001][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-06-28 16:03:08.003][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=144071".
sched.TRACE[2025-06-28 16:03:08.341][try_get_rcurl_content] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=144071).
fscache.INFO [2025-06-28 16:03:08.684][private$cache$saveContents] Save 1 contents to /home/biocbuild/.cache/R/sched.
fscache.INFO [2025-06-28 16:03:08.689][private$cache$saveContents] Save 1 contents to /home/biocbuild/.cache/R/sched.
sched.DEBUG[2025-06-28 16:03:08.691][scheduler$sendRequest] Retrieved content saved to cache.
fscache.INFO [2025-06-28 16:03:08.694][cch$saveContents] Save 1 contents to /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
biodb.DEBUG[2025-06-28 16:03:08.697][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-06-28 16:03:08.700][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-06-28 16:03:08.702][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-06-28 16:03:08.706][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:03:08.707][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:03:08.709][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:03:08.719][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:03:08.721][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:03:08.722][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:03:08.724][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:03:08.728][ef$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:08.730][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:08.732][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:08.734][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:08.736][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:08.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:08.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:08.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:08.742][ef$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:03:08.744][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:03:08.745][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:08.746][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:08.748][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:03:08.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:03:08.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:08.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:08.766][ef$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:03:08.767][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:03:08.768][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:08.769][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:08.771][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:03:08.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:03:08.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:08.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:08.775][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:03:08.776][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:03:08.777][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:08.778][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:08.779][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:03:08.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:03:08.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:08.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:08.782][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:03:08.783][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:03:08.784][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:08.785][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:08.786][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:03:08.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:03:08.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:08.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:08.790][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:03:08.791][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:03:08.792][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:08.792][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:08.794][ef$get] Asked field names are: mass.
biodb.TRACE[2025-06-28 16:03:08.795][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:08.795][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:08.796][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:08.797][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-06-28 16:03:08.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:08.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:08.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:08.801][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:08.802][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:08.803][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:08.804][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:08.805][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:08.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:08.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:08.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:08.808][ef$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:03:08.809][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:03:08.810][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:08.811][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:08.812][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:03:08.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:03:08.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:08.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:08.816][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-06-28 16:03:08.817][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:03:08.818][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:08.819][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:08.820][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-06-28 16:03:08.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:03:08.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:08.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:08.823][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:03:08.824][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:03:08.825][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:08.826][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:08.827][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:03:08.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:03:08.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:08.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:08.831][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:08.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:08.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:08.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:08.835][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:08.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:08.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:08.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:08.838][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:08.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:08.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:08.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:08.842][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:08.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:08.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:08.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:08.845][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:08.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:08.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:08.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:08.849][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:08.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:08.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:08.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:08.853][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:08.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:08.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:08.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:08.856][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:08.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:08.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:08.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:08.860][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:08.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:08.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:08.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:08.864][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:08.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:08.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:08.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:03:08.867][self$createEntryFromContent] Accession numbers: 144071.
biodb.TRACE[2025-06-28 16:03:08.868][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:08.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:08.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:08.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:08.872][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:08.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:08.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:08.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:08.876][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:08.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:08.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:08.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:03:08.879][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:03:08.880][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:03:08.881][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:03:08.885][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:03:08.886][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:03:08.887][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:03:08.888][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:03:08.889][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:08.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:08.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:08.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:08.893][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:08.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:08.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:08.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:08.896][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:08.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:08.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:08.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:03:08.900][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:03:08.901][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:03:08.902][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:03:08.906][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:03:08.907][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:03:08.907][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:03:08.908][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:03:08.909][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:08.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:08.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:08.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:08.913][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:08.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:08.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:08.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:08.917][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:08.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:08.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:08.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:03:08.920][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:03:08.921][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:03:08.922][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:03:08.926][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:03:08.927][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:03:08.927][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:03:08.928][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:03:08.929][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:08.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:08.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:08.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:08.933][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:08.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:08.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:08.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:08.937][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:08.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:08.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:08.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:03:08.940][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:03:08.941][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:03:08.942][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:03:08.946][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:03:08.947][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:03:08.948][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:03:08.948][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:03:08.950][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:08.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:08.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:08.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:08.953][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:08.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:08.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:08.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:08.957][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:08.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:08.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:08.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:03:08.961][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:03:08.961][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:03:08.962][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:03:08.966][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:03:08.967][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:03:08.968][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:03:08.969][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:03:08.970][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:08.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:08.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:08.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:08.973][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:08.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:08.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:08.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:08.977][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:08.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:08.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:08.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:03:08.981][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:03:08.982][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:03:08.982][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:03:08.987][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:03:08.987][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:03:08.988][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:03:08.989][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:03:08.990][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:08.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:08.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:08.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:08.994][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:08.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:08.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:08.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:08.998][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:08.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:08.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:09.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:03:09.001][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:03:09.002][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:03:09.003][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:03:09.007][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:03:09.008][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:03:09.009][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:03:09.010][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-28 16:03:09.011][private$loadEntries] Creating entries from ids [1]: "168650".
biodb.DEBUG[2025-06-28 16:03:09.012][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-06-28 16:03:09.013][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
biodb.DEBUG[2025-06-28 16:03:09.019][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-06-28 16:03:09.020][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-06-28 16:03:09.021][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-06-28 16:03:09.022][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-06-28 16:03:09.025][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:03:09.026][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:03:09.026][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:03:09.031][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:03:09.032][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:03:09.032][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:03:09.033][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-06-28 16:03:09.034][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=168650".
fscache.INFO [2025-06-28 16:03:09.036][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
sched.DEBUG[2025-06-28 16:03:09.037][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-06-28 16:03:09.038][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-06-28 16:03:09.039][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=168650".
sched.TRACE[2025-06-28 16:03:09.379][try_get_rcurl_content] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=168650).
fscache.INFO [2025-06-28 16:03:09.720][private$cache$saveContents] Save 1 contents to /home/biocbuild/.cache/R/sched.
fscache.INFO [2025-06-28 16:03:09.723][private$cache$saveContents] Save 1 contents to /home/biocbuild/.cache/R/sched.
sched.DEBUG[2025-06-28 16:03:09.724][scheduler$sendRequest] Retrieved content saved to cache.
fscache.INFO [2025-06-28 16:03:09.726][cch$saveContents] Save 1 contents to /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
biodb.DEBUG[2025-06-28 16:03:09.727][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-06-28 16:03:09.728][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-06-28 16:03:09.729][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-06-28 16:03:09.731][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:03:09.732][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:03:09.733][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:03:09.738][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:03:09.739][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:03:09.740][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:03:09.741][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:03:09.743][ef$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:09.744][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:09.745][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:09.746][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:09.748][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:09.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:09.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:09.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:09.752][ef$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:03:09.753][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:03:09.754][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:09.755][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:09.756][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:03:09.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:03:09.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:09.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:09.760][ef$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:03:09.761][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:03:09.762][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:09.763][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:09.765][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:03:09.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:03:09.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:09.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:09.769][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:03:09.770][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:03:09.771][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:09.772][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:09.773][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:03:09.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:03:09.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:09.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:09.777][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:03:09.778][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:03:09.779][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:09.780][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:09.781][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:03:09.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:03:09.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:09.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:09.785][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:03:09.786][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:03:09.787][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:09.788][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:09.789][ef$get] Asked field names are: mass.
biodb.TRACE[2025-06-28 16:03:09.790][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:09.791][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:09.792][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:09.793][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-06-28 16:03:09.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:09.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:09.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:09.797][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:09.798][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:09.799][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:09.800][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:09.801][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:09.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:09.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:09.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:09.805][ef$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:03:09.806][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:03:09.807][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:09.808][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:09.809][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:03:09.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:03:09.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:09.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:09.813][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-06-28 16:03:09.814][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:03:09.815][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:09.816][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:09.817][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-06-28 16:03:09.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:03:09.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:09.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:09.821][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:03:09.822][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:03:09.823][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:09.824][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:09.825][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:03:09.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:03:09.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:09.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:09.829][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:09.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:09.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:09.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:09.833][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:09.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:09.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:09.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:09.837][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:09.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:09.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:09.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:09.841][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:09.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:09.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:09.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:09.845][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:09.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:09.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:09.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:09.849][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:09.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:09.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:09.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:09.853][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:09.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:09.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:09.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:09.857][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:09.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:09.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:09.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:09.861][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:09.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:09.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:09.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:09.865][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:09.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:09.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:09.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:03:09.868][self$createEntryFromContent] Accession numbers: 168650.
biodb.TRACE[2025-06-28 16:03:09.870][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:09.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:09.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:09.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:09.873][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:09.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:09.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:09.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:09.877][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:09.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:09.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:09.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:03:09.881][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:03:09.882][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:03:09.883][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:03:09.888][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:03:09.889][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:03:09.890][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:03:09.891][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:03:09.892][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:09.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:09.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:09.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:09.896][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:09.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:09.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:09.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:09.899][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:09.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:09.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:09.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:03:09.903][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:03:09.904][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:03:09.905][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:03:09.910][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:03:09.911][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:03:09.912][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:03:09.913][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-28 16:03:09.914][private$loadEntries] Creating entries from ids [1]: "169305".
biodb.DEBUG[2025-06-28 16:03:09.915][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-06-28 16:03:09.917][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
biodb.DEBUG[2025-06-28 16:03:09.918][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-06-28 16:03:09.919][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-06-28 16:03:09.920][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-06-28 16:03:09.921][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-06-28 16:03:09.923][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:03:09.924][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:03:09.925][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:03:09.930][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:03:09.931][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:03:09.931][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:03:09.932][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-06-28 16:03:09.933][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=169305".
fscache.INFO [2025-06-28 16:03:09.935][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
sched.DEBUG[2025-06-28 16:03:09.936][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-06-28 16:03:09.937][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-06-28 16:03:09.938][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=169305".
sched.TRACE[2025-06-28 16:03:10.292][try_get_rcurl_content] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=169305).
fscache.INFO [2025-06-28 16:03:10.633][private$cache$saveContents] Save 1 contents to /home/biocbuild/.cache/R/sched.
fscache.INFO [2025-06-28 16:03:10.637][private$cache$saveContents] Save 1 contents to /home/biocbuild/.cache/R/sched.
sched.DEBUG[2025-06-28 16:03:10.640][scheduler$sendRequest] Retrieved content saved to cache.
fscache.INFO [2025-06-28 16:03:10.643][cch$saveContents] Save 1 contents to /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
biodb.DEBUG[2025-06-28 16:03:10.646][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-06-28 16:03:10.649][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-06-28 16:03:10.651][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-06-28 16:03:10.655][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:03:10.657][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:03:10.659][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:03:10.669][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:03:10.671][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:03:10.673][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:03:10.675][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:03:10.680][ef$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:10.682][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:10.683][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:10.685][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:10.687][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:10.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:10.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:10.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:10.709][ef$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:03:10.710][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:03:10.711][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:10.712][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:10.714][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:03:10.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:03:10.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:10.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:10.718][ef$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:03:10.720][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:03:10.721][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:10.721][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:10.723][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:03:10.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:03:10.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:10.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:10.727][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:03:10.728][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:03:10.729][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:10.730][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:10.731][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:03:10.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:03:10.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:10.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:10.735][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:03:10.736][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:03:10.736][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:10.737][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:10.738][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:03:10.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:03:10.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:10.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:10.742][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:03:10.743][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:03:10.744][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:10.745][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:10.746][ef$get] Asked field names are: mass.
biodb.TRACE[2025-06-28 16:03:10.747][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:10.748][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:10.749][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:10.750][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-06-28 16:03:10.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:10.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:10.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:10.754][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:10.755][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:10.755][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:10.756][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:10.757][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:10.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:10.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:10.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:10.761][ef$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:03:10.762][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:03:10.763][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:10.764][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:10.765][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:03:10.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:03:10.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:10.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:10.769][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-06-28 16:03:10.770][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:03:10.771][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:10.771][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:10.773][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-06-28 16:03:10.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:03:10.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:10.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:10.776][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:03:10.777][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:03:10.778][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:10.779][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:10.780][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:03:10.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:03:10.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:10.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:10.784][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:10.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:10.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:10.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:10.787][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:10.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:10.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:10.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:10.791][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:10.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:10.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:10.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:10.795][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:10.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:10.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:10.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:10.798][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:10.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:10.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:10.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:10.802][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:10.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:10.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:10.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:10.806][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:10.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:10.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:10.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:10.809][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:10.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:10.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:10.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:10.813][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:10.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:10.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:10.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:10.817][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:10.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:10.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:10.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:03:10.821][self$createEntryFromContent] Accession numbers: 169305.
biodb.TRACE[2025-06-28 16:03:10.822][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:10.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:10.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:10.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:10.825][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:10.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:10.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:10.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:10.829][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:10.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:10.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:10.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:03:10.833][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:03:10.834][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:03:10.835][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:03:10.839][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:03:10.840][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:03:10.840][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:03:10.841][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-28 16:03:10.842][private$loadEntries] Creating entries from ids [1]: "176869".
biodb.DEBUG[2025-06-28 16:03:10.843][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-06-28 16:03:10.845][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
biodb.DEBUG[2025-06-28 16:03:10.846][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-06-28 16:03:10.847][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-06-28 16:03:10.847][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-06-28 16:03:10.848][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-06-28 16:03:10.851][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:03:10.852][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:03:10.852][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:03:10.857][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:03:10.857][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:03:10.858][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:03:10.859][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-06-28 16:03:10.860][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=176869".
fscache.INFO [2025-06-28 16:03:10.862][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
sched.DEBUG[2025-06-28 16:03:10.863][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-06-28 16:03:10.864][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-06-28 16:03:10.865][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=176869".
sched.TRACE[2025-06-28 16:03:11.208][try_get_rcurl_content] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=176869).
fscache.INFO [2025-06-28 16:03:11.551][private$cache$saveContents] Save 1 contents to /home/biocbuild/.cache/R/sched.
fscache.INFO [2025-06-28 16:03:11.554][private$cache$saveContents] Save 1 contents to /home/biocbuild/.cache/R/sched.
sched.DEBUG[2025-06-28 16:03:11.555][scheduler$sendRequest] Retrieved content saved to cache.
fscache.INFO [2025-06-28 16:03:11.557][cch$saveContents] Save 1 contents to /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
biodb.DEBUG[2025-06-28 16:03:11.558][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-06-28 16:03:11.560][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-06-28 16:03:11.561][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-06-28 16:03:11.563][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:03:11.564][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:03:11.565][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:03:11.569][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:03:11.570][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:03:11.571][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:03:11.572][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:03:11.574][ef$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:11.575][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:11.576][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:11.577][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:11.578][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:11.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:11.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:11.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:11.582][ef$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:03:11.583][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:03:11.584][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:11.585][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:11.586][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:03:11.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:03:11.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:11.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:11.590][ef$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:03:11.591][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:03:11.592][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:11.593][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:11.594][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:03:11.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:03:11.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:11.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:11.598][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:03:11.600][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:03:11.600][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:11.601][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:11.603][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:03:11.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:03:11.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:11.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:11.607][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:03:11.608][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:03:11.609][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:11.609][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:11.611][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:03:11.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:03:11.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:11.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:11.614][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:03:11.615][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:03:11.616][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:11.617][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:11.618][ef$get] Asked field names are: mass.
biodb.TRACE[2025-06-28 16:03:11.619][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:11.620][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:11.621][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:11.622][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-06-28 16:03:11.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:11.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:11.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:11.626][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:11.627][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:11.628][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:11.628][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:11.630][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:11.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:11.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:11.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:11.633][ef$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:03:11.634][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:03:11.635][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:11.636][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:11.637][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:03:11.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:03:11.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:11.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:11.641][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-06-28 16:03:11.642][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:03:11.643][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:11.644][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:11.645][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-06-28 16:03:11.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:03:11.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:11.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:11.657][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:03:11.659][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:03:11.660][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:11.661][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:11.662][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:03:11.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:03:11.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:11.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:11.666][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:11.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:11.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:11.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:11.669][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:11.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:11.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:11.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:11.673][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:11.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:11.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:11.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:11.676][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:11.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:11.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:11.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:11.680][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:11.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:11.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:11.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:11.684][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:11.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:11.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:11.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:11.687][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:11.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:11.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:11.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:11.691][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:11.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:11.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:11.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:11.695][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:11.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:11.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:11.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:11.698][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:11.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:11.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:11.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:03:11.702][self$createEntryFromContent] Accession numbers: 176869.
biodb.TRACE[2025-06-28 16:03:11.703][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:11.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:11.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:11.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:11.706][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:11.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:11.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:11.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:11.710][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:11.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:11.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:11.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:03:11.714][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:03:11.714][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:03:11.715][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:03:11.720][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:03:11.720][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:03:11.721][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:03:11.722][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-28 16:03:11.723][private$loadEntries] Creating entries from ids [1]: "185696".
biodb.DEBUG[2025-06-28 16:03:11.724][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-06-28 16:03:11.725][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
biodb.DEBUG[2025-06-28 16:03:11.726][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-06-28 16:03:11.727][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-06-28 16:03:11.728][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-06-28 16:03:11.729][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-06-28 16:03:11.732][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:03:11.732][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:03:11.733][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:03:11.737][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:03:11.738][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:03:11.739][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:03:11.740][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-06-28 16:03:11.741][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=185696".
fscache.INFO [2025-06-28 16:03:11.743][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
sched.DEBUG[2025-06-28 16:03:11.744][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-06-28 16:03:11.745][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-06-28 16:03:11.746][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=185696".
sched.TRACE[2025-06-28 16:03:12.089][try_get_rcurl_content] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=185696).
fscache.INFO [2025-06-28 16:03:12.429][private$cache$saveContents] Save 1 contents to /home/biocbuild/.cache/R/sched.
fscache.INFO [2025-06-28 16:03:12.432][private$cache$saveContents] Save 1 contents to /home/biocbuild/.cache/R/sched.
sched.DEBUG[2025-06-28 16:03:12.433][scheduler$sendRequest] Retrieved content saved to cache.
fscache.INFO [2025-06-28 16:03:12.434][cch$saveContents] Save 1 contents to /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
biodb.DEBUG[2025-06-28 16:03:12.435][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-06-28 16:03:12.436][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-06-28 16:03:12.437][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-06-28 16:03:12.439][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:03:12.439][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:03:12.440][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:03:12.444][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:03:12.445][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:03:12.446][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:03:12.447][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:03:12.449][ef$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:12.450][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:12.451][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:12.452][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:12.453][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:12.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:12.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:12.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:12.457][ef$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:03:12.458][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:03:12.458][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:12.459][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:12.460][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:03:12.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:03:12.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:12.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:12.464][ef$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:03:12.465][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:03:12.466][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:12.467][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:12.468][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:03:12.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:03:12.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:12.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:12.472][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:03:12.473][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:03:12.474][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:12.474][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:12.475][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:03:12.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:03:12.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:12.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:12.479][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:03:12.480][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:03:12.481][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:12.482][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:12.483][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:03:12.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:03:12.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:12.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:12.487][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:03:12.488][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:03:12.488][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:12.489][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:12.490][ef$get] Asked field names are: mass.
biodb.TRACE[2025-06-28 16:03:12.491][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:12.492][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:12.493][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:12.494][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-06-28 16:03:12.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:12.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:12.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:12.498][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:12.499][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:12.500][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:12.501][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:12.502][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:12.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:12.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:12.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:12.505][ef$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:03:12.506][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:03:12.507][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:12.508][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:12.509][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:03:12.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:03:12.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:12.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:12.513][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-06-28 16:03:12.514][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:03:12.515][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:12.516][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:12.517][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-06-28 16:03:12.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:03:12.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:12.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:12.520][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:03:12.521][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:03:12.522][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:12.523][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:12.524][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:03:12.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:03:12.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:12.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:12.528][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:12.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:12.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:12.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:12.532][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:12.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:12.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:12.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:12.535][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:12.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:12.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:12.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:12.539][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:12.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:12.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:12.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:12.542][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:12.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:12.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:12.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:12.546][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:12.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:12.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:12.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:12.550][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:12.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:12.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:12.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:12.553][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:12.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:12.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:12.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:12.557][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:12.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:12.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:12.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:12.561][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:12.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:12.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:12.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:03:12.564][self$createEntryFromContent] Accession numbers: 185696.
biodb.TRACE[2025-06-28 16:03:12.565][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:12.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:12.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:12.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:12.569][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:12.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:12.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:12.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:12.572][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:12.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:12.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:12.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:03:12.576][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:03:12.577][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:03:12.578][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:03:12.582][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:03:12.583][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:03:12.592][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:03:12.593][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-28 16:03:12.594][private$loadEntries] Creating entries from ids [1]: "190762".
biodb.DEBUG[2025-06-28 16:03:12.595][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-06-28 16:03:12.596][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
biodb.DEBUG[2025-06-28 16:03:12.597][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-06-28 16:03:12.598][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-06-28 16:03:12.599][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-06-28 16:03:12.600][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-06-28 16:03:12.603][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:03:12.603][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:03:12.604][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:03:12.608][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:03:12.609][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:03:12.610][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:03:12.611][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-06-28 16:03:12.612][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=190762".
fscache.INFO [2025-06-28 16:03:12.613][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
sched.DEBUG[2025-06-28 16:03:12.614][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-06-28 16:03:12.615][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-06-28 16:03:12.616][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=190762".
sched.TRACE[2025-06-28 16:03:12.957][try_get_rcurl_content] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=190762).
fscache.INFO [2025-06-28 16:03:13.312][private$cache$saveContents] Save 1 contents to /home/biocbuild/.cache/R/sched.
fscache.INFO [2025-06-28 16:03:13.316][private$cache$saveContents] Save 1 contents to /home/biocbuild/.cache/R/sched.
sched.DEBUG[2025-06-28 16:03:13.317][scheduler$sendRequest] Retrieved content saved to cache.
fscache.INFO [2025-06-28 16:03:13.319][cch$saveContents] Save 1 contents to /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
biodb.DEBUG[2025-06-28 16:03:13.321][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-06-28 16:03:13.323][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-06-28 16:03:13.324][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-06-28 16:03:13.327][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:03:13.328][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:03:13.329][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:03:13.336][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:03:13.337][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:03:13.338][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:03:13.339][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:03:13.342][ef$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:13.343][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:13.344][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:13.345][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:13.347][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:13.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:13.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:13.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:13.351][ef$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:03:13.352][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:03:13.353][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:13.355][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:13.356][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:03:13.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:03:13.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:13.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:13.361][ef$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:03:13.362][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:03:13.363][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:13.364][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:13.365][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:03:13.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:03:13.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:13.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:13.370][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:03:13.371][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:03:13.372][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:13.373][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:13.374][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:03:13.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:03:13.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:13.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:13.378][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:03:13.379][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:03:13.380][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:13.381][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:13.382][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:03:13.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:03:13.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:13.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:13.387][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:03:13.388][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:03:13.389][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:13.390][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:13.391][ef$get] Asked field names are: mass.
biodb.TRACE[2025-06-28 16:03:13.392][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:13.393][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:13.394][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:13.395][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-06-28 16:03:13.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:13.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:13.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:13.400][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:13.401][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:13.402][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:13.403][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:13.404][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:13.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:13.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:13.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:13.409][ef$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:03:13.410][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:03:13.411][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:13.412][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:13.413][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:03:13.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:03:13.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:13.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:13.418][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-06-28 16:03:13.419][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:03:13.420][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:13.421][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:13.422][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-06-28 16:03:13.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:03:13.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:13.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:13.426][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:03:13.427][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:03:13.428][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:13.429][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:13.431][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:03:13.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:03:13.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:13.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:13.435][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:13.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:13.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:13.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:13.439][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:13.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:13.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:13.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:13.443][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:13.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:13.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:13.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:13.447][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:13.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:13.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:13.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:13.451][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:13.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:13.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:13.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:13.455][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:13.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:13.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:13.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:13.459][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:13.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:13.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:13.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:13.463][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:13.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:13.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:13.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:13.468][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:13.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:13.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:13.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:13.472][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:13.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:13.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:13.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:03:13.476][self$createEntryFromContent] Accession numbers: 190762.
biodb.TRACE[2025-06-28 16:03:13.477][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:13.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:13.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:13.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:13.481][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:13.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:13.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:13.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:13.485][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:13.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:13.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:13.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:03:13.489][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:03:13.490][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:03:13.491][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:03:13.496][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:03:13.497][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:03:13.497][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:03:13.498][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-28 16:03:13.500][private$loadEntries] Creating entries from ids [1]: "193176".
biodb.DEBUG[2025-06-28 16:03:13.501][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-06-28 16:03:13.502][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
biodb.DEBUG[2025-06-28 16:03:13.503][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-06-28 16:03:13.504][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-06-28 16:03:13.505][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-06-28 16:03:13.506][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-06-28 16:03:13.509][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:03:13.510][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:03:13.511][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:03:13.515][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:03:13.516][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:03:13.517][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:03:13.518][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-06-28 16:03:13.519][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=193176".
fscache.INFO [2025-06-28 16:03:13.521][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
sched.DEBUG[2025-06-28 16:03:13.522][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-06-28 16:03:13.523][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-06-28 16:03:13.525][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=193176".
sched.TRACE[2025-06-28 16:03:13.865][try_get_rcurl_content] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=193176).
fscache.INFO [2025-06-28 16:03:14.210][private$cache$saveContents] Save 1 contents to /home/biocbuild/.cache/R/sched.
fscache.INFO [2025-06-28 16:03:14.213][private$cache$saveContents] Save 1 contents to /home/biocbuild/.cache/R/sched.
sched.DEBUG[2025-06-28 16:03:14.215][scheduler$sendRequest] Retrieved content saved to cache.
fscache.INFO [2025-06-28 16:03:14.217][cch$saveContents] Save 1 contents to /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
biodb.DEBUG[2025-06-28 16:03:14.218][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-06-28 16:03:14.220][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-06-28 16:03:14.222][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-06-28 16:03:14.224][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:03:14.225][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:03:14.226][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:03:14.232][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:03:14.233][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:03:14.235][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:03:14.236][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:03:14.239][ef$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:14.240][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:14.242][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:14.243][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:14.244][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:14.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:14.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:14.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:14.250][ef$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:03:14.252][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:03:14.253][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:14.254][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:14.256][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:03:14.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:03:14.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:14.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:14.261][ef$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:03:14.262][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:03:14.263][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:14.265][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:14.278][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:03:14.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:03:14.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:14.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:14.290][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:03:14.291][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:03:14.292][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:14.292][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:14.294][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:03:14.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:03:14.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:14.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:14.298][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:03:14.299][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:03:14.300][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:14.301][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:14.302][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:03:14.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:03:14.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:14.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:14.306][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:03:14.307][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:03:14.308][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:14.308][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:14.310][ef$get] Asked field names are: mass.
biodb.TRACE[2025-06-28 16:03:14.311][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:14.312][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:14.312][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:14.314][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-06-28 16:03:14.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:14.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:14.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:14.317][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:14.318][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:14.319][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:14.320][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:14.321][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:14.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:14.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:14.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:14.325][ef$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:03:14.326][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:03:14.327][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:14.327][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:14.329][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:03:14.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:03:14.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:14.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:14.332][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-06-28 16:03:14.333][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:03:14.334][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:14.335][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:14.336][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-06-28 16:03:14.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:03:14.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:14.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:14.340][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:03:14.341][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:03:14.341][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:14.342][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:14.343][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:03:14.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:03:14.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:14.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:14.347][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:14.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:14.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:14.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:14.351][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:14.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:14.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:14.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:14.354][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:14.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:14.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:14.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:14.358][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:14.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:14.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:14.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:14.362][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:14.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:14.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:14.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:14.365][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:14.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:14.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:14.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:14.369][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:14.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:14.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:14.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:14.372][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:14.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:14.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:14.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:14.376][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:14.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:14.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:14.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:14.380][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:14.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:14.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:14.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:03:14.383][self$createEntryFromContent] Accession numbers: 193176.
biodb.TRACE[2025-06-28 16:03:14.384][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:14.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:14.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:14.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:14.388][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:14.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:14.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:14.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:14.392][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:14.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:14.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:14.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:03:14.395][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:03:14.396][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:03:14.397][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:03:14.401][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:03:14.402][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:03:14.403][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:03:14.404][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-28 16:03:14.405][private$loadEntries] Creating entries from ids [1]: "196395".
biodb.DEBUG[2025-06-28 16:03:14.406][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-06-28 16:03:14.407][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
biodb.DEBUG[2025-06-28 16:03:14.408][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-06-28 16:03:14.409][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-06-28 16:03:14.410][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-06-28 16:03:14.411][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-06-28 16:03:14.413][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:03:14.414][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:03:14.415][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:03:14.419][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:03:14.420][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:03:14.420][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:03:14.421][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-06-28 16:03:14.422][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=196395".
fscache.INFO [2025-06-28 16:03:14.424][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
sched.DEBUG[2025-06-28 16:03:14.425][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-06-28 16:03:14.426][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-06-28 16:03:14.427][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=196395".
sched.TRACE[2025-06-28 16:03:14.765][try_get_rcurl_content] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=196395).
fscache.INFO [2025-06-28 16:03:15.104][private$cache$saveContents] Save 1 contents to /home/biocbuild/.cache/R/sched.
fscache.INFO [2025-06-28 16:03:15.106][private$cache$saveContents] Save 1 contents to /home/biocbuild/.cache/R/sched.
sched.DEBUG[2025-06-28 16:03:15.108][scheduler$sendRequest] Retrieved content saved to cache.
fscache.INFO [2025-06-28 16:03:15.109][cch$saveContents] Save 1 contents to /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
biodb.DEBUG[2025-06-28 16:03:15.110][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-06-28 16:03:15.111][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-06-28 16:03:15.112][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-06-28 16:03:15.114][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:03:15.114][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:03:15.115][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:03:15.119][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:03:15.120][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:03:15.121][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:03:15.122][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:03:15.124][ef$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:15.125][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:15.126][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:15.127][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:15.128][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:15.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:15.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:15.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:15.132][ef$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:03:15.133][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:03:15.134][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:15.134][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:15.136][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:03:15.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:03:15.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:15.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:15.139][ef$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:03:15.140][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:03:15.141][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:15.142][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:15.143][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:03:15.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:03:15.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:15.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:15.147][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:03:15.148][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:03:15.149][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:15.150][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:15.151][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:03:15.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:03:15.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:15.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:15.154][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:03:15.155][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:03:15.156][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:15.157][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:15.158][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:03:15.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:03:15.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:15.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:15.162][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:03:15.163][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:03:15.164][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:15.165][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:15.166][ef$get] Asked field names are: mass.
biodb.TRACE[2025-06-28 16:03:15.167][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:15.168][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:15.168][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:15.169][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-06-28 16:03:15.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:15.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:15.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:15.173][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:15.174][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:15.175][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:15.176][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:15.177][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:15.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:15.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:15.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:15.181][ef$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:03:15.182][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:03:15.183][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:15.183][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:15.185][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:03:15.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:03:15.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:15.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:15.188][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-06-28 16:03:15.189][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:03:15.190][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:15.191][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:15.192][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-06-28 16:03:15.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:03:15.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:15.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:15.196][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:03:15.197][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:03:15.198][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:15.198][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:15.200][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:03:15.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:03:15.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:15.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:15.203][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:15.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:15.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:15.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:15.207][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:15.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:15.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:15.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:15.220][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:15.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:15.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:15.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:15.224][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:15.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:15.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:15.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:15.228][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:15.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:15.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:15.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:15.232][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:15.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:15.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:15.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:15.235][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:15.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:15.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:15.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:15.239][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:15.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:15.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:15.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:15.243][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:15.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:15.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:15.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:15.246][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:15.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:15.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:15.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:03:15.250][self$createEntryFromContent] Accession numbers: 196395.
biodb.TRACE[2025-06-28 16:03:15.251][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:15.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:15.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:15.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:15.254][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:15.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:15.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:15.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:15.258][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:15.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:15.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:15.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:03:15.262][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:03:15.262][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:03:15.263][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:03:15.267][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:03:15.268][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:03:15.269][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:03:15.270][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:03:15.271][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:15.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:15.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:15.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:15.275][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:15.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:15.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:15.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:15.278][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:15.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:15.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:15.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:03:15.282][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-06-28 16:03:15.283][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:03:15.284][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:03:15.285][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:03:15.289][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:03:15.290][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:03:15.291][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:03:15.292][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:03:15.293][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:15.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:15.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:15.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:15.297][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:15.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:15.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:15.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:15.300][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:03:15.301][private$selectFields]
biodb.TRACE[2025-06-28 16:03:15.302][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-06-28 16:03:15.303][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-06-28 16:03:15.304][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:03:15.305][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:15.306][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:15.306][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:15.307][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:15.308][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:15.309][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:15.310][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:15.311][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:15.312][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:03:15.313][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:03:15.314][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:15.315][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:15.315][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:15.316][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:15.317][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-06-28 16:03:15.318][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:15.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:15.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:15.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:15.322][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:15.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:15.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:15.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:15.326][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:15.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:15.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:15.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:15.330][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [7799].
biodb.DEBUG[2025-06-28 16:03:15.331][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:03:15.331][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:03:15.332][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:03:15.336][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:03:15.337][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:03:15.338][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:03:15.339][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:03:15.340][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:15.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:15.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:15.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:15.343][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:15.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:15.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:15.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:15.347][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:03:15.348][private$selectFields]
biodb.TRACE[2025-06-28 16:03:15.349][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-06-28 16:03:15.350][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-06-28 16:03:15.351][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:03:15.351][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:15.352][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:15.353][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:15.354][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:15.355][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:15.356][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:15.357][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:15.358][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:15.359][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:03:15.360][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:03:15.360][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:15.361][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:15.362][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:15.363][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:15.364][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-06-28 16:03:15.365][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:15.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:15.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:15.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:15.369][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:15.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:15.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:15.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:15.372][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:15.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:15.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:15.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:15.376][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [71954].
biodb.DEBUG[2025-06-28 16:03:15.377][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:03:15.378][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:03:15.379][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:03:15.383][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:03:15.384][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:03:15.385][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:03:15.385][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:03:15.386][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:15.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:15.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:15.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:15.390][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:15.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:15.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:15.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:15.394][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:03:15.395][private$selectFields]
biodb.TRACE[2025-06-28 16:03:15.395][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-06-28 16:03:15.396][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-06-28 16:03:15.397][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:03:15.398][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:15.399][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:15.400][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:15.401][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:15.402][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:15.403][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:15.404][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:15.404][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:15.405][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:03:15.406][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:03:15.407][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:15.408][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:15.409][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:15.410][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:15.411][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-06-28 16:03:15.412][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:15.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:15.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:15.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:15.415][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:15.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:15.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:15.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:15.419][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:15.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:15.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:15.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:15.423][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [197612].
biodb.DEBUG[2025-06-28 16:03:15.424][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-06-28 16:03:15.425][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-06-28 16:03:15.442][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:03:15.442][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:03:15.443][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:03:15.447][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:03:15.448][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:03:15.449][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:03:15.449][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-06-28 16:03:15.452][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.5*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-06-28 16:03:15.454][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-06-28 16:03:15.460][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/b616afd034ed5d04cbb32f1e92c778e7.content.
sched.DEBUG[2025-06-28 16:03:15.461][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-06-28 16:03:15.466][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:03:15.472][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:03:15.473][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:03:15.478][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:03:15.479][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:03:15.479][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:03:15.480][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:03:15.481][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:15.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:15.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:15.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:15.485][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:15.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:15.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:15.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:15.489][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:15.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:15.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:15.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:03:15.492][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:03:15.493][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:03:15.494][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:03:15.498][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:03:15.498][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:03:15.499][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:03:15.500][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:03:15.501][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:15.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:15.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:15.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:15.505][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:15.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:15.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:15.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:15.508][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:15.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:15.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:15.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:03:15.512][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:03:15.513][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:03:15.514][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:03:15.517][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:03:15.518][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:03:15.519][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:03:15.520][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:03:15.521][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:15.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:15.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:15.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:15.524][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:15.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:15.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:15.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:15.528][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:15.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:15.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:15.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:03:15.532][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:03:15.532][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:03:15.533][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:03:15.537][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:03:15.538][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:03:15.539][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:03:15.539][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:03:15.540][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:15.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:15.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:15.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:15.544][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:15.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:15.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:15.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:15.548][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:15.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:15.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:15.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:03:15.551][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-06-28 16:03:15.553][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:03:15.554][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:03:15.554][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:03:15.558][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:03:15.559][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:03:15.560][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:03:15.561][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:03:15.562][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:15.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:15.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:15.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:15.565][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:15.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:15.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:15.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:15.569][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:03:15.570][private$selectFields]
biodb.TRACE[2025-06-28 16:03:15.571][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-06-28 16:03:15.572][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-06-28 16:03:15.572][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:03:15.573][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:15.574][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:15.575][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:15.576][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:15.577][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:15.578][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:15.579][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:15.580][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:15.581][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:03:15.581][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:03:15.582][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:15.583][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:15.584][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:15.585][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:15.586][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-06-28 16:03:15.587][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:15.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:15.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:15.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:15.591][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:15.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:15.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:15.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:15.594][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:15.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:15.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:15.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:15.598][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [3014].
biodb.DEBUG[2025-06-28 16:03:15.599][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:03:15.600][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:03:15.601][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:03:15.605][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:03:15.606][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:03:15.606][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:03:15.607][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:03:15.608][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:15.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:15.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:15.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:15.612][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:15.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:15.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:15.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:15.616][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:03:15.616][private$selectFields]
biodb.TRACE[2025-06-28 16:03:15.617][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-06-28 16:03:15.618][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-06-28 16:03:15.619][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:03:15.620][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:15.621][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:15.622][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:15.623][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:15.624][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:15.625][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:15.625][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:15.626][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:15.627][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:03:15.628][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:03:15.629][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:15.630][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:15.631][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:15.632][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:15.633][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-06-28 16:03:15.634][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:15.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:15.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:15.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:15.637][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:15.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:15.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:15.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:15.641][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:15.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:15.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:15.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:15.645][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [8021].
biodb.DEBUG[2025-06-28 16:03:15.646][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:03:15.647][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:03:15.647][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:03:15.651][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:03:15.652][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:03:15.653][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:03:15.654][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:03:15.655][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:15.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:15.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:15.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:15.666][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:15.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:15.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:15.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:15.670][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:03:15.671][private$selectFields]
biodb.TRACE[2025-06-28 16:03:15.672][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-06-28 16:03:15.673][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-06-28 16:03:15.674][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:03:15.675][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:15.677][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:15.678][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:15.679][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:15.680][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:15.681][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:15.682][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:15.683][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:15.684][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:03:15.685][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:03:15.686][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:15.687][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:15.688][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:15.689][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:15.690][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-06-28 16:03:15.691][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:15.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:15.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:15.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:15.695][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:15.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:15.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:15.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:15.699][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:15.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:15.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:15.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:15.704][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [30382].
biodb.DEBUG[2025-06-28 16:03:15.705][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-06-28 16:03:15.706][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-06-28 16:03:15.709][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:03:15.710][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:03:15.711][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:03:15.717][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:03:15.718][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:03:15.719][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:03:15.720][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-06-28 16:03:15.723][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.4*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-06-28 16:03:15.727][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-06-28 16:03:15.733][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/4da83335ec00090f05f0a5128074d1f6.content.
sched.DEBUG[2025-06-28 16:03:15.734][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-06-28 16:03:15.738][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:03:15.739][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:03:15.754][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:03:15.762][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:03:15.763][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:03:15.764][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:03:15.765][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:03:15.766][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:15.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:15.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:15.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:15.771][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:15.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:15.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:15.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:15.774][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:15.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:15.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:15.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:03:15.778][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:03:15.779][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:03:15.780][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:03:15.784][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:03:15.785][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:03:15.786][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:03:15.787][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:03:15.788][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:15.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:15.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:15.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:15.792][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:15.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:15.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:15.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:15.796][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:15.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:15.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:15.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:03:15.800][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:03:15.801][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:03:15.802][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:03:15.806][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:03:15.807][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:03:15.808][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:03:15.808][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:03:15.810][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:15.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:15.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:15.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:15.813][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:15.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:15.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:15.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:15.817][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:15.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:15.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:15.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:03:15.821][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:03:15.822][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:03:15.823][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:03:15.827][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:03:15.828][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:03:15.829][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:03:15.830][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:03:15.831][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:15.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:15.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:15.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:15.835][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:15.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:15.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:15.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:15.839][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:15.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:15.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:15.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:03:15.843][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:03:15.844][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:03:15.845][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:03:15.849][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:03:15.850][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:03:15.851][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:03:15.852][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:03:15.853][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:15.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:15.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:15.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:15.857][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:15.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:15.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:15.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:15.861][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:15.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:15.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:15.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:03:15.865][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:03:15.866][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:03:15.867][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:03:15.871][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:03:15.872][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:03:15.873][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:03:15.874][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:03:15.875][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:15.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:15.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:15.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:15.879][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:15.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:15.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:15.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:15.883][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:15.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:15.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:15.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:03:15.887][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:03:15.888][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:03:15.889][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:03:15.893][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:03:15.894][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:03:15.895][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:03:15.895][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:03:15.897][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:15.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:15.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:15.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:15.900][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:15.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:15.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:15.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:15.904][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:15.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:15.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:15.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:03:15.908][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-06-28 16:03:15.910][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:03:15.911][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:03:15.912][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:03:15.916][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:03:15.917][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:03:15.918][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:03:15.919][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:03:15.920][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:15.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:15.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:15.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:15.924][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:15.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:15.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:15.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:15.928][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:03:15.929][private$selectFields]
biodb.TRACE[2025-06-28 16:03:15.930][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-06-28 16:03:15.931][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-06-28 16:03:15.932][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:03:15.933][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:15.934][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:15.935][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:15.935][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:15.936][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:15.938][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:15.938][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:15.939][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:15.940][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:03:15.941][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:03:15.942][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:15.943][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:15.944][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:15.945][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:15.946][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-06-28 16:03:15.947][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:15.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:15.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:15.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:15.951][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:15.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:15.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:15.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:15.955][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:15.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:15.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:15.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:15.959][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [65530].
biodb.DEBUG[2025-06-28 16:03:15.960][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:03:15.961][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:03:15.962][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:03:15.966][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:03:15.967][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:03:15.968][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:03:15.968][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:03:15.970][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:15.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:15.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:15.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:15.973][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:15.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:15.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:15.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:15.977][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:03:15.978][private$selectFields]
biodb.TRACE[2025-06-28 16:03:15.979][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-06-28 16:03:15.979][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-06-28 16:03:15.980][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:03:15.981][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:15.982][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:15.983][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:15.984][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:15.985][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:15.986][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:15.987][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:15.988][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:15.988][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:03:15.989][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:03:15.990][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:15.991][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:15.992][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:15.993][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:15.994][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-06-28 16:03:15.995][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:15.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:15.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:15.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:15.998][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:15.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:16.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:16.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:16.002][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:16.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:16.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:16.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:16.006][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [90204].
biodb.DEBUG[2025-06-28 16:03:16.007][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:03:16.008][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:03:16.009][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:03:16.013][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:03:16.014][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:03:16.015][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:03:16.016][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:03:16.017][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:16.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:16.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:16.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:16.026][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:16.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:16.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:16.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:16.029][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:03:16.030][private$selectFields]
biodb.TRACE[2025-06-28 16:03:16.031][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-06-28 16:03:16.032][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-06-28 16:03:16.033][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:03:16.034][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:16.035][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:16.036][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:16.036][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:16.037][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:16.038][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:16.039][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:16.040][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:16.041][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:03:16.042][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:03:16.043][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:16.044][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:16.045][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:16.045][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:16.046][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-06-28 16:03:16.047][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:16.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:16.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:16.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:16.051][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:16.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:16.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:16.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:16.054][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:16.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:16.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:16.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:16.058][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [132793].
biodb.DEBUG[2025-06-28 16:03:16.059][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-06-28 16:03:16.060][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-06-28 16:03:16.062][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:03:16.062][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:03:16.063][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:03:16.067][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:03:16.068][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:03:16.069][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:03:16.070][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-06-28 16:03:16.072][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.1*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-06-28 16:03:16.075][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-06-28 16:03:16.076][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/d4eeadefe2fd6c7a45a5c47263c29105.content.
sched.DEBUG[2025-06-28 16:03:16.077][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-06-28 16:03:16.079][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:03:16.080][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:03:16.081][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:03:16.085][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:03:16.086][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:03:16.087][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:03:16.087][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:03:16.088][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:16.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:16.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:16.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:16.092][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:16.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:16.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:16.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:16.096][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:16.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:16.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:16.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:03:16.099][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:03:16.100][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:03:16.101][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:03:16.105][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:03:16.106][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:03:16.106][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:03:16.107][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:03:16.108][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:16.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:16.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:16.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:16.112][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:16.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:16.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:16.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:16.116][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:16.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:16.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:16.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
sched.DEBUG[2025-06-28 16:03:16.120][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.2*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-06-28 16:03:16.122][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-06-28 16:03:16.125][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/8a1fe476d9f07138803c04b6da6259b3.content.
sched.DEBUG[2025-06-28 16:03:16.126][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-06-28 16:03:16.128][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:03:16.128][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:03:16.129][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:03:16.133][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:03:16.134][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:03:16.135][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:03:16.136][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:03:16.137][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:16.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:16.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:16.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:16.141][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:16.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:16.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:16.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:16.144][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:16.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:16.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:16.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:03:16.148][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:03:16.149][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:03:16.149][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:03:16.153][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:03:16.154][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:03:16.155][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:03:16.156][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:03:16.157][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:16.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:16.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:16.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:16.161][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:16.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:16.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:16.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:16.164][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:16.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:16.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:16.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:03:16.168][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:03:16.169][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:03:16.170][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:03:16.174][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:03:16.175][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:03:16.176][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:03:16.176][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:03:16.177][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:16.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:16.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:16.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:16.181][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:16.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:16.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:16.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:16.185][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:16.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:16.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:16.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:03:16.189][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-06-28 16:03:16.190][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:03:16.191][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:03:16.192][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:03:16.196][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:03:16.197][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:03:16.197][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:03:16.198][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:03:16.199][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:16.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:16.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:16.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:16.203][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:16.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:16.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:16.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:16.207][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:03:16.207][private$selectFields]
biodb.TRACE[2025-06-28 16:03:16.208][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-06-28 16:03:16.209][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-06-28 16:03:16.210][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:03:16.211][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:16.212][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:16.213][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:16.214][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:16.215][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:16.216][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:16.216][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:16.217][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:16.218][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:03:16.219][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:03:16.220][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:16.221][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:16.222][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:16.223][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:16.224][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-06-28 16:03:16.225][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:16.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:16.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:16.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:16.228][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:16.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:16.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:16.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:16.232][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:16.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:16.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:16.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:16.236][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [51836].
biodb.DEBUG[2025-06-28 16:03:16.237][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:03:16.237][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:03:16.238][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:03:16.243][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:03:16.243][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:03:16.244][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:03:16.245][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:03:16.246][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:16.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:16.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:16.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:16.250][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:16.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:16.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:16.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:16.253][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:03:16.254][private$selectFields]
biodb.TRACE[2025-06-28 16:03:16.255][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-06-28 16:03:16.256][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-06-28 16:03:16.257][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:03:16.258][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:16.259][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:16.260][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:16.261][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:16.261][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:16.262][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:16.263][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:16.264][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:16.265][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:03:16.266][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:03:16.267][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:16.268][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:16.274][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:16.275][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:16.276][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-06-28 16:03:16.277][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:16.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:16.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:16.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:16.281][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:16.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:16.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:16.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:16.285][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:16.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:16.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:16.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:16.289][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [51837].
biodb.DEBUG[2025-06-28 16:03:16.290][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:03:16.290][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:03:16.291][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:03:16.295][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:03:16.296][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:03:16.297][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:03:16.298][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:03:16.299][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:16.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:16.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:16.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:16.303][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:16.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:16.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:16.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:16.306][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:03:16.307][private$selectFields]
biodb.TRACE[2025-06-28 16:03:16.308][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-06-28 16:03:16.309][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-06-28 16:03:16.310][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:03:16.311][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:16.311][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:16.312][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:16.313][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:16.314][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:16.315][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:16.316][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:16.317][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:16.318][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:03:16.319][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:03:16.319][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:16.320][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:16.321][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:16.322][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:16.323][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-06-28 16:03:16.324][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:16.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:16.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:16.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:16.328][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:16.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:16.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:16.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:16.331][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:16.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:16.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:16.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:16.335][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [132205].
biodb.DEBUG[2025-06-28 16:03:16.336][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-06-28 16:03:16.337][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-06-28 16:03:16.354][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:03:16.355][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:03:16.356][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:03:16.359][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:03:16.360][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:03:16.361][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:03:16.362][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-06-28 16:03:16.364][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-06-28 16:03:16.367][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-06-28 16:03:16.368][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/8fc54eee7e982ce554bee8000d8203f7.content.
sched.DEBUG[2025-06-28 16:03:16.369][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-06-28 16:03:16.372][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:03:16.372][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:03:16.373][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:03:16.377][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:03:16.378][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:03:16.379][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:03:16.380][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:03:16.381][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:16.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:16.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:16.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:16.385][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:16.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:16.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:16.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:16.388][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:16.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:16.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:16.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
sched.DEBUG[2025-06-28 16:03:16.393][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-06-28 16:03:16.395][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-06-28 16:03:16.397][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/6def615835d7c1dfccd5a5f135bd2f9d.content.
sched.DEBUG[2025-06-28 16:03:16.398][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-06-28 16:03:16.400][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:03:16.401][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:03:16.402][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:03:16.406][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:03:16.407][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:03:16.407][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:03:16.408][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:03:16.409][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:16.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:16.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:16.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:16.413][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:16.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:16.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:16.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:16.417][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:16.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:16.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:16.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:03:16.420][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:03:16.421][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:03:16.422][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:03:16.426][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:03:16.427][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:03:16.428][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:03:16.429][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:03:16.430][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:16.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:16.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:16.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:16.433][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:16.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:16.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:16.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:16.437][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:16.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:16.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:16.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:03:16.441][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-06-28 16:03:16.442][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:03:16.443][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:03:16.444][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:03:16.448][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:03:16.449][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:03:16.450][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:03:16.450][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:03:16.452][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:16.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:16.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:16.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:16.455][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:16.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:16.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:16.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:16.459][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:03:16.460][private$selectFields]
biodb.TRACE[2025-06-28 16:03:16.461][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-06-28 16:03:16.461][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-06-28 16:03:16.462][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:03:16.463][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:16.464][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:16.465][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:16.466][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:16.467][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:16.468][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:16.469][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:16.470][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:16.470][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:03:16.471][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:03:16.472][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:16.473][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:16.474][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:16.475][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:16.476][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-06-28 16:03:16.477][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:16.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:16.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:16.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:16.480][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:16.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:16.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:16.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:16.484][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:16.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:16.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:16.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:16.488][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [192288].
biodb.DEBUG[2025-06-28 16:03:16.489][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:03:16.490][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:03:16.491][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:03:16.495][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:03:16.496][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:03:16.497][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:03:16.497][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:03:16.498][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:16.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:16.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:16.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:16.502][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:16.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:16.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:16.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:16.506][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:03:16.507][private$selectFields]
biodb.TRACE[2025-06-28 16:03:16.508][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-06-28 16:03:16.508][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-06-28 16:03:16.509][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:03:16.510][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:16.511][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:16.512][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:16.513][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:16.514][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:16.515][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:16.516][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:16.517][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:16.517][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:03:16.518][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:03:16.519][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:16.525][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:16.527][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:16.528][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:16.529][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-06-28 16:03:16.530][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:16.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:16.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:16.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:16.534][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:16.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:16.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:16.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:16.537][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:16.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:16.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:16.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:16.541][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2025-06-28 16:03:16.542][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:03:16.543][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:03:16.544][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:03:16.548][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:03:16.549][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:03:16.550][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:03:16.550][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:03:16.551][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:16.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:16.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:16.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:16.555][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:16.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:16.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:16.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:16.559][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:03:16.559][private$selectFields]
biodb.TRACE[2025-06-28 16:03:16.560][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-06-28 16:03:16.561][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-06-28 16:03:16.562][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:03:16.563][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:16.564][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:16.565][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:16.566][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:16.566][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:16.567][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:16.568][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:16.569][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:16.570][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:03:16.571][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:03:16.572][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:16.573][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:16.574][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:16.574][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:16.575][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-06-28 16:03:16.576][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:16.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:16.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:16.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:16.580][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:16.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:16.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:16.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:16.583][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:16.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:16.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:16.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:16.587][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [209892].
biodb.DEBUG[2025-06-28 16:03:16.588][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-06-28 16:03:16.589][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-06-28 16:03:16.591][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:03:16.592][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:03:16.593][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:03:16.597][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:03:16.597][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:03:16.598][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:03:16.599][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-06-28 16:03:16.601][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-06-28 16:03:16.604][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-06-28 16:03:16.606][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/013adb879cee6d4257067df9ba0a8c7b.content.
sched.DEBUG[2025-06-28 16:03:16.607][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-06-28 16:03:16.609][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:03:16.609][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:03:16.610][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:03:16.614][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:03:16.615][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:03:16.616][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:03:16.617][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:03:16.618][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:16.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:16.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:16.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:16.621][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:16.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:16.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:16.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:16.625][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:16.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:16.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:16.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:03:16.629][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:03:16.629][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:03:16.630][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:03:16.634][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:03:16.635][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:03:16.636][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:03:16.637][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:03:16.638][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:16.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:16.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:16.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:16.642][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:16.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:16.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:16.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:16.645][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:16.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:16.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:16.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
sched.DEBUG[2025-06-28 16:03:16.650][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.63*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-06-28 16:03:16.652][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-06-28 16:03:16.655][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/d37a10a1f6afae785eb4d1943c254641.content.
sched.DEBUG[2025-06-28 16:03:16.656][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-06-28 16:03:16.658][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:03:16.659][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:03:16.660][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:03:16.664][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:03:16.665][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:03:16.666][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:03:16.666][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:03:16.667][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:16.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:16.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:16.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:16.671][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:16.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:16.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:16.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:16.675][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:16.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:16.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:16.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:03:16.678][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:03:16.679][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:03:16.680][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:03:16.684][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:03:16.685][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:03:16.686][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:03:16.687][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:03:16.688][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:16.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:16.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:16.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:16.691][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:16.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:16.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:16.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:16.695][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:16.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:16.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:16.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:03:16.699][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:03:16.700][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:03:16.700][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:03:16.705][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:03:16.706][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:03:16.706][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:03:16.707][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:03:16.708][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:16.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:16.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:16.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:16.712][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:16.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:16.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:16.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:16.716][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:16.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:16.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:16.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:03:16.719][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-06-28 16:03:16.721][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:03:16.722][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:03:16.723][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:03:16.727][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:03:16.728][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:03:16.728][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:03:16.729][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:03:16.730][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:16.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:16.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:16.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:16.734][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:16.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:16.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:16.737][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:16.738][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:03:16.739][private$selectFields]
biodb.TRACE[2025-06-28 16:03:16.739][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-06-28 16:03:16.740][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-06-28 16:03:16.741][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:03:16.742][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:16.743][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:16.744][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:16.745][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:16.746][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:16.747][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:16.748][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:16.749][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:16.749][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:03:16.750][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:03:16.751][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:16.752][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:16.753][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:16.754][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:16.755][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-06-28 16:03:16.756][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:16.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:16.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:16.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:16.759][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:16.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:16.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:16.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:16.763][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:16.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:16.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:16.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:16.767][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2025-06-28 16:03:16.768][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:03:16.769][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:03:16.770][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:03:16.779][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:03:16.780][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:03:16.781][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:03:16.782][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:03:16.784][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:16.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:16.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:16.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:16.787][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:16.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:16.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:16.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:16.791][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:03:16.792][private$selectFields]
biodb.TRACE[2025-06-28 16:03:16.793][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-06-28 16:03:16.794][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-06-28 16:03:16.794][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:03:16.795][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:16.796][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:16.797][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:16.798][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:16.799][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:16.800][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:16.801][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:16.802][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:16.802][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:03:16.803][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:03:16.804][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:16.805][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:16.806][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:16.807][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:16.808][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-06-28 16:03:16.809][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:16.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:16.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:16.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:16.812][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:16.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:16.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:16.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:16.816][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:16.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:16.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:16.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:16.820][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [16587].
biodb.DEBUG[2025-06-28 16:03:16.821][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:03:16.822][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:03:16.822][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:03:16.827][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:03:16.827][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:03:16.828][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:03:16.829][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:03:16.830][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:16.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:16.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:16.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:16.834][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:16.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:16.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:16.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:16.837][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:03:16.838][private$selectFields]
biodb.TRACE[2025-06-28 16:03:16.839][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-06-28 16:03:16.840][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-06-28 16:03:16.841][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:03:16.842][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:16.843][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:16.843][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:16.844][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:16.845][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:16.846][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:16.847][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:16.848][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:16.849][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:03:16.850][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:03:16.851][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:16.852][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:16.852][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:16.853][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:16.854][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-06-28 16:03:16.855][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:16.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:16.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:16.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:16.859][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:16.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:16.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:16.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:16.862][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:16.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:16.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:16.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:16.866][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [19804].
biodb.DEBUG[2025-06-28 16:03:16.867][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-06-28 16:03:16.868][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-06-28 16:03:16.870][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:03:16.871][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:03:16.871][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:03:16.876][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:03:16.876][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:03:16.877][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:03:16.878][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-06-28 16:03:16.881][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-06-28 16:03:16.883][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-06-28 16:03:16.885][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/618204bc3e9a685033db1d9be9d78d44.content.
sched.DEBUG[2025-06-28 16:03:16.886][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-06-28 16:03:16.888][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:03:16.889][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:03:16.890][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:03:16.894][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:03:16.895][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:03:16.896][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:03:16.897][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:03:16.898][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:16.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:16.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:16.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:16.902][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:16.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:16.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:16.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:16.905][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:16.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:16.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:16.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:03:16.909][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:03:16.910][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:03:16.911][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:03:16.915][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:03:16.916][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:03:16.916][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:03:16.917][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:03:16.918][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:16.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:16.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:16.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:16.922][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:16.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:16.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:16.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:16.926][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:16.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:16.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:16.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:03:16.929][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:03:16.930][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:03:16.931][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:03:16.935][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:03:16.936][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:03:16.937][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:03:16.938][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:03:16.939][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:16.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:16.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:16.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:16.943][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:16.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:16.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:16.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:16.946][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:16.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:16.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:16.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:03:16.950][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:03:16.951][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:03:16.952][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:03:16.956][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:03:16.957][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:03:16.958][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:03:16.959][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:03:16.960][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:16.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:16.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:16.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:16.963][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:16.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:16.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:16.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:16.967][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:16.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:16.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:16.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:03:16.971][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:03:16.972][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:03:16.973][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:03:16.977][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:03:16.978][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:03:16.978][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:03:16.979][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:03:16.980][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:16.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:16.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:16.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:16.984][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:16.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:16.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:16.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:16.988][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:16.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:16.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:16.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:03:16.991][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:03:16.992][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:03:16.993][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:03:16.997][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:03:16.998][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:03:16.999][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:03:16.999][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:03:17.000][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:17.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:17.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:17.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:17.004][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:17.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:17.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:17.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:17.008][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:17.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:17.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:17.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:03:17.011][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:03:17.012][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:03:17.013][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:03:17.017][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:03:17.018][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:03:17.019][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:03:17.020][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:03:17.021][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:17.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:17.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:17.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:17.024][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:17.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:17.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:17.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:17.033][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:17.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:17.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:17.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:03:17.037][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:03:17.038][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:03:17.039][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:03:17.043][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:03:17.044][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:03:17.045][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:03:17.045][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:03:17.046][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:17.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:17.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:17.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:17.050][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:17.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:17.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:17.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:17.054][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:17.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:17.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:17.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
sched.DEBUG[2025-06-28 16:03:17.058][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-06-28 16:03:17.060][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-06-28 16:03:17.062][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/e0540b0a9d3ba75ce1522ce23f76319e.content.
sched.DEBUG[2025-06-28 16:03:17.063][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-06-28 16:03:17.065][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:03:17.066][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:03:17.067][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:03:17.071][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:03:17.072][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:03:17.072][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:03:17.073][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:03:17.074][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:17.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:17.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:17.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:17.078][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:17.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:17.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:17.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:17.081][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:17.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:17.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:17.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:03:17.085][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:03:17.086][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:03:17.087][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:03:17.091][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:03:17.091][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:03:17.092][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:03:17.093][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:03:17.094][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:17.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:17.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:17.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:17.098][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:17.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:17.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:17.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:17.101][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:17.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:17.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:17.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:03:17.105][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:03:17.106][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:03:17.107][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:03:17.111][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:03:17.112][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:03:17.112][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:03:17.113][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:03:17.114][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:17.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:17.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:17.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:17.118][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:17.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:17.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:17.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:17.121][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:17.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:17.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:17.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:03:17.125][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-06-28 16:03:17.126][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:03:17.127][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:03:17.128][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:03:17.132][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:03:17.133][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:03:17.134][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:03:17.135][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:03:17.136][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:17.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:17.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:17.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:17.139][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:17.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:17.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:17.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:17.143][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:03:17.144][private$selectFields]
biodb.TRACE[2025-06-28 16:03:17.145][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-06-28 16:03:17.146][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-06-28 16:03:17.146][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:03:17.147][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:17.148][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:17.149][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:17.150][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:17.151][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:17.152][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:17.153][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:17.154][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:17.155][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:03:17.155][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:03:17.156][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:17.157][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:17.158][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:17.159][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:17.160][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-06-28 16:03:17.161][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:17.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:17.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:17.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:17.165][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:17.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:17.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:17.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:17.168][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:17.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:17.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:17.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:17.172][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [7799].
biodb.DEBUG[2025-06-28 16:03:17.173][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:03:17.174][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:03:17.175][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:03:17.179][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:03:17.180][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:03:17.180][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:03:17.181][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:03:17.182][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:17.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:17.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:17.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:17.186][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:17.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:17.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:17.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:17.190][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:03:17.190][private$selectFields]
biodb.TRACE[2025-06-28 16:03:17.191][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-06-28 16:03:17.192][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-06-28 16:03:17.193][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:03:17.194][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:17.195][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:17.196][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:17.197][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:17.197][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:17.198][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:17.199][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:17.200][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:17.201][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:03:17.202][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:03:17.203][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:17.204][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:17.205][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:17.206][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:17.206][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-06-28 16:03:17.207][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:17.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:17.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:17.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:17.211][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:17.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:17.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:17.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:17.215][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:17.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:17.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:17.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:17.219][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [71954].
biodb.DEBUG[2025-06-28 16:03:17.220][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:03:17.220][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:03:17.221][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:03:17.225][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:03:17.226][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:03:17.227][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:03:17.228][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:03:17.229][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:17.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:17.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:17.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:17.233][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:17.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:17.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:17.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:17.236][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:03:17.237][private$selectFields]
biodb.TRACE[2025-06-28 16:03:17.238][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-06-28 16:03:17.239][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-06-28 16:03:17.240][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:03:17.240][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:17.241][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:17.242][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:17.243][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:17.244][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:17.245][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:17.246][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:17.247][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:17.248][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:03:17.249][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:03:17.249][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:17.250][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:17.251][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:17.252][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:17.253][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-06-28 16:03:17.254][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:17.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:17.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:17.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:17.258][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:17.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:17.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:17.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:17.261][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:17.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:17.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:17.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:17.265][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [197612].
biodb.DEBUG[2025-06-28 16:03:17.266][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-06-28 16:03:17.267][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-06-28 16:03:17.290][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:03:17.291][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:03:17.291][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:03:17.295][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:03:17.296][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:03:17.297][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:03:17.297][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-06-28 16:03:17.300][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.7*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-06-28 16:03:17.302][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-06-28 16:03:17.305][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/52d6fe8916b2b36c38f3e0a454a0ac24.content.
sched.DEBUG[2025-06-28 16:03:17.306][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-06-28 16:03:17.308][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:03:17.309][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:03:17.310][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:03:17.313][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:03:17.314][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:03:17.315][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:03:17.316][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:03:17.317][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:17.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:17.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:17.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:17.320][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:17.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:17.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:17.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:17.324][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:17.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:17.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:17.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:03:17.328][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:03:17.328][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:03:17.329][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:03:17.333][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:03:17.334][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:03:17.335][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:03:17.335][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:03:17.336][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:17.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:17.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:17.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:17.340][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:17.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:17.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:17.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:17.344][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:17.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:17.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:17.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:03:17.347][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:03:17.348][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:03:17.349][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:03:17.353][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:03:17.353][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:03:17.354][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:03:17.355][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:03:17.356][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:17.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:17.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:17.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:17.360][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:17.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:17.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:17.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:17.363][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:17.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:17.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:17.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:03:17.367][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:03:17.368][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:03:17.368][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:03:17.372][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:03:17.373][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:03:17.374][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:03:17.375][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:03:17.376][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:17.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:17.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:17.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:17.379][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:17.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:17.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:17.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:17.383][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:17.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:17.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:17.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:03:17.387][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:03:17.388][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:03:17.388][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:03:17.392][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:03:17.393][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:03:17.394][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:03:17.395][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:03:17.396][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:17.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:17.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:17.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:17.399][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:17.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:17.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:17.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:17.403][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:17.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:17.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:17.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:03:17.407][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:03:17.407][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:03:17.408][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:03:17.412][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:03:17.413][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:03:17.414][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:03:17.415][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:03:17.416][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:17.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:17.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:17.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:17.419][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:17.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:17.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:17.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:17.423][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:17.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:17.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:17.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:03:17.427][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-06-28 16:03:17.428][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:03:17.429][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:03:17.430][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:03:17.434][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:03:17.434][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:03:17.435][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:03:17.436][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:03:17.437][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:17.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:17.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:17.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:17.441][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:17.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:17.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:17.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:17.444][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:03:17.445][private$selectFields]
biodb.TRACE[2025-06-28 16:03:17.446][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-06-28 16:03:17.447][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-06-28 16:03:17.448][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:03:17.449][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:17.450][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:17.451][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:17.451][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:17.452][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:17.453][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:17.454][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:17.455][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:17.456][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:03:17.457][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:03:17.458][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:17.459][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:17.459][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:17.460][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:17.461][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-06-28 16:03:17.462][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:17.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:17.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:17.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:17.466][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:17.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:17.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:17.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:17.469][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:17.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:17.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:17.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:17.473][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2025-06-28 16:03:17.474][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:03:17.475][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:03:17.476][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:03:17.480][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:03:17.481][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:03:17.482][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:03:17.482][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:03:17.484][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:17.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:17.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:17.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:17.487][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:17.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:17.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:17.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:17.491][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:03:17.492][private$selectFields]
biodb.TRACE[2025-06-28 16:03:17.492][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-06-28 16:03:17.493][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-06-28 16:03:17.494][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:03:17.495][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:17.496][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:17.497][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:17.498][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:17.499][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:17.500][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:17.501][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:17.501][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:17.502][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:03:17.503][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:03:17.504][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:17.505][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:17.506][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:17.507][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:17.508][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-06-28 16:03:17.509][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:17.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:17.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:17.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:17.512][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:17.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:17.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:17.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:17.516][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:17.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:17.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:17.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:17.520][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [28243].
biodb.DEBUG[2025-06-28 16:03:17.526][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:03:17.527][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:03:17.528][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:03:17.533][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:03:17.534][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:03:17.534][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:03:17.535][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:03:17.536][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:17.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:17.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:17.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:17.540][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:17.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:17.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:17.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:17.544][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:03:17.544][private$selectFields]
biodb.TRACE[2025-06-28 16:03:17.545][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-06-28 16:03:17.546][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-06-28 16:03:17.547][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:03:17.548][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:17.549][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:17.550][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:17.551][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:17.552][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:17.552][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:17.553][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:17.554][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:17.555][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:03:17.556][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:03:17.557][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:17.558][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:17.559][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:17.559][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:17.560][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-06-28 16:03:17.561][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:17.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:17.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:17.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:17.565][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:17.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:17.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:17.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:17.568][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:17.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:17.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:17.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:17.572][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [78144].
biodb.DEBUG[2025-06-28 16:03:17.573][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-06-28 16:03:17.574][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-06-28 16:03:17.576][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:03:17.577][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:03:17.578][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:03:17.582][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:03:17.583][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:03:17.583][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:03:17.584][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-06-28 16:03:17.587][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.6*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-06-28 16:03:17.589][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-06-28 16:03:17.595][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/a1f794ee7474001c459ff6d20307d75d.content.
sched.DEBUG[2025-06-28 16:03:17.596][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-06-28 16:03:17.600][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:03:17.600][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:03:17.601][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:03:17.605][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:03:17.606][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:03:17.607][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:03:17.608][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:03:17.609][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:17.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:17.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:17.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:17.613][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:17.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:17.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:17.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:17.616][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:17.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:17.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:17.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:03:17.620][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:03:17.621][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:03:17.622][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:03:17.626][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:03:17.627][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:03:17.627][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:03:17.628][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:03:17.629][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:17.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:17.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:17.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:17.633][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:17.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:17.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:17.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:17.637][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:17.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:17.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:17.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:03:17.640][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:03:17.641][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:03:17.642][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:03:17.646][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:03:17.647][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:03:17.648][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:03:17.649][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:03:17.650][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:17.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:17.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:17.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:17.653][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:17.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:17.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:17.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:17.657][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:17.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:17.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:17.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:03:17.661][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-06-28 16:03:17.662][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:03:17.663][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:03:17.664][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:03:17.668][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:03:17.669][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:03:17.670][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:03:17.670][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:03:17.671][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:17.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:17.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:17.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:17.675][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:17.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:17.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:17.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:17.679][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:03:17.680][private$selectFields]
biodb.TRACE[2025-06-28 16:03:17.680][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-06-28 16:03:17.681][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-06-28 16:03:17.682][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:03:17.683][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:17.684][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:17.685][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:17.686][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:17.687][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:17.688][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:17.689][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:17.689][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:17.690][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:03:17.691][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:03:17.692][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:17.693][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:17.694][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:17.695][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:17.696][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-06-28 16:03:17.697][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:17.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:17.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:17.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:17.700][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:17.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:17.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:17.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:17.704][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:17.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:17.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:17.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:17.708][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2025-06-28 16:03:17.709][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:03:17.710][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:03:17.710][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:03:17.715][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:03:17.715][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:03:17.716][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:03:17.717][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:03:17.718][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:17.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:17.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:17.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:17.722][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:17.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:17.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:17.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:17.725][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:03:17.726][private$selectFields]
biodb.TRACE[2025-06-28 16:03:17.727][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-06-28 16:03:17.728][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-06-28 16:03:17.729][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:03:17.730][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:17.731][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:17.732][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:17.732][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:17.733][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:17.734][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:17.735][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:17.736][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:17.737][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:03:17.738][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:03:17.739][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:17.740][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:17.741][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:17.741][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:17.742][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-06-28 16:03:17.743][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:17.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:17.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:17.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:17.747][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:17.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:17.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:17.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:17.751][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:17.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:17.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:17.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:17.754][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [16587].
biodb.DEBUG[2025-06-28 16:03:17.755][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:03:17.756][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:03:17.757][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:03:17.761][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:03:17.762][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:03:17.763][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:03:17.764][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:03:17.765][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:17.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:17.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:17.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:17.768][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:17.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:17.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:17.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:17.772][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:03:17.778][private$selectFields]
biodb.TRACE[2025-06-28 16:03:17.779][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-06-28 16:03:17.780][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-06-28 16:03:17.781][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:03:17.783][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:17.784][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:17.784][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:17.785][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:17.786][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:17.787][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:17.788][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:17.789][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:17.790][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:03:17.791][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:03:17.792][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:17.793][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:17.793][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:17.794][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:17.795][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-06-28 16:03:17.796][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:17.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:17.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:17.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:17.800][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:17.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:17.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:17.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:17.803][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:17.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:17.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:17.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:17.807][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [19804].
biodb.DEBUG[2025-06-28 16:03:17.808][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-06-28 16:03:17.809][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-06-28 16:03:17.811][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:03:17.811][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:03:17.812][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:03:17.816][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:03:17.817][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:03:17.818][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:03:17.819][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-06-28 16:03:17.821][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.3*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-06-28 16:03:17.823][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-06-28 16:03:17.828][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/fee290bbc11906f18fd9eae3d71c81ab.content.
sched.DEBUG[2025-06-28 16:03:17.829][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-06-28 16:03:17.831][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:03:17.832][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:03:17.833][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:03:17.837][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:03:17.838][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:03:17.838][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:03:17.839][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:03:17.840][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:17.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:17.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:17.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:17.844][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:17.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:17.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:17.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:17.847][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:17.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:17.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:17.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:03:17.851][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:03:17.852][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:03:17.853][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:03:17.856][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:03:17.857][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:03:17.858][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:03:17.859][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:03:17.860][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:17.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:17.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:17.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:17.863][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:17.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:17.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:17.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:17.867][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:17.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:17.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:17.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:03:17.871][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:03:17.871][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:03:17.872][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:03:17.876][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:03:17.877][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:03:17.878][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:03:17.879][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:03:17.880][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:17.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:17.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:17.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:17.883][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:17.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:17.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:17.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:17.887][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:17.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:17.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:17.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:03:17.891][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:03:17.891][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:03:17.892][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:03:17.896][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:03:17.897][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:03:17.898][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:03:17.899][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:03:17.900][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:17.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:17.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:17.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:17.903][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:17.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:17.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:17.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:17.907][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:17.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:17.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:17.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:03:17.911][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:03:17.912][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:03:17.912][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:03:17.916][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:03:17.917][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:03:17.918][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:03:17.919][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:03:17.920][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:17.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:17.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:17.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:17.923][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:17.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:17.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:17.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:17.927][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:17.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:17.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:17.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:03:17.931][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:03:17.931][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:03:17.932][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:03:17.936][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:03:17.937][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:03:17.938][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:03:17.939][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:03:17.940][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:17.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:17.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:17.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:17.943][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:17.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:17.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:17.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:17.947][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:17.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:17.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:17.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:03:17.951][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:03:17.951][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:03:17.952][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:03:17.956][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:03:17.957][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:03:17.958][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:03:17.959][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:03:17.960][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:17.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:17.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:17.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:17.963][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:17.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:17.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:17.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:17.967][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:17.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:17.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:17.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:03:17.970][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:03:17.971][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:03:17.972][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:03:17.976][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:03:17.977][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:03:17.978][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:03:17.978][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:03:17.979][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:17.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:17.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:17.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:17.983][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:17.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:17.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:17.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:17.987][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:17.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:17.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:17.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:03:17.990][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:03:17.991][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:03:17.992][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:03:17.996][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:03:17.997][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:03:17.997][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:03:17.998][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:03:17.999][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:18.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:18.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:18.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:18.003][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:18.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:18.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:18.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:18.007][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:18.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:18.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:18.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:03:18.010][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:03:18.011][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:03:18.012][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:03:18.016][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:03:18.017][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:03:18.018][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:03:18.018][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:03:18.019][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:18.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:18.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:18.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:18.028][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:18.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:18.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:18.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:18.033][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:18.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:18.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:18.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:03:18.036][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:03:18.037][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:03:18.038][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:03:18.042][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:03:18.043][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:03:18.043][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:03:18.044][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:03:18.045][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:18.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:18.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:18.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:18.049][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:18.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:18.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:18.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:18.052][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:18.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:18.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:18.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:03:18.056][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:03:18.057][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:03:18.058][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:03:18.061][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:03:18.062][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:03:18.063][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:03:18.064][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:03:18.065][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:18.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:18.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:18.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:18.068][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:18.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:18.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:18.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:18.072][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:18.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:18.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:18.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:03:18.075][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:03:18.076][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:03:18.077][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:03:18.081][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:03:18.082][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:03:18.082][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:03:18.083][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:03:18.084][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:18.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:18.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:18.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:18.088][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:18.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:18.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:18.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:18.091][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:18.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:18.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:18.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:03:18.095][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:03:18.096][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:03:18.097][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:03:18.100][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:03:18.101][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:03:18.102][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:03:18.103][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:03:18.104][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:18.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:18.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:18.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:18.107][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:18.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:18.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:18.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:18.111][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:18.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:18.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:18.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:03:18.115][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:03:18.115][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:03:18.116][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:03:18.120][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:03:18.121][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:03:18.122][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:03:18.123][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:03:18.124][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:18.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:18.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:18.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:18.127][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:18.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:18.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:18.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:18.131][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:18.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:18.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:18.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:03:18.134][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:03:18.135][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:03:18.136][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:03:18.140][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:03:18.141][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:03:18.142][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:03:18.142][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:03:18.143][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:18.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:18.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:18.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:18.147][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:18.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:18.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:18.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:18.151][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:18.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:18.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:18.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:03:18.154][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:03:18.155][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:03:18.156][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:03:18.160][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:03:18.161][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:03:18.162][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:03:18.163][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:03:18.164][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:18.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:18.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:18.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:18.167][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:18.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:18.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:18.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:18.171][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:18.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:18.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:18.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:03:18.175][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:03:18.175][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:03:18.176][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:03:18.180][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:03:18.181][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:03:18.182][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:03:18.183][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:03:18.184][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:18.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:18.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:18.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:18.187][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:18.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:18.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:18.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:18.191][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:18.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:18.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:18.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:03:18.195][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:03:18.195][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:03:18.196][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:03:18.200][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:03:18.201][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:03:18.202][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:03:18.203][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:03:18.204][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:18.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:18.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:18.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:18.207][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:18.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:18.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:18.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:18.211][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:18.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:18.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:18.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:03:18.215][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:03:18.216][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:03:18.216][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:03:18.220][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:03:18.221][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:03:18.222][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:03:18.223][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:03:18.224][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:18.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:18.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:18.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:18.228][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:18.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:18.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:18.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:18.231][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:18.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:18.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:18.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:03:18.235][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:03:18.236][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:03:18.236][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:03:18.241][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:03:18.242][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:03:18.242][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:03:18.243][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:03:18.244][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:18.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:18.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:18.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:18.248][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:18.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:18.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:18.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:18.252][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:18.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:18.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:18.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:03:18.255][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:03:18.256][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:03:18.257][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:03:18.261][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:03:18.262][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:03:18.263][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:03:18.264][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:03:18.265][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:18.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:18.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:18.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:18.273][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:18.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:18.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:18.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:18.278][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:18.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:18.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:18.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:03:18.282][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:03:18.282][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:03:18.283][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:03:18.287][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:03:18.288][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:03:18.289][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:03:18.290][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:03:18.291][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:18.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:18.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:18.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:18.294][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:18.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:18.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:18.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:18.298][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:18.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:18.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:18.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:03:18.302][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:03:18.302][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:03:18.303][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:03:18.307][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:03:18.308][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:03:18.309][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:03:18.310][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:03:18.311][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:18.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:18.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:18.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:18.314][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:18.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:18.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:18.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:18.318][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:18.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:18.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:18.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:03:18.321][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:03:18.322][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:03:18.323][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:03:18.327][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:03:18.328][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:03:18.328][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:03:18.329][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:03:18.330][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:18.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:18.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:18.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:18.334][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:18.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:18.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:18.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:18.337][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:18.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:18.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:18.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:03:18.341][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:03:18.342][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:03:18.343][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:03:18.346][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:03:18.347][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:03:18.348][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:03:18.349][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:03:18.350][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:18.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:18.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:18.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:18.354][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:18.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:18.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:18.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:18.357][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:18.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:18.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:18.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:03:18.361][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:03:18.361][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:03:18.362][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:03:18.366][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:03:18.367][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:03:18.368][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:03:18.369][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:03:18.370][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:18.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:18.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:18.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:18.374][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:18.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:18.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:18.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:18.377][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:18.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:18.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:18.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:03:18.381][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:03:18.382][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:03:18.382][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:03:18.387][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:03:18.387][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:03:18.388][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:03:18.389][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:03:18.390][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:18.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:18.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:18.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:18.394][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:18.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:18.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:18.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:18.397][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:18.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:18.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:18.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:03:18.401][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-06-28 16:03:18.403][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:03:18.403][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:03:18.404][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:03:18.408][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:03:18.409][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:03:18.410][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:03:18.411][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:03:18.412][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:18.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:18.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:18.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:18.415][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:18.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:18.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:18.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:18.419][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:03:18.420][private$selectFields]
biodb.TRACE[2025-06-28 16:03:18.421][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-06-28 16:03:18.422][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-06-28 16:03:18.422][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:03:18.423][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:18.424][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:18.425][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:18.426][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:18.427][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:18.428][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:18.429][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:18.430][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:18.431][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:03:18.431][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:03:18.432][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:18.433][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:18.434][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:18.435][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:18.436][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-06-28 16:03:18.437][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:18.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:18.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:18.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:18.441][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:18.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:18.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:18.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:18.444][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:18.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:18.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:18.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:18.448][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [7799].
biodb.DEBUG[2025-06-28 16:03:18.449][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:03:18.450][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:03:18.451][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:03:18.455][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:03:18.456][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:03:18.456][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:03:18.457][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:03:18.458][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:18.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:18.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:18.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:18.462][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:18.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:18.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:18.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:18.466][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:03:18.466][private$selectFields]
biodb.TRACE[2025-06-28 16:03:18.467][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-06-28 16:03:18.468][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-06-28 16:03:18.469][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:03:18.470][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:18.471][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:18.472][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:18.473][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:18.474][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:18.474][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:18.475][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:18.476][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:18.477][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:03:18.478][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:03:18.479][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:18.480][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:18.481][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:18.482][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:18.483][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-06-28 16:03:18.483][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:18.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:18.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:18.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:18.487][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:18.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:18.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:18.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:18.491][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:18.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:18.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:18.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:18.495][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [71954].
biodb.DEBUG[2025-06-28 16:03:18.496][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:03:18.496][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:03:18.497][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:03:18.501][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:03:18.502][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:03:18.503][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:03:18.504][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:03:18.505][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:18.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:18.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:18.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:18.509][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:18.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:18.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:18.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:18.512][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:03:18.513][private$selectFields]
biodb.TRACE[2025-06-28 16:03:18.534][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-06-28 16:03:18.536][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-06-28 16:03:18.537][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:03:18.538][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:18.539][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:18.540][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:18.540][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:18.541][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:18.542][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:18.543][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:18.544][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:18.545][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:03:18.546][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:03:18.547][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:18.548][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:18.549][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:18.550][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:18.550][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-06-28 16:03:18.551][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:18.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:18.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:18.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:18.555][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:18.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:18.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:18.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:18.558][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:18.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:18.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:18.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:18.562][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [197612].
biodb.DEBUG[2025-06-28 16:03:18.563][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-06-28 16:03:18.564][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2025-06-28 16:03:18.579][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:18.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:18.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:18.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:18.582][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:18.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:18.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:18.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:18.586][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:18.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:18.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:18.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:18.590][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:18.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:18.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:18.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:18.593][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:18.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:18.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:18.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:18.597][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:18.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:18.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:18.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:18.601][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:18.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:18.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:18.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:18.604][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:18.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:18.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:18.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:18.608][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:18.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:18.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:18.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:18.611][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:18.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:18.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:18.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:18.615][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:18.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:18.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:18.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:18.619][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:18.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:18.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:18.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:03:18.624][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:03:18.625][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:03:18.626][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:03:18.630][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:03:18.631][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:03:18.632][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:03:18.632][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-06-28 16:03:18.635][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.1*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-06-28 16:03:18.637][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
sched.DEBUG[2025-06-28 16:03:18.638][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-06-28 16:03:18.639][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-06-28 16:03:18.641][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.1%2A&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL".
sched.TRACE[2025-06-28 16:03:18.996][try_get_rcurl_content] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.1%2A&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL).
fscache.INFO [2025-06-28 16:03:19.592][private$cache$saveContents] Save 1 contents to /home/biocbuild/.cache/R/sched.
fscache.INFO [2025-06-28 16:03:19.598][private$cache$saveContents] Save 1 contents to /home/biocbuild/.cache/R/sched.
sched.DEBUG[2025-06-28 16:03:19.601][self$getBiodb()$getRequestScheduler( ...] Retrieved content saved to cache.
biodb.DEBUG[2025-06-28 16:03:19.613][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:03:19.615][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:03:19.617][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:03:19.627][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:03:19.629][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:03:19.631][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:03:19.633][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:03:19.635][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:19.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:19.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:19.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:19.642][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:19.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:19.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:19.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:19.648][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:19.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:19.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:19.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:03:19.654][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:03:19.655][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:03:19.656][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:03:19.662][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:03:19.663][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:03:19.664][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:03:19.665][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:03:19.667][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:19.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:19.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:19.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:19.671][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:19.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:19.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:19.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:19.675][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:19.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:19.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:19.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:03:19.679][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:03:19.680][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:03:19.681][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:03:19.685][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:03:19.686][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:03:19.687][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:03:19.688][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:03:19.689][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:19.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:19.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:19.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:19.692][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:19.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:19.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:19.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:19.696][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:19.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:19.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:19.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:03:19.700][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:03:19.701][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:03:19.702][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:03:19.706][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:03:19.706][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:03:19.707][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:03:19.708][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:03:19.709][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:19.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:19.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:19.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:19.713][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:19.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:19.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:19.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:19.717][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:19.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:19.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:19.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:03:19.720][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:03:19.721][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:03:19.722][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:03:19.726][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:03:19.727][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:03:19.728][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:03:19.728][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:03:19.729][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:19.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:19.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:19.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:19.733][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:19.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:19.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:19.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:19.737][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:19.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:19.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:19.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:03:19.740][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:03:19.741][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:03:19.742][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:03:19.746][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:03:19.747][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:03:19.748][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:03:19.749][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-28 16:03:19.750][private$loadEntries] Creating entries from ids [1]: "9442".
biodb.DEBUG[2025-06-28 16:03:19.751][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-06-28 16:03:19.752][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
biodb.DEBUG[2025-06-28 16:03:19.753][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-06-28 16:03:19.754][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-06-28 16:03:19.755][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-06-28 16:03:19.756][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-06-28 16:03:19.758][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:03:19.759][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:03:19.760][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:03:19.764][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:03:19.765][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:03:19.775][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:03:19.776][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-06-28 16:03:19.777][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=9442".
fscache.INFO [2025-06-28 16:03:19.779][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
sched.DEBUG[2025-06-28 16:03:19.780][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-06-28 16:03:19.781][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-06-28 16:03:19.782][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=9442".
sched.TRACE[2025-06-28 16:03:20.123][try_get_rcurl_content] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=9442).
fscache.INFO [2025-06-28 16:03:20.471][private$cache$saveContents] Save 1 contents to /home/biocbuild/.cache/R/sched.
fscache.INFO [2025-06-28 16:03:20.474][private$cache$saveContents] Save 1 contents to /home/biocbuild/.cache/R/sched.
sched.DEBUG[2025-06-28 16:03:20.475][scheduler$sendRequest] Retrieved content saved to cache.
fscache.INFO [2025-06-28 16:03:20.476][cch$saveContents] Save 1 contents to /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
biodb.DEBUG[2025-06-28 16:03:20.477][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-06-28 16:03:20.478][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-06-28 16:03:20.480][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-06-28 16:03:20.481][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:03:20.482][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:03:20.483][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:03:20.487][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:03:20.488][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:03:20.488][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:03:20.489][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:03:20.492][ef$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:20.493][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:20.493][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:20.494][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:20.495][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:20.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:20.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:20.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:20.499][ef$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:03:20.500][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:03:20.501][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:20.502][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:20.503][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:03:20.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:03:20.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:20.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:20.507][ef$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:03:20.508][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:03:20.508][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:20.509][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:20.510][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:03:20.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:03:20.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:20.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:20.514][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:03:20.515][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:03:20.516][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:20.517][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:20.518][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:03:20.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:03:20.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:20.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:20.522][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:03:20.523][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:03:20.523][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:20.524][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:20.525][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:03:20.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:03:20.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:20.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:20.529][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:03:20.530][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:03:20.531][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:20.532][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:20.533][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:03:20.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:03:20.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:20.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:20.537][ef$get] Asked field names are: mass.
biodb.TRACE[2025-06-28 16:03:20.537][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:20.538][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:20.539][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:20.540][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-06-28 16:03:20.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:20.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:20.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:20.544][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:20.545][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:20.546][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:20.547][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:20.548][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:20.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:20.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:20.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:20.551][ef$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:03:20.552][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:03:20.553][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:20.554][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:20.555][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:03:20.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:03:20.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:20.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:20.559][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-06-28 16:03:20.560][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:03:20.561][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:20.562][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:20.563][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-06-28 16:03:20.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:03:20.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:20.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:20.567][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:03:20.568][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:03:20.569][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:20.569][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:20.570][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:03:20.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:03:20.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:20.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:20.574][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:20.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:20.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:20.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:20.578][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:20.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:20.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:20.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:20.582][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:20.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:20.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:20.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:20.585][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:20.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:20.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:20.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:20.589][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:20.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:20.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:20.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:20.593][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:20.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:20.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:20.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:20.596][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:20.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:20.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:20.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:20.600][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:20.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:20.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:20.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:20.604][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:20.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:20.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:20.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:20.607][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:20.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:20.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:20.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:03:20.611][self$createEntryFromContent] Accession numbers: 9442.
biodb.TRACE[2025-06-28 16:03:20.612][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:20.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:20.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:20.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:20.616][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:20.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:20.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:20.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:20.619][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:20.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:20.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:20.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:03:20.623][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:03:20.624][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:03:20.625][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:03:20.629][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:03:20.630][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:03:20.631][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:03:20.632][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-28 16:03:20.633][private$loadEntries] Creating entries from ids [1]: "34764".
biodb.DEBUG[2025-06-28 16:03:20.633][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-06-28 16:03:20.635][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
biodb.DEBUG[2025-06-28 16:03:20.636][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-06-28 16:03:20.637][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-06-28 16:03:20.638][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-06-28 16:03:20.639][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-06-28 16:03:20.641][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:03:20.642][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:03:20.643][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:03:20.647][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:03:20.648][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:03:20.649][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:03:20.649][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-06-28 16:03:20.650][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=34764".
fscache.INFO [2025-06-28 16:03:20.652][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
sched.DEBUG[2025-06-28 16:03:20.653][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-06-28 16:03:20.654][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-06-28 16:03:20.655][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=34764".
sched.TRACE[2025-06-28 16:03:20.998][try_get_rcurl_content] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=34764).
fscache.INFO [2025-06-28 16:03:21.356][private$cache$saveContents] Save 1 contents to /home/biocbuild/.cache/R/sched.
fscache.INFO [2025-06-28 16:03:21.361][private$cache$saveContents] Save 1 contents to /home/biocbuild/.cache/R/sched.
sched.DEBUG[2025-06-28 16:03:21.363][scheduler$sendRequest] Retrieved content saved to cache.
fscache.INFO [2025-06-28 16:03:21.366][cch$saveContents] Save 1 contents to /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
biodb.DEBUG[2025-06-28 16:03:21.369][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-06-28 16:03:21.372][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-06-28 16:03:21.374][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-06-28 16:03:21.378][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:03:21.380][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:03:21.381][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:03:21.390][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:03:21.392][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:03:21.393][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:03:21.395][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:03:21.399][ef$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:21.401][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:21.403][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:21.404][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:21.406][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:21.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:21.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:21.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:21.413][ef$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:03:21.415][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:03:21.416][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:21.417][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:21.419][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:03:21.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:03:21.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:21.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:21.424][ef$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:03:21.426][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:03:21.427][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:21.428][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:21.430][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:03:21.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:03:21.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:21.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:21.434][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:03:21.436][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:03:21.437][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:21.438][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:21.439][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:03:21.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:03:21.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:21.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:21.443][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:03:21.449][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:03:21.457][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:21.458][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:21.459][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:03:21.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:03:21.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:21.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:21.463][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:03:21.464][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:03:21.465][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:21.466][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:21.467][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:03:21.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:03:21.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:21.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:21.471][ef$get] Asked field names are: mass.
biodb.TRACE[2025-06-28 16:03:21.472][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:21.473][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:21.473][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:21.474][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-06-28 16:03:21.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:21.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:21.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:21.478][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:21.479][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:21.480][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:21.481][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:21.482][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:21.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:21.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:21.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:21.486][ef$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:03:21.487][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:03:21.488][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:21.488][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:21.490][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:03:21.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:03:21.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:21.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:21.493][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-06-28 16:03:21.494][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:03:21.495][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:21.496][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:21.497][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-06-28 16:03:21.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:03:21.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:21.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:21.501][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:03:21.502][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:03:21.503][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:21.504][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:21.505][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:03:21.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:03:21.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:21.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:21.508][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:21.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:21.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:21.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:21.512][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:21.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:21.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:21.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:21.516][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:21.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:21.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:21.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:21.519][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:21.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:21.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:21.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:21.523][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:21.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:21.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:21.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:21.527][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:21.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:21.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:21.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:21.530][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:21.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:21.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:21.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:21.534][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:21.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:21.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:21.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:21.538][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:21.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:21.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:21.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:21.541][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:21.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:21.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:21.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:03:21.545][self$createEntryFromContent] Accession numbers: 34764.
biodb.TRACE[2025-06-28 16:03:21.546][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:21.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:21.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:21.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:21.549][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:21.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:21.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:21.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:21.553][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:21.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:21.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:21.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:03:21.557][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-06-28 16:03:21.559][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:03:21.559][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:03:21.560][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:03:21.564][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:03:21.565][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:03:21.566][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:03:21.567][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:03:21.568][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:21.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:21.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:21.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:21.572][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:21.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:21.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:21.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:21.575][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:03:21.576][private$selectFields]
biodb.TRACE[2025-06-28 16:03:21.577][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-06-28 16:03:21.578][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-06-28 16:03:21.579][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:03:21.580][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:21.581][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:21.582][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:21.582][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:21.583][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:21.584][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:21.585][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:21.586][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:21.587][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:03:21.588][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:03:21.589][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:21.590][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:21.591][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:21.591][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:21.592][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-06-28 16:03:21.593][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:21.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:21.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:21.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:21.597][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:21.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:21.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:21.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:21.600][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:21.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:21.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:21.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:21.604][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [3014].
biodb.DEBUG[2025-06-28 16:03:21.605][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:03:21.606][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:03:21.607][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:03:21.611][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:03:21.612][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:03:21.613][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:03:21.614][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:03:21.615][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:21.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:21.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:21.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:21.618][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:21.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:21.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:21.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:21.622][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:03:21.623][private$selectFields]
biodb.TRACE[2025-06-28 16:03:21.624][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-06-28 16:03:21.625][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-06-28 16:03:21.626][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:03:21.626][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:21.627][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:21.628][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:21.629][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:21.630][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:21.631][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:21.632][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:21.633][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:21.634][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:03:21.635][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:03:21.635][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:21.636][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:21.637][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:21.638][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:21.639][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-06-28 16:03:21.640][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:21.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:21.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:21.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:21.644][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:21.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:21.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:21.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:21.647][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:21.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:21.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:21.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:21.651][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [7799].
biodb.DEBUG[2025-06-28 16:03:21.652][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:03:21.653][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:03:21.654][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:03:21.658][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:03:21.659][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:03:21.659][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:03:21.660][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:03:21.661][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:21.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:21.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:21.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:21.665][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:21.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:21.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:21.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:21.669][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:03:21.669][private$selectFields]
biodb.TRACE[2025-06-28 16:03:21.670][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-06-28 16:03:21.671][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-06-28 16:03:21.672][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:03:21.673][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:21.674][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:21.675][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:21.676][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:21.677][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:21.678][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:21.678][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:21.679][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:21.680][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:03:21.681][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:03:21.682][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:21.683][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:21.684][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:21.685][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:21.686][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-06-28 16:03:21.687][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:21.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:21.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:21.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:21.690][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:21.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:21.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:21.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:21.694][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:21.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:21.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:21.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:21.698][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [34764].
biodb.DEBUG[2025-06-28 16:03:21.699][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-06-28 16:03:21.704][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-06-28 16:03:21.707][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:03:21.708][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:03:21.709][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:03:21.713][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:03:21.714][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:03:21.714][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:03:21.715][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-06-28 16:03:21.718][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-06-28 16:03:21.720][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
sched.DEBUG[2025-06-28 16:03:21.721][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-06-28 16:03:21.722][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-06-28 16:03:21.724][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480%2A&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL".
sched.TRACE[2025-06-28 16:03:22.099][try_get_rcurl_content] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480%2A&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL).
fscache.INFO [2025-06-28 16:03:22.790][private$cache$saveContents] Save 1 contents to /home/biocbuild/.cache/R/sched.
fscache.INFO [2025-06-28 16:03:22.796][private$cache$saveContents] Save 1 contents to /home/biocbuild/.cache/R/sched.
sched.DEBUG[2025-06-28 16:03:22.798][self$getBiodb()$getRequestScheduler( ...] Retrieved content saved to cache.
biodb.DEBUG[2025-06-28 16:03:22.813][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:03:22.815][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:03:22.817][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:03:22.827][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:03:22.829][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:03:22.831][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:03:22.832][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-28 16:03:22.834][private$loadEntries] Creating entries from ids [1]: "2535".
biodb.DEBUG[2025-06-28 16:03:22.836][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-06-28 16:03:22.838][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
biodb.DEBUG[2025-06-28 16:03:22.840][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-06-28 16:03:22.842][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-06-28 16:03:22.843][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-06-28 16:03:22.845][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-06-28 16:03:22.848][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:03:22.850][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:03:22.851][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:03:22.856][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:03:22.858][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:03:22.859][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:03:22.860][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-06-28 16:03:22.861][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=2535".
fscache.INFO [2025-06-28 16:03:22.863][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
sched.DEBUG[2025-06-28 16:03:22.865][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-06-28 16:03:22.866][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-06-28 16:03:22.867][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=2535".
sched.TRACE[2025-06-28 16:03:23.204][try_get_rcurl_content] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=2535).
fscache.INFO [2025-06-28 16:03:23.553][private$cache$saveContents] Save 1 contents to /home/biocbuild/.cache/R/sched.
fscache.INFO [2025-06-28 16:03:23.558][private$cache$saveContents] Save 1 contents to /home/biocbuild/.cache/R/sched.
sched.DEBUG[2025-06-28 16:03:23.560][scheduler$sendRequest] Retrieved content saved to cache.
fscache.INFO [2025-06-28 16:03:23.564][cch$saveContents] Save 1 contents to /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
biodb.DEBUG[2025-06-28 16:03:23.566][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-06-28 16:03:23.569][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-06-28 16:03:23.572][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-06-28 16:03:23.575][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:03:23.577][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:03:23.579][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:03:23.590][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:03:23.592][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:03:23.593][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:03:23.595][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:03:23.599][ef$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:23.601][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:23.603][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:23.605][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:23.607][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:23.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:23.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:23.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:23.613][ef$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:03:23.615][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:03:23.616][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:23.617][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:23.619][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:03:23.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:03:23.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:23.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:23.624][ef$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:03:23.626][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:03:23.627][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:23.628][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:23.630][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:03:23.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:03:23.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:23.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:23.635][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:03:23.636][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:03:23.637][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:23.638][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:23.639][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:03:23.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:03:23.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:23.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:23.643][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:03:23.645][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:03:23.646][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:23.646][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:23.648][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:03:23.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:03:23.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:23.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:23.652][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:03:23.653][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:03:23.654][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:23.655][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:23.656][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:03:23.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:03:23.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:23.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:23.660][ef$get] Asked field names are: mass.
biodb.TRACE[2025-06-28 16:03:23.661][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:23.662][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:23.663][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:23.664][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-06-28 16:03:23.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:23.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:23.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:23.668][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:23.669][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:23.670][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:23.671][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:23.672][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:23.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:23.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:23.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:23.676][ef$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:03:23.677][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:03:23.678][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:23.679][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:23.681][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:03:23.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:03:23.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:23.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:23.685][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-06-28 16:03:23.686][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:03:23.687][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:23.688][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:23.689][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-06-28 16:03:23.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:03:23.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:23.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:23.693][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:03:23.694][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:03:23.695][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:23.696][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:23.697][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:03:23.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:03:23.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:23.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:23.701][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:23.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:23.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:23.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:23.705][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:23.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:23.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:23.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:23.709][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:23.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:23.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:23.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:23.713][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:23.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:23.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:23.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:23.717][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:23.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:23.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:23.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:23.721][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:23.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:23.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:23.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:23.725][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:23.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:23.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:23.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:23.729][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:23.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:23.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:23.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:23.733][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:23.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:23.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:23.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:23.737][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:23.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:23.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:23.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:03:23.740][self$createEntryFromContent] Accession numbers: 2535.
biodb.TRACE[2025-06-28 16:03:23.742][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:23.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:23.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:23.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:23.745][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:23.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:23.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:23.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:23.749][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:23.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:23.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:23.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:03:23.753][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:03:23.754][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:03:23.755][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:03:23.760][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:03:23.761][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:03:23.762][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:03:23.763][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:03:23.764][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:23.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:23.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:23.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:23.768][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:23.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:23.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:23.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:23.772][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:23.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:23.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:23.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:03:23.776][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:03:23.777][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:03:23.778][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:03:23.782][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:03:23.783][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:03:23.784][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:03:23.801][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-28 16:03:23.803][private$loadEntries] Creating entries from ids [1]: "5525".
biodb.DEBUG[2025-06-28 16:03:23.804][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-06-28 16:03:23.806][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
biodb.DEBUG[2025-06-28 16:03:23.807][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-06-28 16:03:23.808][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-06-28 16:03:23.809][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-06-28 16:03:23.810][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-06-28 16:03:23.813][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:03:23.814][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:03:23.815][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:03:23.820][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:03:23.821][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:03:23.822][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:03:23.822][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-06-28 16:03:23.824][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=5525".
fscache.INFO [2025-06-28 16:03:23.826][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
sched.DEBUG[2025-06-28 16:03:23.827][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-06-28 16:03:23.828][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-06-28 16:03:23.829][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=5525".
sched.TRACE[2025-06-28 16:03:24.169][try_get_rcurl_content] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=5525).
fscache.INFO [2025-06-28 16:03:24.523][private$cache$saveContents] Save 1 contents to /home/biocbuild/.cache/R/sched.
fscache.INFO [2025-06-28 16:03:24.527][private$cache$saveContents] Save 1 contents to /home/biocbuild/.cache/R/sched.
sched.DEBUG[2025-06-28 16:03:24.530][scheduler$sendRequest] Retrieved content saved to cache.
fscache.INFO [2025-06-28 16:03:24.533][cch$saveContents] Save 1 contents to /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
biodb.DEBUG[2025-06-28 16:03:24.536][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-06-28 16:03:24.538][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-06-28 16:03:24.541][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-06-28 16:03:24.545][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:03:24.546][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:03:24.548][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:03:24.558][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:03:24.560][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:03:24.562][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:03:24.564][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:03:24.568][ef$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:24.570][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:24.572][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:24.574][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:24.575][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:24.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:24.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:24.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:24.582][ef$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:03:24.583][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:03:24.584][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:24.586][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:24.587][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:03:24.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:03:24.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:24.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:24.593][ef$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:03:24.594][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:03:24.595][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:24.596][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:24.597][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:03:24.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:03:24.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:24.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:24.602][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:03:24.603][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:03:24.604][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:24.605][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:24.606][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:03:24.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:03:24.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:24.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:24.610][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:03:24.611][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:03:24.612][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:24.613][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:24.614][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:03:24.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:03:24.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:24.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:24.618][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:03:24.619][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:03:24.620][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:24.620][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:24.622][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:03:24.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:03:24.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:24.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:24.625][ef$get] Asked field names are: mass.
biodb.TRACE[2025-06-28 16:03:24.626][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:24.627][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:24.628][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:24.629][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-06-28 16:03:24.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:24.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:24.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:24.633][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:24.634][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:24.635][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:24.636][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:24.637][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:24.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:24.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:24.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:24.640][ef$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:03:24.641][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:03:24.642][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:24.643][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:24.644][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:03:24.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:03:24.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:24.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:24.648][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-06-28 16:03:24.649][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:03:24.650][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:24.651][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:24.652][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-06-28 16:03:24.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:03:24.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:24.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:24.656][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:03:24.657][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:03:24.658][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:24.659][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:24.660][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:03:24.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:03:24.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:24.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:24.663][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:24.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:24.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:24.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:24.667][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:24.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:24.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:24.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:24.671][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:24.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:24.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:24.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:24.675][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:24.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:24.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:24.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:24.678][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:24.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:24.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:24.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:24.682][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:24.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:24.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:24.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:24.685][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:24.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:24.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:24.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:24.689][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:24.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:24.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:24.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:24.693][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:24.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:24.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:24.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:24.697][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:24.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:24.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:24.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:03:24.700][self$createEntryFromContent] Accession numbers: 5525.
biodb.TRACE[2025-06-28 16:03:24.701][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:24.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:24.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:24.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:24.705][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:24.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:24.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:24.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:24.709][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:24.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:24.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:24.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:03:24.712][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:03:24.713][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:03:24.714][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:03:24.718][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:03:24.719][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:03:24.720][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:03:24.721][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:03:24.722][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:24.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:24.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:24.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:24.725][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:24.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:24.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:24.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:24.729][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:24.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:24.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:24.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:03:24.733][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-06-28 16:03:24.734][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:03:24.735][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:03:24.736][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:03:24.740][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:03:24.741][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:03:24.742][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:03:24.742][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:03:24.743][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:24.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:24.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:24.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:24.747][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:24.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:24.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:24.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:24.751][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:03:24.752][private$selectFields]
biodb.TRACE[2025-06-28 16:03:24.752][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-06-28 16:03:24.753][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-06-28 16:03:24.754][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:03:24.755][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:24.756][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:24.757][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:24.758][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:24.759][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:24.760][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:24.761][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:24.761][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:24.762][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:03:24.763][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:03:24.764][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:24.765][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:24.766][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:24.767][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:24.768][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-06-28 16:03:24.769][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:24.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:24.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:24.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:24.772][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:24.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:24.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:24.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:24.776][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:24.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:24.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:24.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:24.791][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [2535].
biodb.DEBUG[2025-06-28 16:03:24.792][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:03:24.793][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:03:24.794][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:03:24.798][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:03:24.799][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:03:24.800][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:03:24.801][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:03:24.802][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:24.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:24.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:24.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:24.806][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:24.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:24.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:24.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:24.809][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:03:24.810][private$selectFields]
biodb.TRACE[2025-06-28 16:03:24.811][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-06-28 16:03:24.812][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-06-28 16:03:24.813][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:03:24.813][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:24.814][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:24.815][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:24.816][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:24.817][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:24.818][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:24.819][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:24.820][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:24.821][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:03:24.821][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:03:24.822][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:24.823][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:24.824][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:24.825][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:24.826][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-06-28 16:03:24.827][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:24.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:24.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:24.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:24.830][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:24.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:24.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:24.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:24.834][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:24.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:24.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:24.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:24.838][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2025-06-28 16:03:24.839][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:03:24.840][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:03:24.840][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:03:24.844][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:03:24.845][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:03:24.846][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:03:24.847][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:03:24.848][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:24.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:24.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:24.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:24.851][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:24.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:24.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:24.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:24.855][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:03:24.856][private$selectFields]
biodb.TRACE[2025-06-28 16:03:24.857][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-06-28 16:03:24.858][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-06-28 16:03:24.858][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:03:24.859][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:24.860][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:24.861][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:24.862][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:24.863][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:24.864][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:24.865][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:24.866][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:24.866][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:03:24.867][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:03:24.868][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:24.869][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:24.870][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:24.871][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:24.872][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-06-28 16:03:24.873][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:24.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:24.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:24.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:24.876][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:24.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:24.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:24.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:24.880][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:24.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:24.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:24.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:24.884][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [16587].
biodb.DEBUG[2025-06-28 16:03:24.885][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-06-28 16:03:24.885][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-06-28 16:03:24.887][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:03:24.888][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:03:24.889][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:03:24.893][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:03:24.894][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:03:24.895][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:03:24.895][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-06-28 16:03:24.898][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=409.9*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-06-28 16:03:24.900][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
sched.DEBUG[2025-06-28 16:03:24.901][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-06-28 16:03:24.902][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-06-28 16:03:24.904][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=409.9%2A&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL".
sched.TRACE[2025-06-28 16:03:25.246][try_get_rcurl_content] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=409.9%2A&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL).
fscache.INFO [2025-06-28 16:03:25.588][private$cache$saveContents] Save 1 contents to /home/biocbuild/.cache/R/sched.
fscache.INFO [2025-06-28 16:03:25.591][private$cache$saveContents] Save 1 contents to /home/biocbuild/.cache/R/sched.
sched.DEBUG[2025-06-28 16:03:25.592][self$getBiodb()$getRequestScheduler( ...] Retrieved content saved to cache.
biodb.DEBUG[2025-06-28 16:03:25.596][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:03:25.597][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:03:25.598][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:03:25.603][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:03:25.604][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:03:25.606][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:03:25.608][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-28 16:03:25.610][private$loadEntries] Creating entries from ids [1]: "31303".
biodb.DEBUG[2025-06-28 16:03:25.612][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-06-28 16:03:25.615][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
biodb.DEBUG[2025-06-28 16:03:25.617][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-06-28 16:03:25.618][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-06-28 16:03:25.620][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-06-28 16:03:25.622][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-06-28 16:03:25.626][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:03:25.627][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:03:25.628][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:03:25.635][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:03:25.636][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:03:25.637][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:03:25.638][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-06-28 16:03:25.640][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=31303".
fscache.INFO [2025-06-28 16:03:25.642][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
sched.DEBUG[2025-06-28 16:03:25.643][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-06-28 16:03:25.645][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-06-28 16:03:25.646][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=31303".
sched.TRACE[2025-06-28 16:03:25.989][try_get_rcurl_content] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=31303).
fscache.INFO [2025-06-28 16:03:26.878][private$cache$saveContents] Save 1 contents to /home/biocbuild/.cache/R/sched.
fscache.INFO [2025-06-28 16:03:26.883][private$cache$saveContents] Save 1 contents to /home/biocbuild/.cache/R/sched.
sched.DEBUG[2025-06-28 16:03:26.885][scheduler$sendRequest] Retrieved content saved to cache.
fscache.INFO [2025-06-28 16:03:26.888][cch$saveContents] Save 1 contents to /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
biodb.DEBUG[2025-06-28 16:03:26.891][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-06-28 16:03:26.894][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-06-28 16:03:26.896][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-06-28 16:03:26.900][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:03:26.902][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:03:26.904][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:03:26.913][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:03:26.916][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:03:26.917][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:03:26.919][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:03:26.923][ef$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:26.925][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:26.927][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:26.928][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:26.930][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:26.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:26.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:26.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:26.936][ef$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:03:26.938][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:03:26.939][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:26.941][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:26.942][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:03:26.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:03:26.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:26.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:26.947][ef$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:03:26.949][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:03:26.950][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:26.951][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:26.952][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:03:26.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:03:26.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:26.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:26.957][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:03:26.958][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:03:26.959][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:26.960][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:26.961][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:03:26.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:03:26.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:26.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:26.965][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:03:26.966][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:03:26.967][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:26.968][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:26.969][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:03:26.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:03:26.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:26.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:26.972][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:03:26.973][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:03:26.974][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:26.975][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:26.976][ef$get] Asked field names are: mass.
biodb.TRACE[2025-06-28 16:03:26.977][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:26.978][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:26.979][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:26.980][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-06-28 16:03:26.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:26.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:26.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:26.984][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:26.985][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:26.986][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:26.986][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:26.987][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:26.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:26.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:26.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:26.991][ef$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:03:26.992][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:03:26.993][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:26.994][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:26.995][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:03:26.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:03:26.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:26.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:26.999][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-06-28 16:03:27.000][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:03:27.001][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:27.013][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:27.015][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-06-28 16:03:27.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:03:27.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:27.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:27.019][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:03:27.020][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:03:27.021][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:27.022][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:27.023][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:03:27.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:03:27.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:27.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:27.026][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:27.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:27.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:27.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:27.030][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:27.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:27.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:27.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:27.034][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:27.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:27.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:27.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:27.037][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:27.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:27.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:27.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:27.041][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:27.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:27.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:27.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:27.044][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:27.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:27.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:27.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:27.048][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:27.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:27.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:27.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:27.052][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:27.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:27.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:27.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:27.055][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:27.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:27.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:27.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:27.059][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:27.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:27.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:27.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:03:27.062][self$createEntryFromContent] Accession numbers: 31303.
biodb.TRACE[2025-06-28 16:03:27.063][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:27.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:27.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:27.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:27.067][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:27.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:27.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:27.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:27.070][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:27.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:27.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:27.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:03:27.074][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:03:27.075][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:03:27.076][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:03:27.080][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:03:27.081][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:03:27.082][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:03:27.082][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-28 16:03:27.083][private$loadEntries] Creating entries from ids [1]: "37118".
biodb.DEBUG[2025-06-28 16:03:27.084][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-06-28 16:03:27.086][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
biodb.DEBUG[2025-06-28 16:03:27.087][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-06-28 16:03:27.087][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-06-28 16:03:27.088][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-06-28 16:03:27.089][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-06-28 16:03:27.092][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:03:27.092][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:03:27.093][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:03:27.097][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:03:27.098][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:03:27.099][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:03:27.100][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-06-28 16:03:27.101][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=37118".
fscache.INFO [2025-06-28 16:03:27.102][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
sched.DEBUG[2025-06-28 16:03:27.103][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-06-28 16:03:27.104][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-06-28 16:03:27.106][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=37118".
sched.TRACE[2025-06-28 16:03:27.448][try_get_rcurl_content] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=37118).
fscache.INFO [2025-06-28 16:03:27.789][private$cache$saveContents] Save 1 contents to /home/biocbuild/.cache/R/sched.
fscache.INFO [2025-06-28 16:03:27.794][private$cache$saveContents] Save 1 contents to /home/biocbuild/.cache/R/sched.
sched.DEBUG[2025-06-28 16:03:27.796][scheduler$sendRequest] Retrieved content saved to cache.
fscache.INFO [2025-06-28 16:03:27.799][cch$saveContents] Save 1 contents to /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
biodb.DEBUG[2025-06-28 16:03:27.801][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-06-28 16:03:27.803][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-06-28 16:03:27.806][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-06-28 16:03:27.809][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:03:27.811][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:03:27.813][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:03:27.821][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:03:27.823][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:03:27.825][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:03:27.827][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:03:27.831][ef$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:27.833][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:27.835][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:27.836][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:27.838][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:27.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:27.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:27.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:27.844][ef$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:03:27.846][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:03:27.847][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:27.849][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:27.850][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:03:27.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:03:27.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:27.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:27.855][ef$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:03:27.857][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:03:27.858][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:27.859][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:27.860][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:03:27.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:03:27.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:27.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:27.865][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:03:27.866][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:03:27.867][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:27.868][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:27.869][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:03:27.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:03:27.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:27.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:27.873][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:03:27.874][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:03:27.875][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:27.876][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:27.877][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:03:27.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:03:27.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:27.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:27.881][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:03:27.882][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:03:27.883][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:27.884][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:27.885][ef$get] Asked field names are: mass.
biodb.TRACE[2025-06-28 16:03:27.886][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:27.887][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:27.887][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:27.889][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-06-28 16:03:27.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:27.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:27.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:27.892][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:27.893][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:27.894][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:27.895][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:27.896][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:27.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:27.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:27.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:27.900][ef$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:03:27.901][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:03:27.902][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:27.902][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:27.904][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:03:27.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:03:27.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:27.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:27.907][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-06-28 16:03:27.908][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:03:27.909][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:27.910][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:27.911][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-06-28 16:03:27.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:03:27.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:27.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:27.915][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:03:27.916][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:03:27.917][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:27.917][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:27.919][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:03:27.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:03:27.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:27.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:27.922][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:27.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:27.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:27.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:27.926][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:27.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:27.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:27.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:27.930][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:27.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:27.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:27.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:27.933][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:27.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:27.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:27.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:27.937][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:27.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:27.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:27.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:27.940][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:27.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:27.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:27.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:27.944][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:27.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:27.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:27.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:27.948][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:27.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:27.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:27.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:27.951][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:27.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:27.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:27.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:27.955][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:27.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:27.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:27.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:03:27.959][self$createEntryFromContent] Accession numbers: 37118.
biodb.TRACE[2025-06-28 16:03:27.960][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:27.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:27.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:27.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:27.963][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:27.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:27.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:27.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:27.967][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:27.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:27.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:27.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:03:27.978][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:03:27.980][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:03:27.981][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:03:27.985][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:03:27.986][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:03:27.987][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:03:27.988][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-28 16:03:27.989][private$loadEntries] Creating entries from ids [1]: "39424".
biodb.DEBUG[2025-06-28 16:03:27.990][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-06-28 16:03:27.991][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
biodb.DEBUG[2025-06-28 16:03:27.992][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-06-28 16:03:27.993][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-06-28 16:03:27.994][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-06-28 16:03:27.995][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-06-28 16:03:27.997][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:03:27.998][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:03:27.999][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:03:28.003][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:03:28.004][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:03:28.004][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:03:28.005][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-06-28 16:03:28.006][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=39424".
fscache.INFO [2025-06-28 16:03:28.008][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
sched.DEBUG[2025-06-28 16:03:28.009][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-06-28 16:03:28.010][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-06-28 16:03:28.011][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=39424".
sched.TRACE[2025-06-28 16:03:28.352][try_get_rcurl_content] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=39424).
fscache.INFO [2025-06-28 16:03:28.697][private$cache$saveContents] Save 1 contents to /home/biocbuild/.cache/R/sched.
fscache.INFO [2025-06-28 16:03:28.702][private$cache$saveContents] Save 1 contents to /home/biocbuild/.cache/R/sched.
sched.DEBUG[2025-06-28 16:03:28.705][scheduler$sendRequest] Retrieved content saved to cache.
fscache.INFO [2025-06-28 16:03:28.708][cch$saveContents] Save 1 contents to /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
biodb.DEBUG[2025-06-28 16:03:28.710][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-06-28 16:03:28.713][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-06-28 16:03:28.716][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-06-28 16:03:28.719][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:03:28.721][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:03:28.723][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:03:28.732][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:03:28.735][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:03:28.736][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:03:28.738][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:03:28.742][ef$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:28.744][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:28.746][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:28.748][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:28.750][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:28.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:28.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:28.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:28.756][ef$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:03:28.758][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:03:28.759][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:28.760][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:28.762][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:03:28.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:03:28.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:28.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:28.767][ef$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:03:28.768][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:03:28.770][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:28.771][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:28.772][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:03:28.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:03:28.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:28.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:28.777][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:03:28.778][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:03:28.779][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:28.780][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:28.781][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:03:28.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:03:28.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:28.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:28.785][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:03:28.786][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:03:28.787][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:28.788][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:28.789][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:03:28.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:03:28.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:28.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:28.792][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:03:28.793][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:03:28.794][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:28.795][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:28.796][ef$get] Asked field names are: mass.
biodb.TRACE[2025-06-28 16:03:28.797][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:28.798][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:28.799][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:28.800][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-06-28 16:03:28.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:28.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:28.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:28.804][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:28.805][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:28.806][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:28.807][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:28.808][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:28.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:28.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:28.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:28.811][ef$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:03:28.812][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:03:28.813][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:28.814][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:28.815][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:03:28.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:03:28.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:28.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:28.819][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-06-28 16:03:28.820][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:03:28.821][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:28.822][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:28.823][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-06-28 16:03:28.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:03:28.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:28.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:28.826][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:03:28.827][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:03:28.828][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:28.829][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:28.830][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:03:28.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:03:28.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:28.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:28.834][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:28.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:28.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:28.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:28.838][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:28.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:28.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:28.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:28.841][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:28.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:28.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:28.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:28.845][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:28.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:28.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:28.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:28.848][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:28.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:28.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:28.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:28.852][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:28.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:28.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:28.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:28.856][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:28.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:28.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:28.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:28.859][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:28.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:28.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:28.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:28.863][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:28.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:28.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:28.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:28.867][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:28.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:28.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:28.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:03:28.870][self$createEntryFromContent] Accession numbers: 39424.
biodb.TRACE[2025-06-28 16:03:28.871][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:28.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:28.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:28.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:28.875][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:28.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:28.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:28.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:28.879][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:28.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:28.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:28.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:03:28.882][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:03:28.883][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:03:28.884][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:03:28.888][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:03:28.889][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:03:28.890][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:03:28.890][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-28 16:03:28.891][private$loadEntries] Creating entries from ids [1]: "81767".
biodb.DEBUG[2025-06-28 16:03:28.892][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-06-28 16:03:28.894][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
biodb.DEBUG[2025-06-28 16:03:28.895][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-06-28 16:03:28.896][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-06-28 16:03:28.897][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-06-28 16:03:28.897][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-06-28 16:03:28.900][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:03:28.901][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:03:28.901][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:03:28.905][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:03:28.906][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:03:28.907][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:03:28.908][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-06-28 16:03:28.909][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=81767".
fscache.INFO [2025-06-28 16:03:28.911][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
sched.DEBUG[2025-06-28 16:03:28.912][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-06-28 16:03:28.913][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-06-28 16:03:28.914][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=81767".
sched.TRACE[2025-06-28 16:03:29.260][try_get_rcurl_content] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=81767).
fscache.INFO [2025-06-28 16:03:29.621][private$cache$saveContents] Save 1 contents to /home/biocbuild/.cache/R/sched.
fscache.INFO [2025-06-28 16:03:29.626][private$cache$saveContents] Save 1 contents to /home/biocbuild/.cache/R/sched.
sched.DEBUG[2025-06-28 16:03:29.628][scheduler$sendRequest] Retrieved content saved to cache.
fscache.INFO [2025-06-28 16:03:29.631][cch$saveContents] Save 1 contents to /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
biodb.DEBUG[2025-06-28 16:03:29.634][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-06-28 16:03:29.637][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-06-28 16:03:29.639][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-06-28 16:03:29.643][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:03:29.644][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:03:29.646][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:03:29.656][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:03:29.658][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:03:29.660][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:03:29.662][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:03:29.666][ef$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:29.668][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:29.670][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:29.671][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:29.673][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:29.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:29.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:29.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:29.680][ef$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:03:29.681][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:03:29.696][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:29.698][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:29.699][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:03:29.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:03:29.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:29.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:29.704][ef$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:03:29.705][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:03:29.706][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:29.707][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:29.708][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:03:29.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:03:29.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:29.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:29.712][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:03:29.713][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:03:29.714][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:29.715][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:29.716][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:03:29.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:03:29.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:29.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:29.719][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:03:29.720][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:03:29.721][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:29.722][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:29.723][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:03:29.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:03:29.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:29.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:29.727][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:03:29.728][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:03:29.728][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:29.729][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:29.730][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:03:29.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:03:29.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:29.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:29.734][ef$get] Asked field names are: mass.
biodb.TRACE[2025-06-28 16:03:29.735][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:29.736][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:29.737][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:29.738][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-06-28 16:03:29.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:29.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:29.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:29.741][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:29.742][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:29.743][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:29.744][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:29.745][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:29.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:29.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:29.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:29.749][ef$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:03:29.750][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:03:29.750][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:29.751][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:29.753][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:03:29.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:03:29.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:29.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:29.756][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-06-28 16:03:29.757][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:03:29.758][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:29.759][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:29.760][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-06-28 16:03:29.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:03:29.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:29.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:29.764][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:03:29.765][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:03:29.765][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:29.766][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:29.767][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:03:29.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:03:29.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:29.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:29.771][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:29.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:29.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:29.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:29.775][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:29.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:29.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:29.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:29.778][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:29.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:29.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:29.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:29.782][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:29.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:29.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:29.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:29.785][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:29.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:29.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:29.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:29.789][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:29.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:29.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:29.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:29.793][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:29.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:29.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:29.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:29.796][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:29.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:29.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:29.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:29.800][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:29.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:29.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:29.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:29.804][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:29.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:29.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:29.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:03:29.807][self$createEntryFromContent] Accession numbers: 81767.
biodb.TRACE[2025-06-28 16:03:29.808][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:29.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:29.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:29.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:29.812][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:29.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:29.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:29.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:29.816][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:29.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:29.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:29.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:03:29.819][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:03:29.820][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:03:29.821][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:03:29.825][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:03:29.826][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:03:29.827][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:03:29.828][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:03:29.829][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:29.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:29.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:29.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:29.832][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:29.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:29.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:29.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:29.836][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:29.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:29.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:29.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:03:29.840][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-06-28 16:03:29.841][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:03:29.842][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:03:29.843][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:03:29.847][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:03:29.848][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:03:29.848][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:03:29.849][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:03:29.850][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:29.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:29.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:29.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:29.854][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:29.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:29.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:29.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:29.858][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:03:29.858][private$selectFields]
biodb.TRACE[2025-06-28 16:03:29.859][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-06-28 16:03:29.860][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-06-28 16:03:29.861][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:03:29.862][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:29.863][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:29.864][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:29.865][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:29.865][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:29.866][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:29.867][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:29.868][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:29.869][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:03:29.870][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:03:29.871][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:29.872][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:29.873][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:29.874][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:29.874][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-06-28 16:03:29.875][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:29.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:29.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:29.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:29.879][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:29.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:29.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:29.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:29.883][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:29.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:29.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:29.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:29.887][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [31303].
biodb.DEBUG[2025-06-28 16:03:29.888][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:03:29.888][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:03:29.889][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:03:29.893][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:03:29.894][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:03:29.895][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:03:29.896][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:03:29.897][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:29.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:29.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:29.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:29.900][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:29.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:29.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:29.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:29.904][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:03:29.905][private$selectFields]
biodb.TRACE[2025-06-28 16:03:29.906][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-06-28 16:03:29.906][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-06-28 16:03:29.907][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:03:29.908][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:29.909][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:29.910][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:29.911][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:29.912][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:29.913][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:29.914][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:29.915][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:29.915][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:03:29.916][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:03:29.917][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:29.918][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:29.919][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:29.920][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:29.921][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-06-28 16:03:29.922][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:29.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:29.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:29.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:29.925][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:29.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:29.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:29.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:29.929][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:29.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:29.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:29.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:29.933][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [81767].
biodb.DEBUG[2025-06-28 16:03:29.934][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:03:29.935][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:03:29.936][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:03:29.945][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:03:29.946][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:03:29.947][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:03:29.947][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:03:29.948][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:29.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:29.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:29.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:29.952][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:29.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:29.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:29.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:29.956][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:03:29.957][private$selectFields]
biodb.TRACE[2025-06-28 16:03:29.958][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-06-28 16:03:29.958][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-06-28 16:03:29.959][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:03:29.960][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:29.961][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:29.962][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:29.963][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:29.964][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:29.965][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:29.966][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:29.966][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:29.967][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:03:29.968][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:03:29.969][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:29.970][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:29.971][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:29.972][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:29.973][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-06-28 16:03:29.973][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:29.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:29.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:29.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:29.977][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:29.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:29.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:29.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:29.981][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:29.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:29.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:29.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:29.984][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [131378].
biodb.DEBUG[2025-06-28 16:03:29.985][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-06-28 16:03:29.986][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-06-28 16:03:30.003][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:03:30.003][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:03:30.004][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:03:30.008][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:03:30.009][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:03:30.009][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:03:30.010][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-06-28 16:03:30.013][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-06-28 16:03:30.015][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-06-28 16:03:30.017][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/2e865a03592d6effdf242ff63104f35a.content.
sched.DEBUG[2025-06-28 16:03:30.017][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
sched.DEBUG[2025-06-28 16:03:30.020][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-06-28 16:03:30.023][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-06-28 16:03:30.025][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/f0c73645ca32490f91d503a462d812b2.content.
sched.DEBUG[2025-06-28 16:03:30.026][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-06-28 16:03:30.028][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:03:30.029][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:03:30.029][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:03:30.033][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:03:30.034][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:03:30.035][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:03:30.036][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:03:30.037][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:30.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:30.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:30.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:30.040][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:30.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:30.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:30.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:30.044][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:30.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:30.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:30.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:03:30.048][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:03:30.048][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:03:30.049][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:03:30.053][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:03:30.054][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:03:30.055][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:03:30.056][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:03:30.057][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:30.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:30.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:30.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:30.060][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:30.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:30.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:30.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:30.064][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:30.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:30.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:30.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:03:30.068][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:03:30.068][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:03:30.069][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:03:30.073][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:03:30.074][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:03:30.075][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:03:30.076][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:03:30.077][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:30.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:30.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:30.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:30.080][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:30.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:30.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:30.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:30.084][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:30.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:30.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:30.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:03:30.088][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-06-28 16:03:30.089][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:03:30.090][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:03:30.091][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:03:30.094][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:03:30.095][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:03:30.096][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:03:30.097][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:03:30.098][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:30.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:30.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:30.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:30.102][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:30.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:30.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:30.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:30.105][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:03:30.106][private$selectFields]
biodb.TRACE[2025-06-28 16:03:30.107][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-06-28 16:03:30.108][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-06-28 16:03:30.109][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:03:30.110][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:30.111][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:30.112][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:30.112][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:30.113][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:30.114][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:30.115][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:30.116][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:30.117][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:03:30.118][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:03:30.119][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:30.120][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:30.121][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:30.121][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:30.122][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-06-28 16:03:30.123][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:30.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:30.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:30.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:30.127][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:30.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:30.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:30.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:30.131][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:30.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:30.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:30.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:30.134][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4648].
biodb.DEBUG[2025-06-28 16:03:30.135][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:03:30.136][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:03:30.137][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:03:30.141][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:03:30.142][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:03:30.143][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:03:30.143][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:03:30.145][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:30.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:30.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:30.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:30.148][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:30.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:30.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:30.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:30.152][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:03:30.153][private$selectFields]
biodb.TRACE[2025-06-28 16:03:30.153][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-06-28 16:03:30.154][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-06-28 16:03:30.155][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:03:30.156][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:30.157][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:30.158][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:30.159][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:30.160][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:30.161][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:30.162][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:30.162][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:30.163][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:03:30.164][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:03:30.165][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:30.166][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:30.167][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:30.168][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:30.169][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-06-28 16:03:30.170][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:30.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:30.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:30.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:30.173][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:30.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:30.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:30.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:30.177][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:30.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:30.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:30.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:30.181][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2025-06-28 16:03:30.182][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:03:30.183][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:03:30.189][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:03:30.193][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:03:30.194][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:03:30.195][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:03:30.196][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:03:30.197][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:30.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:30.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:30.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:30.201][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:30.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:30.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:30.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:30.204][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:03:30.205][private$selectFields]
biodb.TRACE[2025-06-28 16:03:30.206][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-06-28 16:03:30.207][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-06-28 16:03:30.208][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:03:30.208][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:30.209][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:30.210][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:30.211][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:30.212][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:30.213][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:30.214][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:30.215][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:30.216][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:03:30.216][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:03:30.217][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:30.218][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:30.219][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:30.220][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:30.221][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-06-28 16:03:30.222][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:30.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:30.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:30.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:30.225][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:30.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:30.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:30.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:30.229][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:30.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:30.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:30.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:30.233][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [62447].
biodb.DEBUG[2025-06-28 16:03:30.234][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-06-28 16:03:30.235][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-06-28 16:03:30.236][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:03:30.237][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:03:30.238][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:03:30.242][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:03:30.243][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:03:30.244][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:03:30.244][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-06-28 16:03:30.247][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.29*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-06-28 16:03:30.249][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-06-28 16:03:30.252][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/aad5aa7c63b98774a5df46d96a4e7cac.content.
sched.DEBUG[2025-06-28 16:03:30.253][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-06-28 16:03:30.255][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:03:30.255][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:03:30.256][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:03:30.260][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:03:30.261][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:03:30.262][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:03:30.263][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:03:30.264][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:30.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:30.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:30.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:30.267][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:30.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:30.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:30.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:30.271][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:30.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:30.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:30.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:03:30.274][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:03:30.275][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:03:30.276][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:03:30.280][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:03:30.281][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:03:30.282][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:03:30.282][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:03:30.283][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:30.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:30.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:30.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:30.287][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:30.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:30.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:30.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:30.291][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:30.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:30.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:30.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:03:30.294][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:03:30.295][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:03:30.296][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:03:30.300][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:03:30.301][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:03:30.302][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:03:30.302][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:03:30.303][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:30.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:30.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:30.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:30.307][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:30.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:30.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:30.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:30.311][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:30.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:30.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:30.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:03:30.315][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-06-28 16:03:30.316][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:03:30.317][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:03:30.318][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:03:30.321][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:03:30.322][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:03:30.323][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:03:30.324][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:03:30.325][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:30.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:30.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:30.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:30.329][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:30.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:30.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:30.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:30.332][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:03:30.333][private$selectFields]
biodb.TRACE[2025-06-28 16:03:30.334][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-06-28 16:03:30.335][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-06-28 16:03:30.336][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:03:30.337][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:30.338][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:30.339][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:30.339][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:30.340][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:30.341][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:30.342][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:30.343][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:30.344][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:03:30.345][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:03:30.346][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:30.347][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:30.348][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:30.348][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:30.349][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-06-28 16:03:30.350][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:30.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:30.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:30.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:30.354][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:30.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:30.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:30.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:30.357][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:30.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:30.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:30.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:30.361][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2025-06-28 16:03:30.362][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:03:30.363][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:03:30.364][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:03:30.368][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:03:30.369][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:03:30.370][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:03:30.370][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:03:30.371][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:30.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:30.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:30.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:30.375][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:30.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:30.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:30.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:30.379][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:03:30.380][private$selectFields]
biodb.TRACE[2025-06-28 16:03:30.380][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-06-28 16:03:30.381][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-06-28 16:03:30.382][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:03:30.383][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:30.384][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:30.385][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:30.386][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:30.387][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:30.388][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:30.388][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:30.389][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:30.390][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:03:30.391][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:03:30.392][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:30.393][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:30.394][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:30.395][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:30.396][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-06-28 16:03:30.397][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:30.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:30.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:30.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:30.400][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:30.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:30.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:30.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:30.404][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:30.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:30.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:30.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:30.408][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [91601].
biodb.DEBUG[2025-06-28 16:03:30.409][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:03:30.409][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:03:30.410][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:03:30.414][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:03:30.415][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:03:30.416][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:03:30.417][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:03:30.418][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:30.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:30.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:30.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:30.421][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:30.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:30.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:30.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:30.425][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:03:30.426][private$selectFields]
biodb.TRACE[2025-06-28 16:03:30.427][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-06-28 16:03:30.428][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-06-28 16:03:30.433][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:03:30.434][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:30.436][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:30.437][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:30.438][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:30.439][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:30.440][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:30.440][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:30.441][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:30.442][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:03:30.443][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:03:30.444][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:30.445][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:30.446][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:30.447][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:30.448][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-06-28 16:03:30.449][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:30.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:30.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:30.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:30.452][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:30.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:30.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:30.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:30.456][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:30.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:30.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:30.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:30.460][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [95147].
biodb.DEBUG[2025-06-28 16:03:30.460][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-06-28 16:03:30.461][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-06-28 16:03:30.463][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:03:30.464][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:03:30.465][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:03:30.469][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:03:30.469][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:03:30.470][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:03:30.471][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-06-28 16:03:30.473][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.17*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-06-28 16:03:30.476][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-06-28 16:03:30.479][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/039d0a183be9e894c19f49abb7cadca8.content.
sched.DEBUG[2025-06-28 16:03:30.480][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-06-28 16:03:30.483][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:03:30.484][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:03:30.484][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:03:30.488][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:03:30.489][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:03:30.490][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:03:30.491][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:03:30.492][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:30.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:30.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:30.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:30.495][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:30.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:30.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:30.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:30.499][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:30.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:30.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:30.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:03:30.502][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:03:30.503][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:03:30.504][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:03:30.508][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:03:30.509][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:03:30.510][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:03:30.510][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:03:30.511][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:30.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:30.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:30.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:30.515][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:30.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:30.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:30.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:30.519][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:30.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:30.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:30.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:03:30.522][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:03:30.523][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:03:30.524][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:03:30.528][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:03:30.528][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:03:30.529][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:03:30.530][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:03:30.531][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:30.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:30.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:30.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:30.535][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:30.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:30.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:30.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:30.538][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:30.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:30.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:30.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:03:30.542][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-06-28 16:03:30.544][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:03:30.545][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:03:30.545][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:03:30.549][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:03:30.550][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:03:30.551][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:03:30.552][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:03:30.553][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:30.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:30.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:30.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:30.556][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:30.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:30.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:30.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:30.560][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:03:30.561][private$selectFields]
biodb.TRACE[2025-06-28 16:03:30.562][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-06-28 16:03:30.563][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-06-28 16:03:30.564][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:03:30.565][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:30.565][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:30.566][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:30.567][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:30.568][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:30.569][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:30.570][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:30.571][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:30.572][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:03:30.573][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:03:30.574][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:30.575][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:30.575][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:30.576][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:30.577][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-06-28 16:03:30.578][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:30.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:30.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:30.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:30.582][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:30.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:30.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:30.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:30.585][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:30.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:30.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:30.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:30.589][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [636].
biodb.DEBUG[2025-06-28 16:03:30.590][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:03:30.591][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:03:30.592][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:03:30.596][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:03:30.597][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:03:30.598][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:03:30.598][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:03:30.599][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:30.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:30.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:30.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:30.603][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:30.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:30.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:30.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:30.607][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:03:30.607][private$selectFields]
biodb.TRACE[2025-06-28 16:03:30.608][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-06-28 16:03:30.609][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-06-28 16:03:30.610][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:03:30.611][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:30.612][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:30.613][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:30.614][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:30.615][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:30.616][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:30.616][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:30.617][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:30.618][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:03:30.619][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:03:30.620][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:30.621][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:30.622][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:30.623][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:30.624][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-06-28 16:03:30.625][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:30.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:30.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:30.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:30.628][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:30.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:30.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:30.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:30.632][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:30.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:30.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:30.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:30.636][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [64199].
biodb.DEBUG[2025-06-28 16:03:30.637][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:03:30.637][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:03:30.638][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:03:30.642][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:03:30.643][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:03:30.644][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:03:30.645][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:03:30.646][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:30.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:30.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:30.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:30.649][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:30.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:30.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:30.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:30.653][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:03:30.654][private$selectFields]
biodb.TRACE[2025-06-28 16:03:30.655][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-06-28 16:03:30.656][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-06-28 16:03:30.656][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:03:30.657][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:30.658][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:30.659][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:30.660][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:30.661][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:30.662][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:30.663][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:30.664][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:30.664][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:03:30.665][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:03:30.666][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:30.667][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:30.668][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:30.669][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:30.670][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-06-28 16:03:30.671][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:30.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:30.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:30.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:30.674][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:30.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:30.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:30.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:30.684][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:30.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:30.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:30.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:30.688][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [65648].
biodb.DEBUG[2025-06-28 16:03:30.689][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-06-28 16:03:30.689][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-06-28 16:03:30.706][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:03:30.707][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:03:30.708][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:03:30.711][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:03:30.712][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:03:30.713][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:03:30.714][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-06-28 16:03:30.716][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.3*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-06-28 16:03:30.718][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
sched.DEBUG[2025-06-28 16:03:30.719][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-06-28 16:03:30.720][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-06-28 16:03:30.722][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.3%2A&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL".
sched.TRACE[2025-06-28 16:03:31.074][try_get_rcurl_content] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.3%2A&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL).
fscache.INFO [2025-06-28 16:03:31.425][private$cache$saveContents] Save 1 contents to /home/biocbuild/.cache/R/sched.
fscache.INFO [2025-06-28 16:03:31.431][private$cache$saveContents] Save 1 contents to /home/biocbuild/.cache/R/sched.
sched.DEBUG[2025-06-28 16:03:31.434][self$getBiodb()$getRequestScheduler( ...] Retrieved content saved to cache.
biodb.DEBUG[2025-06-28 16:03:31.440][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:03:31.442][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:03:31.444][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:03:31.454][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:03:31.456][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:03:31.458][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:03:31.460][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:03:31.462][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:31.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:31.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:31.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:31.470][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:31.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:31.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:31.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:31.477][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:31.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:31.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:31.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:03:31.484][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:03:31.485][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:03:31.486][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:03:31.492][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:03:31.493][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:03:31.494][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:03:31.495][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:03:31.497][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:31.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:31.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:31.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:31.501][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:31.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:31.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:31.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:31.506][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:31.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:31.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:31.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:03:31.510][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:03:31.511][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:03:31.512][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:03:31.516][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:03:31.517][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:03:31.518][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:03:31.518][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-28 16:03:31.519][private$loadEntries] Creating entries from ids [1]: "17813".
biodb.DEBUG[2025-06-28 16:03:31.520][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-06-28 16:03:31.522][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
biodb.DEBUG[2025-06-28 16:03:31.523][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-06-28 16:03:31.524][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-06-28 16:03:31.524][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-06-28 16:03:31.525][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-06-28 16:03:31.528][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:03:31.529][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:03:31.529][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:03:31.533][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:03:31.534][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:03:31.535][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:03:31.536][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-06-28 16:03:31.537][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=17813".
fscache.INFO [2025-06-28 16:03:31.539][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
sched.DEBUG[2025-06-28 16:03:31.540][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-06-28 16:03:31.541][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-06-28 16:03:31.542][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=17813".
sched.TRACE[2025-06-28 16:03:31.881][try_get_rcurl_content] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=17813).
fscache.INFO [2025-06-28 16:03:32.230][private$cache$saveContents] Save 1 contents to /home/biocbuild/.cache/R/sched.
fscache.INFO [2025-06-28 16:03:32.235][private$cache$saveContents] Save 1 contents to /home/biocbuild/.cache/R/sched.
sched.DEBUG[2025-06-28 16:03:32.238][scheduler$sendRequest] Retrieved content saved to cache.
fscache.INFO [2025-06-28 16:03:32.241][cch$saveContents] Save 1 contents to /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
biodb.DEBUG[2025-06-28 16:03:32.243][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-06-28 16:03:32.246][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-06-28 16:03:32.249][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-06-28 16:03:32.253][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:03:32.255][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:03:32.257][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:03:32.267][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:03:32.269][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:03:32.271][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:03:32.273][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:03:32.277][ef$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:32.279][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:32.281][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:32.283][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:32.284][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:32.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:32.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:32.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:32.291][ef$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:03:32.292][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:03:32.293][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:32.295][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:32.296][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:03:32.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:03:32.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:32.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:32.301][ef$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:03:32.303][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:03:32.304][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:32.305][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:32.306][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:03:32.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:03:32.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:32.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:32.311][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:03:32.312][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:03:32.313][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:32.314][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:32.315][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:03:32.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:03:32.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:32.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:32.319][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:03:32.320][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:03:32.321][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:32.322][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:32.323][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:03:32.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:03:32.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:32.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:32.327][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:03:32.328][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:03:32.329][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:32.330][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:32.331][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:03:32.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:03:32.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:32.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:32.334][ef$get] Asked field names are: mass.
biodb.TRACE[2025-06-28 16:03:32.335][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:32.336][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:32.337][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:32.338][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-06-28 16:03:32.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:32.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:32.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:32.342][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:32.343][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:32.344][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:32.345][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:32.346][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:32.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:32.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:32.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:32.350][ef$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:03:32.351][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:03:32.352][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:32.352][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:32.354][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:03:32.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:03:32.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:32.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:32.357][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-06-28 16:03:32.358][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:03:32.359][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:32.360][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:32.361][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-06-28 16:03:32.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:03:32.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:32.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:32.365][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:03:32.366][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:03:32.367][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:32.368][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:32.369][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:03:32.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:03:32.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:32.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:32.373][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:32.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:32.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:32.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:32.376][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:32.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:32.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:32.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:32.380][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:32.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:32.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:32.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:32.384][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:32.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:32.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:32.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:32.400][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:32.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:32.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:32.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:32.404][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:32.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:32.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:32.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:32.408][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:32.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:32.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:32.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:32.412][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:32.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:32.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:32.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:32.415][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:32.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:32.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:32.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:32.419][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:32.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:32.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:32.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:03:32.422][self$createEntryFromContent] Accession numbers: 17813.
biodb.TRACE[2025-06-28 16:03:32.423][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:32.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:32.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:32.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:32.427][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:32.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:32.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:32.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:32.430][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:32.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:32.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:32.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:03:32.434][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:03:32.435][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:03:32.436][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:03:32.440][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:03:32.441][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:03:32.442][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:03:32.442][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-28 16:03:32.443][private$loadEntries] Creating entries from ids [1]: "30109".
biodb.DEBUG[2025-06-28 16:03:32.444][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-06-28 16:03:32.446][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
biodb.DEBUG[2025-06-28 16:03:32.447][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-06-28 16:03:32.448][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-06-28 16:03:32.448][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-06-28 16:03:32.449][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-06-28 16:03:32.452][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:03:32.453][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:03:32.453][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:03:32.457][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:03:32.458][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:03:32.459][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:03:32.460][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-06-28 16:03:32.461][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=30109".
fscache.INFO [2025-06-28 16:03:32.463][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
sched.DEBUG[2025-06-28 16:03:32.464][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-06-28 16:03:32.464][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-06-28 16:03:32.466][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=30109".
sched.TRACE[2025-06-28 16:03:33.089][try_get_rcurl_content] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=30109).
fscache.INFO [2025-06-28 16:03:33.443][private$cache$saveContents] Save 1 contents to /home/biocbuild/.cache/R/sched.
fscache.INFO [2025-06-28 16:03:33.448][private$cache$saveContents] Save 1 contents to /home/biocbuild/.cache/R/sched.
sched.DEBUG[2025-06-28 16:03:33.451][scheduler$sendRequest] Retrieved content saved to cache.
fscache.INFO [2025-06-28 16:03:33.454][cch$saveContents] Save 1 contents to /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
biodb.DEBUG[2025-06-28 16:03:33.457][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-06-28 16:03:33.459][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-06-28 16:03:33.462][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-06-28 16:03:33.465][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:03:33.467][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:03:33.469][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:03:33.479][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:03:33.481][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:03:33.483][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:03:33.485][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:03:33.489][ef$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:33.491][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:33.493][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:33.495][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:33.497][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:33.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:33.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:33.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:33.504][ef$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:03:33.505][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:03:33.507][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:33.508][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:33.510][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:03:33.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:03:33.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:33.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:33.515][ef$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:03:33.516][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:03:33.518][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:33.519][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:33.520][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:03:33.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:03:33.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:33.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:33.525][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:03:33.526][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:03:33.527][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:33.528][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:33.529][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:03:33.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:03:33.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:33.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:33.534][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:03:33.535][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:03:33.535][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:33.536][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:33.538][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:03:33.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:03:33.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:33.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:33.541][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:03:33.542][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:03:33.543][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:33.544][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:33.545][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:03:33.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:03:33.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:33.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:33.549][ef$get] Asked field names are: mass.
biodb.TRACE[2025-06-28 16:03:33.550][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:33.551][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:33.552][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:33.553][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-06-28 16:03:33.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:33.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:33.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:33.556][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:33.557][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:33.558][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:33.559][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:33.560][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:33.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:33.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:33.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:33.564][ef$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:03:33.565][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:03:33.566][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:33.567][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:33.568][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:03:33.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:03:33.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:33.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:33.572][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-06-28 16:03:33.572][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:03:33.573][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:33.574][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:33.575][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-06-28 16:03:33.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:03:33.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:33.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:33.579][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:03:33.580][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:03:33.581][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:33.582][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:33.583][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:03:33.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:03:33.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:33.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:33.586][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:33.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:33.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:33.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:33.590][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:33.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:33.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:33.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:33.594][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:33.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:33.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:33.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:33.597][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:33.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:33.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:33.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:33.601][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:33.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:33.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:33.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:33.605][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:33.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:33.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:33.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:33.608][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:33.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:33.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:33.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:33.612][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:33.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:33.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:33.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:33.615][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:33.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:33.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:33.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:33.619][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:33.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:33.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:33.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:03:33.623][self$createEntryFromContent] Accession numbers: 30109.
biodb.TRACE[2025-06-28 16:03:33.624][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:33.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:33.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:33.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:33.627][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:33.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:33.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:33.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:33.631][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:33.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:33.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:33.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:03:33.634][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:03:33.635][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:03:33.636][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:03:33.640][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:03:33.641][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:03:33.642][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:03:33.643][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-28 16:03:33.644][private$loadEntries] Creating entries from ids [1]: "33275".
biodb.DEBUG[2025-06-28 16:03:33.645][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-06-28 16:03:33.646][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
biodb.DEBUG[2025-06-28 16:03:33.647][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-06-28 16:03:33.648][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-06-28 16:03:33.649][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-06-28 16:03:33.650][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-06-28 16:03:33.652][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:03:33.653][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:03:33.654][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:03:33.667][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:03:33.668][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:03:33.669][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:03:33.669][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-06-28 16:03:33.670][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=33275".
fscache.INFO [2025-06-28 16:03:33.672][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
sched.DEBUG[2025-06-28 16:03:33.673][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-06-28 16:03:33.674][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-06-28 16:03:33.675][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=33275".
sched.TRACE[2025-06-28 16:03:34.017][try_get_rcurl_content] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=33275).
fscache.INFO [2025-06-28 16:03:34.376][private$cache$saveContents] Save 1 contents to /home/biocbuild/.cache/R/sched.
fscache.INFO [2025-06-28 16:03:34.380][private$cache$saveContents] Save 1 contents to /home/biocbuild/.cache/R/sched.
sched.DEBUG[2025-06-28 16:03:34.383][scheduler$sendRequest] Retrieved content saved to cache.
fscache.INFO [2025-06-28 16:03:34.386][cch$saveContents] Save 1 contents to /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
biodb.DEBUG[2025-06-28 16:03:34.389][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-06-28 16:03:34.392][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-06-28 16:03:34.394][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-06-28 16:03:34.398][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:03:34.400][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:03:34.402][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:03:34.411][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:03:34.413][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:03:34.415][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:03:34.416][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:03:34.420][ef$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:34.422][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:34.424][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:34.425][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:34.427][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:34.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:34.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:34.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:34.433][ef$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:03:34.434][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:03:34.436][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:34.437][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:34.438][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:03:34.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:03:34.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:34.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:34.443][ef$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:03:34.445][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:03:34.446][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:34.447][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:34.448][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:03:34.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:03:34.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:34.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:34.452][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:03:34.453][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:03:34.454][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:34.455][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:34.457][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:03:34.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:03:34.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:34.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:34.460][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:03:34.461][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:03:34.462][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:34.463][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:34.464][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:03:34.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:03:34.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:34.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:34.468][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:03:34.469][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:03:34.470][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:34.471][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:34.472][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:03:34.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:03:34.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:34.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:34.475][ef$get] Asked field names are: mass.
biodb.TRACE[2025-06-28 16:03:34.476][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:34.477][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:34.478][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:34.479][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-06-28 16:03:34.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:34.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:34.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:34.483][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:34.484][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:34.484][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:34.485][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:34.486][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:34.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:34.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:34.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:34.490][ef$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:03:34.491][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:03:34.492][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:34.493][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:34.494][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:03:34.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:03:34.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:34.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:34.498][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-06-28 16:03:34.499][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:03:34.500][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:34.500][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:34.502][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-06-28 16:03:34.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:03:34.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:34.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:34.505][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:03:34.506][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:03:34.507][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:34.508][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:34.509][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:03:34.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:03:34.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:34.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:34.513][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:34.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:34.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:34.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:34.516][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:34.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:34.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:34.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:34.520][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:34.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:34.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:34.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:34.524][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:34.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:34.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:34.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:34.527][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:34.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:34.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:34.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:34.531][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:34.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:34.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:34.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:34.535][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:34.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:34.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:34.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:34.538][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:34.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:34.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:34.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:34.542][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:34.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:34.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:34.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:34.545][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:34.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:34.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:34.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:03:34.549][self$createEntryFromContent] Accession numbers: 33275.
biodb.TRACE[2025-06-28 16:03:34.550][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:34.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:34.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:34.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:34.554][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:34.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:34.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:34.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:34.557][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:34.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:34.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:34.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:03:34.561][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:03:34.562][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:03:34.563][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:03:34.567][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:03:34.567][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:03:34.568][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:03:34.569][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-28 16:03:34.570][private$loadEntries] Creating entries from ids [1]: "33277".
biodb.DEBUG[2025-06-28 16:03:34.571][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-06-28 16:03:34.572][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
biodb.DEBUG[2025-06-28 16:03:34.573][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-06-28 16:03:34.574][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-06-28 16:03:34.575][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-06-28 16:03:34.576][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-06-28 16:03:34.578][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:03:34.579][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:03:34.580][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:03:34.584][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:03:34.585][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:03:34.585][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:03:34.586][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-06-28 16:03:34.587][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=33277".
fscache.INFO [2025-06-28 16:03:34.589][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
sched.DEBUG[2025-06-28 16:03:34.590][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-06-28 16:03:34.591][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-06-28 16:03:34.592][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=33277".
sched.TRACE[2025-06-28 16:03:34.931][try_get_rcurl_content] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=33277).
fscache.INFO [2025-06-28 16:03:35.282][private$cache$saveContents] Save 1 contents to /home/biocbuild/.cache/R/sched.
fscache.INFO [2025-06-28 16:03:35.287][private$cache$saveContents] Save 1 contents to /home/biocbuild/.cache/R/sched.
sched.DEBUG[2025-06-28 16:03:35.290][scheduler$sendRequest] Retrieved content saved to cache.
fscache.INFO [2025-06-28 16:03:35.293][cch$saveContents] Save 1 contents to /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
biodb.DEBUG[2025-06-28 16:03:35.295][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-06-28 16:03:35.298][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-06-28 16:03:35.300][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-06-28 16:03:35.304][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:03:35.306][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:03:35.308][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:03:35.317][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:03:35.319][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:03:35.321][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:03:35.323][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:03:35.327][ef$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:35.329][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:35.331][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:35.333][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:35.335][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:35.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:35.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:35.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:35.341][ef$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:03:35.343][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:03:35.344][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:35.345][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:35.347][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:03:35.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:03:35.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:35.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:35.352][ef$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:03:35.353][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:03:35.355][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:35.356][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:35.357][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:03:35.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:03:35.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:35.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:35.362][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:03:35.375][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:03:35.376][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:35.377][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:35.378][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:03:35.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:03:35.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:35.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:35.382][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:03:35.383][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:03:35.384][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:35.385][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:35.386][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:03:35.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:03:35.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:35.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:35.390][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:03:35.391][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:03:35.391][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:35.392][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:35.393][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:03:35.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:03:35.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:35.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:35.397][ef$get] Asked field names are: mass.
biodb.TRACE[2025-06-28 16:03:35.398][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:35.399][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:35.400][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:35.401][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-06-28 16:03:35.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:35.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:35.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:35.404][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:35.405][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:35.406][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:35.407][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:35.408][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:35.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:35.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:35.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:35.412][ef$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:03:35.413][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:03:35.414][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:35.414][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:35.416][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:03:35.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:03:35.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:35.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:35.419][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-06-28 16:03:35.420][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:03:35.421][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:35.422][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:35.423][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-06-28 16:03:35.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:03:35.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:35.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:35.427][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:03:35.427][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:03:35.428][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:35.429][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:35.430][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:03:35.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:03:35.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:35.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:35.434][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:35.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:35.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:35.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:35.438][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:35.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:35.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:35.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:35.441][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:35.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:35.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:35.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:35.445][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:35.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:35.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:35.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:35.448][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:35.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:35.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:35.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:35.452][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:35.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:35.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:35.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:35.455][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:35.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:35.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:35.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:35.459][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:35.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:35.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:35.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:35.463][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:35.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:35.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:35.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:35.466][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:35.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:35.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:35.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:03:35.470][self$createEntryFromContent] Accession numbers: 33277.
biodb.TRACE[2025-06-28 16:03:35.471][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:35.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:35.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:35.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:35.475][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:35.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:35.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:35.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:35.478][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:35.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:35.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:35.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:03:35.482][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:03:35.483][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:03:35.483][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:03:35.487][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:03:35.488][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:03:35.489][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:03:35.490][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-28 16:03:35.491][private$loadEntries] Creating entries from ids [1]: "52421".
biodb.DEBUG[2025-06-28 16:03:35.492][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-06-28 16:03:35.493][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
biodb.DEBUG[2025-06-28 16:03:35.494][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-06-28 16:03:35.495][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-06-28 16:03:35.496][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-06-28 16:03:35.497][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-06-28 16:03:35.499][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:03:35.500][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:03:35.501][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:03:35.505][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:03:35.506][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:03:35.506][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:03:35.507][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-06-28 16:03:35.508][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=52421".
fscache.INFO [2025-06-28 16:03:35.510][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
sched.DEBUG[2025-06-28 16:03:35.511][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-06-28 16:03:35.512][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-06-28 16:03:35.513][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=52421".
sched.TRACE[2025-06-28 16:03:35.850][try_get_rcurl_content] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=52421).
fscache.INFO [2025-06-28 16:03:36.197][private$cache$saveContents] Save 1 contents to /home/biocbuild/.cache/R/sched.
fscache.INFO [2025-06-28 16:03:36.200][private$cache$saveContents] Save 1 contents to /home/biocbuild/.cache/R/sched.
sched.DEBUG[2025-06-28 16:03:36.202][scheduler$sendRequest] Retrieved content saved to cache.
fscache.INFO [2025-06-28 16:03:36.203][cch$saveContents] Save 1 contents to /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
biodb.DEBUG[2025-06-28 16:03:36.205][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-06-28 16:03:36.207][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-06-28 16:03:36.208][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-06-28 16:03:36.210][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:03:36.212][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:03:36.213][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:03:36.219][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:03:36.220][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:03:36.221][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:03:36.222][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:03:36.225][ef$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:36.227][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:36.228][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:36.229][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:36.231][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:36.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:36.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:36.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:36.237][ef$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:03:36.238][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:03:36.239][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:36.240][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:36.242][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:03:36.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:03:36.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:36.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:36.247][ef$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:03:36.248][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:03:36.249][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:36.250][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:36.252][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:03:36.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:03:36.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:36.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:36.256][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:03:36.257][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:03:36.258][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:36.259][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:36.260][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:03:36.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:03:36.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:36.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:36.264][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:03:36.265][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:03:36.266][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:36.267][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:36.268][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:03:36.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:03:36.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:36.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:36.272][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:03:36.273][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:03:36.274][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:36.275][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:36.276][ef$get] Asked field names are: mass.
biodb.TRACE[2025-06-28 16:03:36.277][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:36.278][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:36.278][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:36.279][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-06-28 16:03:36.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:36.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:36.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:36.283][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:36.284][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:36.285][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:36.286][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:36.287][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:36.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:36.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:36.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:36.291][ef$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:03:36.292][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:03:36.292][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:36.293][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:36.294][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:03:36.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:03:36.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:36.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:36.298][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-06-28 16:03:36.299][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:03:36.300][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:36.301][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:36.302][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-06-28 16:03:36.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:03:36.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:36.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:36.306][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:03:36.307][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:03:36.307][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:36.308][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:36.309][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:03:36.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:03:36.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:36.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:36.322][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:36.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:36.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:36.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:36.326][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:36.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:36.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:36.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:36.330][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:36.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:36.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:36.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:36.333][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:36.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:36.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:36.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:36.337][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:36.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:36.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:36.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:36.341][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:36.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:36.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:36.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:36.344][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:36.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:36.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:36.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:36.348][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:36.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:36.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:36.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:36.351][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:36.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:36.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:36.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:36.355][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:36.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:36.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:36.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:03:36.359][self$createEntryFromContent] Accession numbers: 52421.
biodb.TRACE[2025-06-28 16:03:36.360][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:36.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:36.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:36.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:36.363][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:36.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:36.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:36.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:36.367][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:36.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:36.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:36.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:03:36.370][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:03:36.371][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:03:36.372][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:03:36.376][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:03:36.377][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:03:36.377][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:03:36.378][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:03:36.379][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:36.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:36.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:36.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:36.383][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:36.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:36.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:36.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:36.386][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:36.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:36.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:36.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:03:36.390][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-06-28 16:03:36.392][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:03:36.392][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:03:36.393][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:03:36.397][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:03:36.398][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:03:36.399][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:03:36.399][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:03:36.401][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:36.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:36.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:36.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:36.404][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:36.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:36.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:36.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:36.408][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:03:36.409][private$selectFields]
biodb.TRACE[2025-06-28 16:03:36.409][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-06-28 16:03:36.410][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-06-28 16:03:36.411][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:03:36.412][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:36.413][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:36.414][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:36.415][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:36.416][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:36.417][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:36.417][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:36.418][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:36.419][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:03:36.420][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:03:36.421][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:36.422][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:36.423][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:36.424][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:36.425][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-06-28 16:03:36.426][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:36.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:36.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:36.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:36.429][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:36.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:36.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:36.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:36.433][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:36.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:36.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:36.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:36.437][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4648].
biodb.DEBUG[2025-06-28 16:03:36.438][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:03:36.439][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:03:36.439][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:03:36.443][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:03:36.444][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:03:36.445][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:03:36.446][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:03:36.447][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:36.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:36.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:36.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:36.450][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:36.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:36.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:36.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:36.454][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:03:36.455][private$selectFields]
biodb.TRACE[2025-06-28 16:03:36.456][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-06-28 16:03:36.457][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-06-28 16:03:36.457][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:03:36.458][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:36.459][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:36.460][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:36.461][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:36.462][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:36.463][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:36.464][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:36.465][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:36.465][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:03:36.466][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:03:36.467][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:36.468][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:36.469][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:36.470][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:36.471][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-06-28 16:03:36.472][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:36.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:36.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:36.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:36.475][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:36.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:36.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:36.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:36.479][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:36.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:36.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:36.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:36.483][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2025-06-28 16:03:36.484][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:03:36.485][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:03:36.485][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:03:36.489][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:03:36.490][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:03:36.491][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:03:36.492][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:03:36.493][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:36.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:36.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:36.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:36.496][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:36.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:36.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:36.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:36.500][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:03:36.501][private$selectFields]
biodb.TRACE[2025-06-28 16:03:36.502][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-06-28 16:03:36.503][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-06-28 16:03:36.503][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:03:36.504][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:36.505][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:36.506][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:36.507][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:36.508][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:36.509][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:36.510][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:36.511][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:36.512][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:03:36.512][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:03:36.513][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:36.514][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:36.515][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:36.516][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:36.517][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-06-28 16:03:36.518][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:36.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:36.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:36.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:36.522][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:36.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:36.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:36.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:36.525][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:36.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:36.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:36.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:36.529][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [62447].
biodb.DEBUG[2025-06-28 16:03:36.530][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-06-28 16:03:36.531][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-06-28 16:03:36.533][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:03:36.533][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:03:36.534][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:03:36.538][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:03:36.539][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:03:36.540][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:03:36.541][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-06-28 16:03:36.543][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.2*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-06-28 16:03:36.545][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
sched.DEBUG[2025-06-28 16:03:36.546][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-06-28 16:03:36.547][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-06-28 16:03:36.549][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.2%2A&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL".
sched.TRACE[2025-06-28 16:03:36.903][try_get_rcurl_content] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.2%2A&searchCategory=MONOISOTOPIC%20MASS&maximumResults=0&starsCategory=ALL).
fscache.INFO [2025-06-28 16:03:37.581][private$cache$saveContents] Save 1 contents to /home/biocbuild/.cache/R/sched.
fscache.INFO [2025-06-28 16:03:37.587][private$cache$saveContents] Save 1 contents to /home/biocbuild/.cache/R/sched.
sched.DEBUG[2025-06-28 16:03:37.590][self$getBiodb()$getRequestScheduler( ...] Retrieved content saved to cache.
biodb.DEBUG[2025-06-28 16:03:37.620][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:03:37.622][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:03:37.623][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:03:37.631][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:03:37.633][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:03:37.634][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:03:37.635][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:03:37.637][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:37.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:37.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:37.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:37.643][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:37.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:37.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:37.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:37.648][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:37.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:37.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:37.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:03:37.653][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:03:37.654][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:03:37.655][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:03:37.659][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:03:37.660][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:03:37.661][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:03:37.662][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:03:37.663][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:37.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:37.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:37.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:37.667][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:37.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:37.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:37.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:37.671][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:37.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:37.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:37.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:03:37.674][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:03:37.675][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:03:37.676][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:03:37.680][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:03:37.681][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:03:37.681][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:03:37.682][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-28 16:03:37.683][private$loadEntries] Creating entries from ids [1]: "65567".
biodb.DEBUG[2025-06-28 16:03:37.684][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-06-28 16:03:37.685][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
biodb.DEBUG[2025-06-28 16:03:37.686][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-06-28 16:03:37.687][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-06-28 16:03:37.688][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-06-28 16:03:37.689][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-06-28 16:03:37.692][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:03:37.692][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:03:37.693][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:03:37.697][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:03:37.698][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:03:37.699][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:03:37.700][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-06-28 16:03:37.701][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=65567".
fscache.INFO [2025-06-28 16:03:37.702][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
sched.DEBUG[2025-06-28 16:03:37.703][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-06-28 16:03:37.704][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-06-28 16:03:37.705][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=65567".
sched.TRACE[2025-06-28 16:03:38.044][try_get_rcurl_content] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=65567).
fscache.INFO [2025-06-28 16:03:38.386][private$cache$saveContents] Save 1 contents to /home/biocbuild/.cache/R/sched.
fscache.INFO [2025-06-28 16:03:38.389][private$cache$saveContents] Save 1 contents to /home/biocbuild/.cache/R/sched.
sched.DEBUG[2025-06-28 16:03:38.390][scheduler$sendRequest] Retrieved content saved to cache.
fscache.INFO [2025-06-28 16:03:38.392][cch$saveContents] Save 1 contents to /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
biodb.DEBUG[2025-06-28 16:03:38.393][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-06-28 16:03:38.394][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-06-28 16:03:38.395][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-06-28 16:03:38.397][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:03:38.398][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:03:38.399][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:03:38.403][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:03:38.404][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:03:38.405][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:03:38.406][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:03:38.408][ef$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:38.410][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:38.411][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:38.411][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:38.413][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:38.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:38.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:38.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:38.417][ef$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:03:38.418][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:03:38.419][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:38.420][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:38.421][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:03:38.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:03:38.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:38.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:38.425][ef$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:03:38.426][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:03:38.427][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:38.428][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:38.429][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:03:38.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:03:38.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:38.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:38.433][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:03:38.434][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:03:38.435][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:38.436][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:38.437][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:03:38.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:03:38.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:38.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:38.441][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:03:38.442][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:03:38.443][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:38.444][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:38.445][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:03:38.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:03:38.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:38.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:38.449][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:03:38.450][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:03:38.451][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:38.452][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:38.453][ef$get] Asked field names are: mass.
biodb.TRACE[2025-06-28 16:03:38.454][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:38.455][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:38.456][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:38.458][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-06-28 16:03:38.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:38.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:38.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:38.462][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:38.463][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:38.463][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:38.464][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:38.466][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:38.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:38.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:38.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:38.470][ef$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:03:38.471][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:03:38.471][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:38.472][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:38.474][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:03:38.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:03:38.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:38.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:38.478][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-06-28 16:03:38.479][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:03:38.480][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:38.481][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:38.482][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-06-28 16:03:38.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:03:38.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:38.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:38.486][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:03:38.487][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:03:38.488][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:38.489][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:38.490][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:03:38.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:03:38.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:38.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:38.494][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:38.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:38.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:38.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:38.498][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:38.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:38.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:38.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:38.502][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:38.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:38.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:38.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:38.505][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:38.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:38.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:38.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:38.509][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:38.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:38.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:38.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:38.513][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:38.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:38.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:38.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:38.517][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:38.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:38.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:38.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:38.521][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:38.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:38.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:38.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:38.525][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:38.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:38.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:38.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:38.529][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:38.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:38.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:38.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:03:38.533][self$createEntryFromContent] Accession numbers: 65567.
biodb.TRACE[2025-06-28 16:03:38.534][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:38.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:38.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:38.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:38.538][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:38.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:38.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:38.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:38.542][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:38.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:38.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:38.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:03:38.546][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:03:38.546][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:03:38.547][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:03:38.552][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:03:38.553][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:03:38.554][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:03:38.555][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-28 16:03:38.556][private$loadEntries] Creating entries from ids [1]: "65576".
biodb.DEBUG[2025-06-28 16:03:38.557][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-06-28 16:03:38.558][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
biodb.DEBUG[2025-06-28 16:03:38.560][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-06-28 16:03:38.561][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-06-28 16:03:38.574][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-06-28 16:03:38.575][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-06-28 16:03:38.578][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:03:38.579][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:03:38.580][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:03:38.585][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:03:38.585][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:03:38.586][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:03:38.587][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-06-28 16:03:38.588][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=65576".
fscache.INFO [2025-06-28 16:03:38.590][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
sched.DEBUG[2025-06-28 16:03:38.591][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-06-28 16:03:38.592][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-06-28 16:03:38.593][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=65576".
sched.TRACE[2025-06-28 16:03:38.934][try_get_rcurl_content] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=65576).
fscache.INFO [2025-06-28 16:03:39.285][private$cache$saveContents] Save 1 contents to /home/biocbuild/.cache/R/sched.
fscache.INFO [2025-06-28 16:03:39.290][private$cache$saveContents] Save 1 contents to /home/biocbuild/.cache/R/sched.
sched.DEBUG[2025-06-28 16:03:39.293][scheduler$sendRequest] Retrieved content saved to cache.
fscache.INFO [2025-06-28 16:03:39.296][cch$saveContents] Save 1 contents to /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
biodb.DEBUG[2025-06-28 16:03:39.298][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-06-28 16:03:39.301][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-06-28 16:03:39.304][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-06-28 16:03:39.307][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:03:39.309][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:03:39.311][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:03:39.321][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:03:39.323][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:03:39.325][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:03:39.327][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:03:39.331][ef$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:39.333][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:39.335][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:39.336][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:39.338][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:39.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:39.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:39.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:39.345][ef$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:03:39.346][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:03:39.348][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:39.349][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:39.351][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:03:39.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:03:39.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:39.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:39.356][ef$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:03:39.357][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:03:39.358][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:39.359][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:39.361][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:03:39.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:03:39.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:39.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:39.365][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:03:39.367][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:03:39.368][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:39.368][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:39.370][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:03:39.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:03:39.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:39.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:39.374][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:03:39.375][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:03:39.376][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:39.377][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:39.378][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:03:39.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:03:39.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:39.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:39.381][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:03:39.382][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:03:39.383][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:39.384][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:39.385][ef$get] Asked field names are: mass.
biodb.TRACE[2025-06-28 16:03:39.386][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:39.387][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:39.388][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:39.389][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-06-28 16:03:39.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:39.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:39.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:39.393][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:39.394][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:39.395][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:39.396][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:39.397][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:39.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:39.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:39.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:39.400][ef$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:03:39.401][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:03:39.402][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:39.403][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:39.404][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:03:39.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:03:39.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:39.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:39.408][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-06-28 16:03:39.409][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:03:39.410][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:39.411][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:39.412][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-06-28 16:03:39.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:03:39.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:39.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:39.416][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:03:39.417][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:03:39.418][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:39.419][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:39.420][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:03:39.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:03:39.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:39.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:39.424][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:39.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:39.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:39.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:39.427][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:39.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:39.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:39.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:39.431][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:39.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:39.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:39.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:39.435][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:39.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:39.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:39.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:39.439][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:39.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:39.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:39.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:39.442][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:39.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:39.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:39.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:39.446][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:39.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:39.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:39.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:39.450][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:39.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:39.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:39.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:39.454][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:39.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:39.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:39.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:39.457][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:39.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:39.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:39.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:03:39.461][self$createEntryFromContent] Accession numbers: 65576.
biodb.TRACE[2025-06-28 16:03:39.462][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:39.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:39.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:39.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:39.466][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:39.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:39.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:39.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:39.469][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:39.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:39.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:39.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:03:39.473][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:03:39.474][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:03:39.475][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:03:39.479][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:03:39.480][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:03:39.481][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:03:39.481][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-28 16:03:39.482][private$loadEntries] Creating entries from ids [1]: "66352".
biodb.DEBUG[2025-06-28 16:03:39.483][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-06-28 16:03:39.485][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
biodb.DEBUG[2025-06-28 16:03:39.486][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-06-28 16:03:39.487][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-06-28 16:03:39.488][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-06-28 16:03:39.489][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-06-28 16:03:39.491][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:03:39.492][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:03:39.493][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:03:39.497][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:03:39.497][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:03:39.498][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:03:39.499][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-06-28 16:03:39.500][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=66352".
fscache.INFO [2025-06-28 16:03:39.502][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
sched.DEBUG[2025-06-28 16:03:39.503][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-06-28 16:03:39.504][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-06-28 16:03:39.505][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=66352".
sched.TRACE[2025-06-28 16:03:39.849][try_get_rcurl_content] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=66352).
fscache.INFO [2025-06-28 16:03:40.199][private$cache$saveContents] Save 1 contents to /home/biocbuild/.cache/R/sched.
fscache.INFO [2025-06-28 16:03:40.204][private$cache$saveContents] Save 1 contents to /home/biocbuild/.cache/R/sched.
sched.DEBUG[2025-06-28 16:03:40.207][scheduler$sendRequest] Retrieved content saved to cache.
fscache.INFO [2025-06-28 16:03:40.210][cch$saveContents] Save 1 contents to /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
biodb.DEBUG[2025-06-28 16:03:40.213][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-06-28 16:03:40.215][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-06-28 16:03:40.218][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-06-28 16:03:40.222][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:03:40.224][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:03:40.226][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:03:40.236][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:03:40.238][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:03:40.240][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:03:40.242][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:03:40.246][ef$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:40.248][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:40.250][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:40.251][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:40.253][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:40.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:40.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:40.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:40.259][ef$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:03:40.261][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:03:40.262][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:40.263][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:40.265][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:03:40.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:03:40.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:40.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:40.270][ef$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:03:40.272][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:03:40.273][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:40.274][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:40.275][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:03:40.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:03:40.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:40.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:40.293][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:03:40.294][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:03:40.295][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:40.295][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:40.297][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:03:40.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:03:40.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:40.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:40.300][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:03:40.301][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:03:40.302][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:40.303][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:40.304][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:03:40.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:03:40.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:40.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:40.308][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:03:40.309][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:03:40.310][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:40.310][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:40.312][ef$get] Asked field names are: mass.
biodb.TRACE[2025-06-28 16:03:40.313][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:40.313][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:40.314][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:40.315][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-06-28 16:03:40.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:40.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:40.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:40.319][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:40.320][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:40.321][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:40.322][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:40.323][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:40.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:40.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:40.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:40.326][ef$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:03:40.327][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:03:40.328][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:40.329][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:40.330][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:03:40.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:03:40.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:40.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:40.334][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-06-28 16:03:40.335][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:03:40.336][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:40.336][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:40.337][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-06-28 16:03:40.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:03:40.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:40.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:40.341][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:03:40.342][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:03:40.343][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:40.344][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:40.345][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:03:40.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:03:40.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:40.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:40.349][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:40.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:40.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:40.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:40.352][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:40.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:40.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:40.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:40.356][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:40.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:40.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:40.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:40.359][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:40.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:40.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:40.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:40.363][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:40.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:40.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:40.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:40.366][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:40.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:40.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:40.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:40.370][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:40.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:40.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:40.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:40.374][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:40.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:40.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:40.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:40.377][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:40.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:40.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:40.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:40.381][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:40.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:40.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:40.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:03:40.385][self$createEntryFromContent] Accession numbers: 66352.
biodb.TRACE[2025-06-28 16:03:40.386][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:40.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:40.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:40.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:40.389][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:40.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:40.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:40.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:40.393][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:40.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:40.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:40.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:03:40.397][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:03:40.397][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:03:40.398][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:03:40.402][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:03:40.403][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:03:40.404][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:03:40.405][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-28 16:03:40.406][private$loadEntries] Creating entries from ids [1]: "67567".
biodb.DEBUG[2025-06-28 16:03:40.407][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-06-28 16:03:40.408][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
biodb.DEBUG[2025-06-28 16:03:40.409][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-06-28 16:03:40.410][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-06-28 16:03:40.411][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-06-28 16:03:40.412][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-06-28 16:03:40.414][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:03:40.415][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:03:40.416][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:03:40.420][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:03:40.421][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:03:40.422][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:03:40.422][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-06-28 16:03:40.423][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67567".
fscache.INFO [2025-06-28 16:03:40.425][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
sched.DEBUG[2025-06-28 16:03:40.426][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-06-28 16:03:40.427][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-06-28 16:03:40.428][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67567".
sched.TRACE[2025-06-28 16:03:40.781][try_get_rcurl_content] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67567).
fscache.INFO [2025-06-28 16:03:41.133][private$cache$saveContents] Save 1 contents to /home/biocbuild/.cache/R/sched.
fscache.INFO [2025-06-28 16:03:41.139][private$cache$saveContents] Save 1 contents to /home/biocbuild/.cache/R/sched.
sched.DEBUG[2025-06-28 16:03:41.141][scheduler$sendRequest] Retrieved content saved to cache.
fscache.INFO [2025-06-28 16:03:41.145][cch$saveContents] Save 1 contents to /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
biodb.DEBUG[2025-06-28 16:03:41.147][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-06-28 16:03:41.150][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-06-28 16:03:41.153][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-06-28 16:03:41.157][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:03:41.159][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:03:41.161][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:03:41.171][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:03:41.173][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:03:41.174][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:03:41.176][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:03:41.180][ef$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:41.182][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:41.184][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:41.186][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:41.188][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:41.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:41.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:41.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:41.194][ef$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:03:41.196][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:03:41.197][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:41.198][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:41.200][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:03:41.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:03:41.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:41.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:41.205][ef$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:03:41.207][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:03:41.208][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:41.209][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:41.210][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:03:41.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:03:41.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:41.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:41.215][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:03:41.216][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:03:41.217][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:41.218][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:41.219][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:03:41.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:03:41.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:41.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:41.224][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:03:41.225][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:03:41.226][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:41.227][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:41.228][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:03:41.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:03:41.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:41.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:41.232][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:03:41.233][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:03:41.234][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:41.235][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:41.236][ef$get] Asked field names are: mass.
biodb.TRACE[2025-06-28 16:03:41.237][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:41.238][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:41.239][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:41.240][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-06-28 16:03:41.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:41.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:41.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:41.244][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:41.245][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:41.246][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:41.247][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:41.248][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:41.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:41.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:41.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:41.252][ef$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:03:41.253][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:03:41.254][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:41.255][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:41.256][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:03:41.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:03:41.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:41.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:41.260][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-06-28 16:03:41.261][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:03:41.262][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:41.263][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:41.264][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-06-28 16:03:41.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:03:41.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:41.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:41.268][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:03:41.270][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:03:41.270][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:41.271][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:41.273][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:03:41.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:03:41.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:41.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:41.290][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:41.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:41.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:41.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:41.294][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:41.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:41.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:41.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:41.298][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:41.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:41.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:41.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:41.302][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:41.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:41.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:41.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:41.306][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:41.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:41.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:41.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:41.310][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:41.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:41.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:41.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:41.314][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:41.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:41.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:41.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:41.318][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:41.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:41.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:41.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:41.321][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:41.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:41.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:41.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:41.325][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:41.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:41.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:41.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:03:41.329][self$createEntryFromContent] Accession numbers: 67567.
biodb.TRACE[2025-06-28 16:03:41.330][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:41.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:41.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:41.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:41.334][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:41.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:41.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:41.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:41.337][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:41.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:41.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:41.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:03:41.341][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:03:41.342][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:03:41.343][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:03:41.348][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:03:41.349][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:03:41.350][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:03:41.351][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-28 16:03:41.352][private$loadEntries] Creating entries from ids [1]: "67693".
biodb.DEBUG[2025-06-28 16:03:41.353][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-06-28 16:03:41.354][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
biodb.DEBUG[2025-06-28 16:03:41.355][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-06-28 16:03:41.356][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-06-28 16:03:41.357][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-06-28 16:03:41.358][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-06-28 16:03:41.361][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:03:41.362][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:03:41.362][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:03:41.367][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:03:41.368][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:03:41.369][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:03:41.369][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-06-28 16:03:41.370][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67693".
fscache.INFO [2025-06-28 16:03:41.372][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
sched.DEBUG[2025-06-28 16:03:41.373][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-06-28 16:03:41.374][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-06-28 16:03:41.376][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67693".
sched.TRACE[2025-06-28 16:03:41.738][try_get_rcurl_content] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67693).
fscache.INFO [2025-06-28 16:03:42.114][private$cache$saveContents] Save 1 contents to /home/biocbuild/.cache/R/sched.
fscache.INFO [2025-06-28 16:03:42.119][private$cache$saveContents] Save 1 contents to /home/biocbuild/.cache/R/sched.
sched.DEBUG[2025-06-28 16:03:42.122][scheduler$sendRequest] Retrieved content saved to cache.
fscache.INFO [2025-06-28 16:03:42.125][cch$saveContents] Save 1 contents to /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
biodb.DEBUG[2025-06-28 16:03:42.127][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-06-28 16:03:42.130][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-06-28 16:03:42.133][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-06-28 16:03:42.136][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:03:42.138][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:03:42.140][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:03:42.150][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:03:42.152][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:03:42.154][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:03:42.155][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:03:42.160][ef$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:42.162][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:42.164][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:42.165][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:42.167][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:42.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:42.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:42.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:42.173][ef$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:03:42.175][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:03:42.176][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:42.177][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:42.179][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:03:42.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:03:42.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:42.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:42.184][ef$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:03:42.185][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:03:42.186][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:42.187][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:42.189][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:03:42.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:03:42.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:42.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:42.193][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:03:42.194][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:03:42.195][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:42.196][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:42.198][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:03:42.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:03:42.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:42.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:42.202][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:03:42.203][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:03:42.204][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:42.205][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:42.206][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:03:42.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:03:42.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:42.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:42.209][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:03:42.210][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:03:42.211][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:42.212][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:42.213][ef$get] Asked field names are: mass.
biodb.TRACE[2025-06-28 16:03:42.214][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:42.215][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:42.216][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:42.217][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-06-28 16:03:42.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:42.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:42.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:42.221][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:42.222][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:42.223][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:42.224][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:42.225][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:42.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:42.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:42.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:42.228][ef$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:03:42.229][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:03:42.230][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:42.231][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:42.232][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:03:42.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:03:42.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:42.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:42.236][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-06-28 16:03:42.237][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:03:42.238][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:42.239][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:42.240][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-06-28 16:03:42.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:03:42.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:42.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:42.244][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:03:42.245][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:03:42.245][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:42.246][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:42.247][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:03:42.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:03:42.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:42.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:42.251][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:42.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:42.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:42.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:42.255][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:42.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:42.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:42.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:42.259][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:42.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:42.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:42.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:42.262][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:42.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:42.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:42.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:42.266][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:42.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:42.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:42.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:42.269][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:42.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:42.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:42.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:42.273][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:42.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:42.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:42.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:42.277][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:42.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:42.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:42.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:42.281][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:42.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:42.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:42.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:42.284][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:42.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:42.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:42.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:03:42.288][self$createEntryFromContent] Accession numbers: 67693.
biodb.TRACE[2025-06-28 16:03:42.289][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:42.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:42.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:42.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:42.293][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:42.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:42.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:42.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:42.296][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:42.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:42.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:42.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:03:42.300][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:03:42.301][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:03:42.302][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:03:42.306][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:03:42.307][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:03:42.324][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:03:42.325][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-28 16:03:42.326][private$loadEntries] Creating entries from ids [1]: "67700".
biodb.DEBUG[2025-06-28 16:03:42.327][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-06-28 16:03:42.329][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
biodb.DEBUG[2025-06-28 16:03:42.330][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-06-28 16:03:42.331][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-06-28 16:03:42.332][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-06-28 16:03:42.333][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-06-28 16:03:42.335][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:03:42.336][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:03:42.337][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:03:42.341][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:03:42.342][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:03:42.343][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:03:42.344][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-06-28 16:03:42.345][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67700".
fscache.INFO [2025-06-28 16:03:42.347][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
sched.DEBUG[2025-06-28 16:03:42.348][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-06-28 16:03:42.349][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-06-28 16:03:42.350][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67700".
sched.TRACE[2025-06-28 16:03:42.976][try_get_rcurl_content] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67700).
fscache.INFO [2025-06-28 16:03:43.326][private$cache$saveContents] Save 1 contents to /home/biocbuild/.cache/R/sched.
fscache.INFO [2025-06-28 16:03:43.330][private$cache$saveContents] Save 1 contents to /home/biocbuild/.cache/R/sched.
sched.DEBUG[2025-06-28 16:03:43.333][scheduler$sendRequest] Retrieved content saved to cache.
fscache.INFO [2025-06-28 16:03:43.336][cch$saveContents] Save 1 contents to /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
biodb.DEBUG[2025-06-28 16:03:43.338][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-06-28 16:03:43.341][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-06-28 16:03:43.344][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-06-28 16:03:43.347][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:03:43.349][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:03:43.351][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:03:43.361][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:03:43.363][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:03:43.365][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:03:43.367][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:03:43.371][ef$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:43.373][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:43.374][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:43.376][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:43.378][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:43.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:43.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:43.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:43.384][ef$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:03:43.386][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:03:43.387][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:43.388][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:43.390][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:03:43.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:03:43.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:43.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:43.395][ef$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:03:43.397][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:03:43.398][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:43.399][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:43.400][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:03:43.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:03:43.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:43.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:43.405][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:03:43.406][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:03:43.407][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:43.408][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:43.409][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:03:43.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:03:43.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:43.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:43.413][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:03:43.414][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:03:43.415][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:43.416][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:43.417][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:03:43.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:03:43.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:43.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:43.420][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:03:43.421][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:03:43.422][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:43.423][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:43.424][ef$get] Asked field names are: mass.
biodb.TRACE[2025-06-28 16:03:43.425][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:43.426][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:43.427][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:43.428][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-06-28 16:03:43.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:43.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:43.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:43.432][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:43.433][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:43.434][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:43.434][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:43.436][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:43.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:43.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:43.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:43.439][ef$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:03:43.440][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:03:43.441][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:43.442][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:43.443][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:03:43.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:03:43.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:43.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:43.447][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-06-28 16:03:43.448][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:03:43.449][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:43.450][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:43.451][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-06-28 16:03:43.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:03:43.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:43.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:43.455][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:03:43.456][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:03:43.457][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:43.457][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:43.459][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:03:43.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:03:43.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:43.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:43.462][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:43.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:43.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:43.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:43.466][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:43.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:43.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:43.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:43.470][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:43.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:43.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:43.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:43.473][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:43.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:43.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:43.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:43.477][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:43.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:43.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:43.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:43.481][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:43.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:43.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:43.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:43.484][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:43.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:43.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:43.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:43.488][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:43.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:43.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:43.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:43.492][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:43.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:43.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:43.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:43.495][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:43.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:43.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:43.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:03:43.499][self$createEntryFromContent] Accession numbers: 67700.
biodb.TRACE[2025-06-28 16:03:43.500][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:43.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:43.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:43.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:43.504][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:43.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:43.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:43.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:43.507][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:43.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:43.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:43.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:03:43.511][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:03:43.512][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:03:43.513][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:03:43.517][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:03:43.518][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:03:43.518][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:03:43.519][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-28 16:03:43.520][private$loadEntries] Creating entries from ids [1]: "67701".
biodb.DEBUG[2025-06-28 16:03:43.521][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-06-28 16:03:43.523][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
biodb.DEBUG[2025-06-28 16:03:43.524][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-06-28 16:03:43.525][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-06-28 16:03:43.526][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-06-28 16:03:43.526][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-06-28 16:03:43.529][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:03:43.530][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:03:43.530][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:03:43.535][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:03:43.535][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:03:43.536][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:03:43.537][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-06-28 16:03:43.538][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67701".
fscache.INFO [2025-06-28 16:03:43.540][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
sched.DEBUG[2025-06-28 16:03:43.541][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-06-28 16:03:43.542][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-06-28 16:03:43.543][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67701".
sched.TRACE[2025-06-28 16:03:43.894][try_get_rcurl_content] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67701).
fscache.INFO [2025-06-28 16:03:44.240][private$cache$saveContents] Save 1 contents to /home/biocbuild/.cache/R/sched.
fscache.INFO [2025-06-28 16:03:44.242][private$cache$saveContents] Save 1 contents to /home/biocbuild/.cache/R/sched.
sched.DEBUG[2025-06-28 16:03:44.243][scheduler$sendRequest] Retrieved content saved to cache.
fscache.INFO [2025-06-28 16:03:44.244][cch$saveContents] Save 1 contents to /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
biodb.DEBUG[2025-06-28 16:03:44.245][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-06-28 16:03:44.247][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-06-28 16:03:44.248][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-06-28 16:03:44.249][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:03:44.250][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:03:44.251][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:03:44.255][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:03:44.256][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:03:44.257][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:03:44.258][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:03:44.260][ef$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:44.261][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:44.261][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:44.262][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:44.263][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:44.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:44.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:44.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:44.267][ef$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:03:44.268][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:03:44.269][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:44.270][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:44.271][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:03:44.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:03:44.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:44.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:44.287][ef$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:03:44.288][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:03:44.289][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:44.290][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:44.292][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:03:44.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:03:44.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:44.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:44.296][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:03:44.297][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:03:44.297][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:44.298][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:44.299][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:03:44.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:03:44.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:44.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:44.303][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:03:44.304][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:03:44.305][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:44.306][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:44.307][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:03:44.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:03:44.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:44.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:44.311][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:03:44.312][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:03:44.313][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:44.313][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:44.315][ef$get] Asked field names are: mass.
biodb.TRACE[2025-06-28 16:03:44.315][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:44.316][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:44.317][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:44.318][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-06-28 16:03:44.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:44.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:44.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:44.322][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:44.323][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:44.324][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:44.325][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:44.326][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:44.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:44.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:44.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:44.329][ef$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:03:44.330][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:03:44.331][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:44.332][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:44.333][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:03:44.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:03:44.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:44.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:44.337][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-06-28 16:03:44.338][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:03:44.339][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:44.340][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:44.341][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-06-28 16:03:44.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:03:44.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:44.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:44.344][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:03:44.345][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:03:44.346][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:44.347][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:44.348][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:03:44.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:03:44.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:44.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:44.352][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:44.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:44.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:44.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:44.355][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:44.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:44.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:44.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:44.359][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:44.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:44.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:44.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:44.363][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:44.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:44.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:44.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:44.366][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:44.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:44.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:44.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:44.370][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:44.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:44.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:44.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:44.373][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:44.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:44.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:44.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:44.377][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:44.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:44.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:44.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:44.389][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:44.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:44.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:44.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:44.393][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:44.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:44.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:44.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:03:44.398][self$createEntryFromContent] Accession numbers: 67701.
biodb.TRACE[2025-06-28 16:03:44.400][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:44.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:44.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:44.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:44.404][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:44.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:44.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:44.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:44.408][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:44.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:44.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:44.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:03:44.413][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:03:44.414][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:03:44.415][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:03:44.422][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:03:44.423][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:03:44.424][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:03:44.425][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-28 16:03:44.426][private$loadEntries] Creating entries from ids [1]: "67705".
biodb.DEBUG[2025-06-28 16:03:44.427][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-06-28 16:03:44.429][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
biodb.DEBUG[2025-06-28 16:03:44.430][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-06-28 16:03:44.431][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-06-28 16:03:44.433][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-06-28 16:03:44.434][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-06-28 16:03:44.437][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:03:44.438][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:03:44.439][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:03:44.444][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:03:44.445][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:03:44.446][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:03:44.447][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-06-28 16:03:44.448][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67705".
fscache.INFO [2025-06-28 16:03:44.451][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
sched.DEBUG[2025-06-28 16:03:44.452][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-06-28 16:03:44.453][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-06-28 16:03:44.454][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67705".
sched.TRACE[2025-06-28 16:03:44.807][try_get_rcurl_content] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67705).
fscache.INFO [2025-06-28 16:03:45.162][private$cache$saveContents] Save 1 contents to /home/biocbuild/.cache/R/sched.
fscache.INFO [2025-06-28 16:03:45.165][private$cache$saveContents] Save 1 contents to /home/biocbuild/.cache/R/sched.
sched.DEBUG[2025-06-28 16:03:45.166][scheduler$sendRequest] Retrieved content saved to cache.
fscache.INFO [2025-06-28 16:03:45.168][cch$saveContents] Save 1 contents to /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
biodb.DEBUG[2025-06-28 16:03:45.169][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-06-28 16:03:45.170][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-06-28 16:03:45.171][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-06-28 16:03:45.173][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:03:45.174][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:03:45.175][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:03:45.180][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:03:45.181][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:03:45.182][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:03:45.182][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:03:45.185][ef$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:45.186][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:45.187][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:45.188][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:45.190][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:45.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:45.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:45.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:45.194][ef$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:03:45.195][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:03:45.196][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:45.197][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:45.198][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:03:45.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:03:45.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:45.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:45.202][ef$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:03:45.203][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:03:45.204][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:45.205][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:45.207][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:03:45.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:03:45.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:45.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:45.211][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:03:45.212][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:03:45.213][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:45.214][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:45.215][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:03:45.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:03:45.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:45.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:45.219][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:03:45.220][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:03:45.221][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:45.222][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:45.223][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:03:45.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:03:45.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:45.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:45.227][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:03:45.228][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:03:45.229][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:45.230][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:45.232][ef$get] Asked field names are: mass.
biodb.TRACE[2025-06-28 16:03:45.233][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:45.234][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:45.235][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:45.236][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-06-28 16:03:45.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:45.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:45.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:45.240][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:45.241][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:45.242][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:45.243][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:45.244][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:45.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:45.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:45.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:45.248][ef$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:03:45.249][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:03:45.250][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:45.251][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:45.253][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:03:45.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:03:45.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:45.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:45.257][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-06-28 16:03:45.258][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:03:45.259][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:45.260][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:45.261][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-06-28 16:03:45.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:03:45.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:45.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:45.265][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:03:45.266][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:03:45.267][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:45.268][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:45.286][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:03:45.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:03:45.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:45.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:45.292][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:45.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:45.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:45.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:45.297][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:45.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:45.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:45.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:45.301][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:45.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:45.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:45.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:45.305][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:45.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:45.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:45.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:45.309][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:45.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:45.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:45.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:45.313][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:45.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:45.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:45.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:45.316][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:45.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:45.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:45.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:45.320][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:45.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:45.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:45.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:45.324][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:45.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:45.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:45.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:45.328][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:45.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:45.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:45.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:03:45.332][self$createEntryFromContent] Accession numbers: 67705.
biodb.TRACE[2025-06-28 16:03:45.333][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:45.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:45.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:45.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:45.336][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:45.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:45.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:45.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:45.340][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:45.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:45.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:45.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:03:45.344][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:03:45.345][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:03:45.346][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:03:45.350][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:03:45.351][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:03:45.352][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:03:45.353][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-28 16:03:45.354][private$loadEntries] Creating entries from ids [1]: "75265".
biodb.DEBUG[2025-06-28 16:03:45.355][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-06-28 16:03:45.356][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
biodb.DEBUG[2025-06-28 16:03:45.357][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-06-28 16:03:45.358][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-06-28 16:03:45.359][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-06-28 16:03:45.360][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-06-28 16:03:45.363][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:03:45.364][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:03:45.364][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:03:45.369][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:03:45.370][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:03:45.371][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:03:45.372][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-06-28 16:03:45.373][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=75265".
fscache.INFO [2025-06-28 16:03:45.375][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
sched.DEBUG[2025-06-28 16:03:45.376][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-06-28 16:03:45.377][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-06-28 16:03:45.378][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=75265".
sched.TRACE[2025-06-28 16:03:45.734][try_get_rcurl_content] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=75265).
fscache.INFO [2025-06-28 16:03:46.079][private$cache$saveContents] Save 1 contents to /home/biocbuild/.cache/R/sched.
fscache.INFO [2025-06-28 16:03:46.082][private$cache$saveContents] Save 1 contents to /home/biocbuild/.cache/R/sched.
sched.DEBUG[2025-06-28 16:03:46.083][scheduler$sendRequest] Retrieved content saved to cache.
fscache.INFO [2025-06-28 16:03:46.084][cch$saveContents] Save 1 contents to /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
biodb.DEBUG[2025-06-28 16:03:46.085][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-06-28 16:03:46.087][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-06-28 16:03:46.088][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-06-28 16:03:46.089][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:03:46.090][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:03:46.091][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:03:46.095][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:03:46.096][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:03:46.097][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:03:46.098][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:03:46.100][ef$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:46.101][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:46.102][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:46.102][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:46.104][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:46.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:46.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:46.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:46.107][ef$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:03:46.108][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:03:46.109][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:46.110][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:46.111][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:03:46.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:03:46.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:46.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:46.115][ef$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:03:46.116][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:03:46.117][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:46.118][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:46.119][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:03:46.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:03:46.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:46.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:46.123][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:03:46.124][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:03:46.124][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:46.125][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:46.126][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:03:46.127][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:03:46.128][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:46.129][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:46.130][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:03:46.131][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:03:46.132][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:46.133][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:46.134][ef$get] Asked field names are: mass.
biodb.TRACE[2025-06-28 16:03:46.135][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:46.136][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:46.137][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:46.138][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-06-28 16:03:46.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:46.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:46.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:46.142][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:46.143][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:46.144][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:46.144][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:46.145][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:46.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:46.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:46.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:46.149][ef$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:03:46.150][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:03:46.151][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:46.152][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:46.153][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:03:46.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:03:46.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:46.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:46.157][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-06-28 16:03:46.158][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:03:46.159][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:46.160][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:46.161][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-06-28 16:03:46.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:03:46.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:46.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:46.165][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:03:46.165][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:03:46.166][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:46.167][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:46.168][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:03:46.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:03:46.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:46.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:46.172][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:46.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:46.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:46.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:46.176][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:46.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:46.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:46.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:46.179][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:46.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:46.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:46.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:46.183][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:46.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:46.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:46.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:46.187][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:46.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:46.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:46.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:46.190][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:46.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:46.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:46.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:46.194][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:46.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:46.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:46.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:46.198][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:46.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:46.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:46.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:46.201][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:46.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:46.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:46.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:46.205][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:46.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:46.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:46.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:03:46.209][self$createEntryFromContent] Accession numbers: 75265.
biodb.TRACE[2025-06-28 16:03:46.210][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:46.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:46.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:46.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:46.213][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:46.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:46.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:46.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:46.217][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:46.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:46.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:46.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:03:46.221][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:03:46.221][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:03:46.222][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:03:46.227][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:03:46.227][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:03:46.228][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:03:46.229][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-28 16:03:46.230][private$loadEntries] Creating entries from ids [1]: "77370".
biodb.DEBUG[2025-06-28 16:03:46.231][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-06-28 16:03:46.232][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
biodb.DEBUG[2025-06-28 16:03:46.233][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-06-28 16:03:46.234][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-06-28 16:03:46.235][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-06-28 16:03:46.241][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-06-28 16:03:46.248][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:03:46.249][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:03:46.250][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:03:46.255][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:03:46.256][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:03:46.257][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:03:46.257][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-06-28 16:03:46.258][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=77370".
fscache.INFO [2025-06-28 16:03:46.260][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
sched.DEBUG[2025-06-28 16:03:46.261][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-06-28 16:03:46.262][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-06-28 16:03:46.263][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=77370".
sched.TRACE[2025-06-28 16:03:46.621][try_get_rcurl_content] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=77370).
fscache.INFO [2025-06-28 16:03:46.965][private$cache$saveContents] Save 1 contents to /home/biocbuild/.cache/R/sched.
fscache.INFO [2025-06-28 16:03:46.967][private$cache$saveContents] Save 1 contents to /home/biocbuild/.cache/R/sched.
sched.DEBUG[2025-06-28 16:03:46.968][scheduler$sendRequest] Retrieved content saved to cache.
fscache.INFO [2025-06-28 16:03:46.969][cch$saveContents] Save 1 contents to /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
biodb.DEBUG[2025-06-28 16:03:46.970][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-06-28 16:03:46.972][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-06-28 16:03:46.973][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-06-28 16:03:46.974][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:03:46.975][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:03:46.976][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:03:46.980][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:03:46.981][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:03:46.982][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:03:46.983][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:03:46.985][ef$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:46.986][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:46.987][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:46.988][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:46.989][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:46.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:46.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:46.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:46.992][ef$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:03:46.993][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:03:46.994][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:46.995][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:46.996][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:03:46.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:03:46.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:46.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:47.000][ef$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:03:47.001][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:03:47.002][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:47.003][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:47.004][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:03:47.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:03:47.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:47.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:47.007][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:03:47.008][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:03:47.009][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:47.010][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:47.011][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:03:47.012][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:03:47.013][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:47.014][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:47.015][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:03:47.016][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:03:47.017][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:47.018][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:47.019][ef$get] Asked field names are: mass.
biodb.TRACE[2025-06-28 16:03:47.020][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:47.020][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:47.021][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:47.022][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-06-28 16:03:47.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:47.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:47.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:47.026][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:47.027][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:47.028][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:47.029][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:47.030][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:47.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:47.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:47.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:47.034][ef$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:03:47.034][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:03:47.035][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:47.036][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:47.037][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:03:47.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:03:47.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:47.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:47.041][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-06-28 16:03:47.042][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:03:47.043][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:47.044][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:47.045][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-06-28 16:03:47.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:03:47.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:47.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:47.049][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:03:47.050][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:03:47.050][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:47.051][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:47.052][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:03:47.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:03:47.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:47.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:47.056][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:47.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:47.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:47.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:47.060][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:47.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:47.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:47.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:47.063][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:47.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:47.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:47.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:47.067][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:47.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:47.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:47.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:47.071][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:47.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:47.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:47.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:47.074][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:47.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:47.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:47.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:47.078][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:47.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:47.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:47.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:47.082][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:47.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:47.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:47.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:47.086][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:47.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:47.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:47.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:47.089][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:47.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:47.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:47.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:03:47.093][self$createEntryFromContent] Accession numbers: 77370.
biodb.TRACE[2025-06-28 16:03:47.094][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:47.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:47.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:47.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:47.098][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:47.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:47.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:47.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:47.101][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:47.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:47.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:47.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:03:47.105][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:03:47.106][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:03:47.106][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:03:47.111][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:03:47.112][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:03:47.112][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:03:47.113][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-28 16:03:47.114][private$loadEntries] Creating entries from ids [1]: "79074".
biodb.DEBUG[2025-06-28 16:03:47.115][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-06-28 16:03:47.117][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
biodb.DEBUG[2025-06-28 16:03:47.117][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-06-28 16:03:47.118][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-06-28 16:03:47.119][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-06-28 16:03:47.120][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-06-28 16:03:47.123][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:03:47.123][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:03:47.124][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:03:47.128][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:03:47.129][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:03:47.130][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:03:47.131][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-06-28 16:03:47.132][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=79074".
fscache.INFO [2025-06-28 16:03:47.134][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
sched.DEBUG[2025-06-28 16:03:47.135][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-06-28 16:03:47.136][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-06-28 16:03:47.137][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=79074".
sched.TRACE[2025-06-28 16:03:47.489][try_get_rcurl_content] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=79074).
fscache.INFO [2025-06-28 16:03:48.126][private$cache$saveContents] Save 1 contents to /home/biocbuild/.cache/R/sched.
fscache.INFO [2025-06-28 16:03:48.130][private$cache$saveContents] Save 1 contents to /home/biocbuild/.cache/R/sched.
sched.DEBUG[2025-06-28 16:03:48.133][scheduler$sendRequest] Retrieved content saved to cache.
fscache.INFO [2025-06-28 16:03:48.136][cch$saveContents] Save 1 contents to /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
biodb.DEBUG[2025-06-28 16:03:48.139][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-06-28 16:03:48.141][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-06-28 16:03:48.144][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-06-28 16:03:48.147][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:03:48.149][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:03:48.151][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:03:48.161][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:03:48.163][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:03:48.165][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:03:48.167][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:03:48.171][ef$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:48.173][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:48.175][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:48.177][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:48.179][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:48.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:48.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:48.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:48.185][ef$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:03:48.187][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:03:48.188][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:48.190][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:48.191][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:03:48.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:03:48.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:48.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:48.197][ef$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:03:48.198][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:03:48.199][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:48.200][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:48.202][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:03:48.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:03:48.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:48.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:48.206][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:03:48.208][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:03:48.209][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:48.210][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:48.211][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:03:48.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:03:48.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:48.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:48.227][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:03:48.228][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:03:48.229][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:48.230][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:48.232][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:03:48.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:03:48.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:48.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:48.236][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:03:48.237][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:03:48.238][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:48.239][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:48.240][ef$get] Asked field names are: mass.
biodb.TRACE[2025-06-28 16:03:48.241][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:48.242][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:48.243][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:48.244][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-06-28 16:03:48.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:48.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:48.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:48.248][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:48.249][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:48.249][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:48.250][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:48.251][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:48.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:48.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:48.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:48.255][ef$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:03:48.256][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:03:48.257][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:48.258][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:48.259][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:03:48.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:03:48.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:48.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:48.263][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-06-28 16:03:48.264][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:03:48.265][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:48.266][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:48.267][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-06-28 16:03:48.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:03:48.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:48.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:48.270][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:03:48.271][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:03:48.272][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:48.273][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:48.274][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:03:48.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:03:48.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:48.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:48.278][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:48.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:48.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:48.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:48.282][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:48.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:48.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:48.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:48.285][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:48.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:48.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:48.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:48.289][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:48.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:48.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:48.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:48.293][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:48.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:48.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:48.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:48.296][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:48.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:48.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:48.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:48.300][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:48.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:48.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:48.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:48.304][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:48.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:48.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:48.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:48.307][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:48.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:48.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:48.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:48.311][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:48.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:48.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:48.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:03:48.315][self$createEntryFromContent] Accession numbers: 79074.
biodb.TRACE[2025-06-28 16:03:48.316][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:48.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:48.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:48.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:48.319][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:48.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:48.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:48.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:48.323][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:48.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:48.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:48.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:03:48.327][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:03:48.328][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:03:48.329][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:03:48.333][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:03:48.334][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:03:48.335][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:03:48.336][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-28 16:03:48.337][private$loadEntries] Creating entries from ids [1]: "79302".
biodb.DEBUG[2025-06-28 16:03:48.338][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-06-28 16:03:48.339][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
biodb.DEBUG[2025-06-28 16:03:48.340][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-06-28 16:03:48.341][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-06-28 16:03:48.342][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-06-28 16:03:48.343][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-06-28 16:03:48.345][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:03:48.346][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:03:48.347][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:03:48.351][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:03:48.352][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:03:48.353][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:03:48.354][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-06-28 16:03:48.355][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=79302".
fscache.INFO [2025-06-28 16:03:48.357][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
sched.DEBUG[2025-06-28 16:03:48.358][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-06-28 16:03:48.359][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-06-28 16:03:48.360][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=79302".
sched.TRACE[2025-06-28 16:03:48.715][try_get_rcurl_content] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=79302).
fscache.INFO [2025-06-28 16:03:49.077][private$cache$saveContents] Save 1 contents to /home/biocbuild/.cache/R/sched.
fscache.INFO [2025-06-28 16:03:49.082][private$cache$saveContents] Save 1 contents to /home/biocbuild/.cache/R/sched.
sched.DEBUG[2025-06-28 16:03:49.085][scheduler$sendRequest] Retrieved content saved to cache.
fscache.INFO [2025-06-28 16:03:49.088][cch$saveContents] Save 1 contents to /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
biodb.DEBUG[2025-06-28 16:03:49.090][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-06-28 16:03:49.093][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-06-28 16:03:49.096][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-06-28 16:03:49.099][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:03:49.101][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:03:49.103][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:03:49.113][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:03:49.115][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:03:49.117][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:03:49.119][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:03:49.123][ef$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:49.125][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:49.126][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:49.128][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:49.130][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:49.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:49.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:49.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:49.135][ef$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:03:49.136][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:03:49.137][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:49.138][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:49.139][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:03:49.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:03:49.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:49.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:49.143][ef$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:03:49.144][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:03:49.145][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:49.146][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:49.147][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:03:49.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:03:49.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:49.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:49.151][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:03:49.152][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:03:49.153][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:49.154][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:49.155][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:03:49.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:03:49.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:49.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:49.159][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:03:49.160][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:03:49.161][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:49.162][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:49.163][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:03:49.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:03:49.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:49.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:49.167][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:03:49.168][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:03:49.169][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:49.170][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:49.171][ef$get] Asked field names are: mass.
biodb.TRACE[2025-06-28 16:03:49.172][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:49.173][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:49.174][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:49.175][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-06-28 16:03:49.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:49.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:49.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:49.179][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:49.180][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:49.180][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:49.181][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:49.182][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:49.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:49.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:49.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:49.186][ef$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:03:49.187][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:03:49.188][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:49.189][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:49.190][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:03:49.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:03:49.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:49.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:49.194][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-06-28 16:03:49.195][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:03:49.196][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:49.197][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:49.198][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-06-28 16:03:49.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:03:49.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:49.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:49.202][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:03:49.203][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:03:49.203][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:49.204][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:49.205][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:03:49.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:03:49.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:49.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:49.209][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:49.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:49.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:49.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:49.213][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:49.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:49.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:49.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:49.217][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:49.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:49.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:49.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:49.230][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:49.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:49.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:49.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:49.234][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:49.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:49.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:49.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:49.238][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:49.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:49.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:49.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:49.242][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:49.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:49.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:49.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:49.245][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:49.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:49.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:49.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:49.249][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:49.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:49.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:49.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:49.253][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:49.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:49.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:49.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:03:49.256][self$createEntryFromContent] Accession numbers: 79302.
biodb.TRACE[2025-06-28 16:03:49.257][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:49.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:49.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:49.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:49.261][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:49.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:49.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:49.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:49.265][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:49.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:49.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:49.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:03:49.268][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:03:49.269][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:03:49.270][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:03:49.274][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:03:49.275][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:03:49.276][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:03:49.277][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-28 16:03:49.278][private$loadEntries] Creating entries from ids [1]: "84164".
biodb.DEBUG[2025-06-28 16:03:49.279][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-06-28 16:03:49.280][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
biodb.DEBUG[2025-06-28 16:03:49.281][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-06-28 16:03:49.282][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-06-28 16:03:49.283][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-06-28 16:03:49.284][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-06-28 16:03:49.286][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:03:49.287][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:03:49.288][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:03:49.292][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:03:49.292][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:03:49.293][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:03:49.294][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-06-28 16:03:49.295][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=84164".
fscache.INFO [2025-06-28 16:03:49.297][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
sched.DEBUG[2025-06-28 16:03:49.298][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-06-28 16:03:49.299][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-06-28 16:03:49.300][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=84164".
sched.TRACE[2025-06-28 16:03:49.658][try_get_rcurl_content] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=84164).
fscache.INFO [2025-06-28 16:03:49.992][private$cache$saveContents] Save 1 contents to /home/biocbuild/.cache/R/sched.
fscache.INFO [2025-06-28 16:03:49.994][private$cache$saveContents] Save 1 contents to /home/biocbuild/.cache/R/sched.
sched.DEBUG[2025-06-28 16:03:49.995][scheduler$sendRequest] Retrieved content saved to cache.
fscache.INFO [2025-06-28 16:03:49.997][cch$saveContents] Save 1 contents to /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
biodb.DEBUG[2025-06-28 16:03:49.998][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-06-28 16:03:49.999][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-06-28 16:03:50.000][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-06-28 16:03:50.001][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:03:50.002][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:03:50.003][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:03:50.007][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:03:50.008][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:03:50.009][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:03:50.010][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:03:50.012][ef$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:50.013][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:50.014][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:50.015][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:50.016][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:50.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:50.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:50.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:50.020][ef$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:03:50.021][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:03:50.022][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:50.022][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:50.024][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:03:50.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:03:50.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:50.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:50.027][ef$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:03:50.028][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:03:50.029][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:50.030][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:50.031][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:03:50.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:03:50.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:50.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:50.035][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:03:50.036][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:03:50.037][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:50.038][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:50.039][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:03:50.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:03:50.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:50.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:50.042][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:03:50.043][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:03:50.044][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:50.045][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:50.046][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:03:50.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:03:50.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:50.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:50.050][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:03:50.051][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:03:50.052][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:50.053][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:50.054][ef$get] Asked field names are: mass.
biodb.TRACE[2025-06-28 16:03:50.055][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:50.056][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:50.056][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:50.057][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-06-28 16:03:50.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:50.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:50.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:50.061][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:50.062][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:50.063][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:50.064][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:50.065][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:50.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:50.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:50.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:50.069][ef$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:03:50.070][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:03:50.070][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:50.071][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:50.073][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:03:50.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:03:50.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:50.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:50.076][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-06-28 16:03:50.077][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:03:50.078][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:50.079][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:50.080][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-06-28 16:03:50.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:03:50.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:50.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:50.084][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:03:50.085][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:03:50.086][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:50.086][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:50.087][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:03:50.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:03:50.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:50.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:50.091][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:50.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:50.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:50.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:50.095][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:50.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:50.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:50.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:50.098][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:50.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:50.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:50.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:50.102][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:50.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:50.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:50.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:50.106][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:50.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:50.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:50.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:50.109][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:50.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:50.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:50.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:50.113][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:50.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:50.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:50.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:50.117][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:50.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:50.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:50.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:50.120][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:50.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:50.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:50.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:50.124][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:50.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:50.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:50.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:03:50.128][self$createEntryFromContent] Accession numbers: 84164.
biodb.TRACE[2025-06-28 16:03:50.129][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:50.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:50.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:50.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:50.132][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:50.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:50.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:50.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:50.136][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:50.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:50.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:50.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:03:50.139][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:03:50.140][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:03:50.141][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:03:50.145][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:03:50.146][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:03:50.147][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:03:50.148][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-28 16:03:50.149][private$loadEntries] Creating entries from ids [1]: "132314".
biodb.DEBUG[2025-06-28 16:03:50.150][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-06-28 16:03:50.151][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
biodb.DEBUG[2025-06-28 16:03:50.152][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-06-28 16:03:50.153][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-06-28 16:03:50.154][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-06-28 16:03:50.155][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-06-28 16:03:50.157][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:03:50.158][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:03:50.159][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:03:50.172][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:03:50.174][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:03:50.175][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:03:50.176][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-06-28 16:03:50.177][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=132314".
fscache.INFO [2025-06-28 16:03:50.179][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
sched.DEBUG[2025-06-28 16:03:50.180][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-06-28 16:03:50.181][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-06-28 16:03:50.182][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=132314".
sched.TRACE[2025-06-28 16:03:50.539][try_get_rcurl_content] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=132314).
fscache.INFO [2025-06-28 16:03:50.890][private$cache$saveContents] Save 1 contents to /home/biocbuild/.cache/R/sched.
fscache.INFO [2025-06-28 16:03:50.895][private$cache$saveContents] Save 1 contents to /home/biocbuild/.cache/R/sched.
sched.DEBUG[2025-06-28 16:03:50.897][scheduler$sendRequest] Retrieved content saved to cache.
fscache.INFO [2025-06-28 16:03:50.901][cch$saveContents] Save 1 contents to /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
biodb.DEBUG[2025-06-28 16:03:50.903][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-06-28 16:03:50.906][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-06-28 16:03:50.909][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-06-28 16:03:50.912][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:03:50.914][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:03:50.916][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:03:50.926][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:03:50.928][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:03:50.930][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:03:50.932][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:03:50.936][ef$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:50.938][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:50.940][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:50.942][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:50.944][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:50.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:50.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:50.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:50.950][ef$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:03:50.951][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:03:50.953][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:50.954][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:50.956][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:03:50.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:03:50.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:50.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:50.961][ef$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:03:50.962][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:03:50.963][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:50.964][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:50.966][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:03:50.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:03:50.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:50.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:50.970][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:03:50.971][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:03:50.972][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:50.973][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:50.975][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:03:50.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:03:50.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:50.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:50.979][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:03:50.980][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:03:50.980][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:50.981][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:50.983][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:03:50.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:03:50.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:50.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:50.986][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:03:50.987][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:03:50.988][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:50.989][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:50.990][ef$get] Asked field names are: mass.
biodb.TRACE[2025-06-28 16:03:50.991][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:50.992][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:50.993][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:50.994][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-06-28 16:03:50.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:50.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:50.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:50.998][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:50.999][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:51.000][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:51.000][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:51.002][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:51.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:51.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:51.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:51.005][ef$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:03:51.006][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:03:51.007][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:51.008][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:51.009][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:03:51.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:03:51.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:51.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:51.013][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-06-28 16:03:51.014][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:03:51.015][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:51.016][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:51.017][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-06-28 16:03:51.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:03:51.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:51.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:51.021][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:03:51.022][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:03:51.023][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:51.023][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:51.025][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:03:51.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:03:51.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:51.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:51.028][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:51.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:51.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:51.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:51.032][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:51.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:51.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:51.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:51.036][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:51.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:51.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:51.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:51.039][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:51.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:51.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:51.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:51.043][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:51.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:51.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:51.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:51.054][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:51.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:51.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:51.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:51.058][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:51.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:51.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:51.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:51.063][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:51.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:51.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:51.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:51.067][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:51.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:51.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:51.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:51.071][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:51.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:51.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:51.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:03:51.076][self$createEntryFromContent] Accession numbers: 132314.
biodb.TRACE[2025-06-28 16:03:51.077][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:51.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:51.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:51.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:51.081][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:51.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:51.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:51.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:51.086][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:51.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:51.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:51.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:03:51.090][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:03:51.091][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:03:51.092][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:03:51.099][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:03:51.100][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:03:51.101][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:03:51.102][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-28 16:03:51.103][private$loadEntries] Creating entries from ids [1]: "132338".
biodb.DEBUG[2025-06-28 16:03:51.104][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-06-28 16:03:51.106][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
biodb.DEBUG[2025-06-28 16:03:51.107][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-06-28 16:03:51.109][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-06-28 16:03:51.110][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-06-28 16:03:51.111][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-06-28 16:03:51.114][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:03:51.115][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:03:51.116][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:03:51.121][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:03:51.122][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:03:51.123][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:03:51.123][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-06-28 16:03:51.125][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=132338".
fscache.INFO [2025-06-28 16:03:51.127][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
sched.DEBUG[2025-06-28 16:03:51.128][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-06-28 16:03:51.129][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-06-28 16:03:51.131][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=132338".
sched.TRACE[2025-06-28 16:03:51.478][try_get_rcurl_content] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=132338).
fscache.INFO [2025-06-28 16:03:51.827][private$cache$saveContents] Save 1 contents to /home/biocbuild/.cache/R/sched.
fscache.INFO [2025-06-28 16:03:51.833][private$cache$saveContents] Save 1 contents to /home/biocbuild/.cache/R/sched.
sched.DEBUG[2025-06-28 16:03:51.836][scheduler$sendRequest] Retrieved content saved to cache.
fscache.INFO [2025-06-28 16:03:51.839][cch$saveContents] Save 1 contents to /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
biodb.DEBUG[2025-06-28 16:03:51.842][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-06-28 16:03:51.846][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-06-28 16:03:51.849][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-06-28 16:03:51.853][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:03:51.855][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:03:51.857][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:03:51.868][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:03:51.870][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:03:51.872][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:03:51.874][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:03:51.880][ef$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:51.882][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:51.884][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:51.886][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:51.888][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:51.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:51.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:51.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:51.894][ef$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:03:51.895][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:03:51.897][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:51.898][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:51.900][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:03:51.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:03:51.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:51.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:51.905][ef$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:03:51.906][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:03:51.907][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:51.908][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:51.910][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:03:51.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:03:51.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:51.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:51.914][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:03:51.916][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:03:51.917][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:51.918][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:51.919][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:03:51.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:03:51.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:51.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:51.946][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:03:51.948][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:03:51.949][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:51.950][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:51.951][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:03:51.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:03:51.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:51.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:51.956][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:03:51.957][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:03:51.958][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:51.959][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:51.960][ef$get] Asked field names are: mass.
biodb.TRACE[2025-06-28 16:03:51.961][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:51.962][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:51.963][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:51.964][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-06-28 16:03:51.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:51.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:51.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:51.968][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:51.969][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:51.970][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:51.971][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:51.972][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:51.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:51.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:51.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:51.976][ef$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:03:51.977][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:03:51.978][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:51.979][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:51.980][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:03:51.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:03:51.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:51.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:51.984][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-06-28 16:03:51.985][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:03:51.986][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:51.987][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:51.988][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-06-28 16:03:51.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:03:51.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:51.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:51.992][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:03:51.993][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:03:51.994][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:51.995][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:51.996][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:03:51.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:03:51.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:51.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:52.000][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:52.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:52.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:52.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:52.004][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:52.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:52.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:52.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:52.008][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:52.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:52.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:52.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:52.011][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:52.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:52.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:52.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:52.015][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:52.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:52.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:52.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:52.019][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:52.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:52.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:52.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:52.023][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:52.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:52.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:52.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:52.027][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:52.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:52.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:52.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:52.031][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:52.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:52.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:52.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:52.035][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:52.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:52.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:52.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:03:52.039][self$createEntryFromContent] Accession numbers: 132338.
biodb.TRACE[2025-06-28 16:03:52.040][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:52.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:52.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:52.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:52.044][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:52.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:52.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:52.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:52.048][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:52.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:52.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:52.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:03:52.052][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:03:52.053][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:03:52.054][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:03:52.058][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:03:52.059][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:03:52.060][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:03:52.061][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-28 16:03:52.062][private$loadEntries] Creating entries from ids [1]: "139019".
biodb.DEBUG[2025-06-28 16:03:52.063][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-06-28 16:03:52.064][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
biodb.DEBUG[2025-06-28 16:03:52.065][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-06-28 16:03:52.066][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-06-28 16:03:52.067][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-06-28 16:03:52.068][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-06-28 16:03:52.071][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:03:52.072][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:03:52.072][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:03:52.077][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:03:52.078][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:03:52.078][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:03:52.079][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-06-28 16:03:52.080][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=139019".
fscache.INFO [2025-06-28 16:03:52.082][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
sched.DEBUG[2025-06-28 16:03:52.083][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-06-28 16:03:52.084][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-06-28 16:03:52.086][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=139019".
sched.TRACE[2025-06-28 16:03:52.448][try_get_rcurl_content] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=139019).
fscache.INFO [2025-06-28 16:03:52.800][private$cache$saveContents] Save 1 contents to /home/biocbuild/.cache/R/sched.
fscache.INFO [2025-06-28 16:03:52.805][private$cache$saveContents] Save 1 contents to /home/biocbuild/.cache/R/sched.
sched.DEBUG[2025-06-28 16:03:52.808][scheduler$sendRequest] Retrieved content saved to cache.
fscache.INFO [2025-06-28 16:03:52.811][cch$saveContents] Save 1 contents to /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
biodb.DEBUG[2025-06-28 16:03:52.813][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-06-28 16:03:52.816][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-06-28 16:03:52.818][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-06-28 16:03:52.822][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:03:52.824][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:03:52.826][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:03:52.836][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:03:52.837][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:03:52.839][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:03:52.841][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:03:52.845][ef$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:52.847][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:52.848][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:52.850][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:52.852][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:52.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:52.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:52.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:52.858][ef$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:03:52.859][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:03:52.861][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:52.862][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:52.864][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:03:52.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:03:52.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:52.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:52.869][ef$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:03:52.870][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:03:52.871][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:52.872][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:52.873][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:03:52.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:03:52.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:52.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:52.878][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:03:52.879][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:03:52.880][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:52.881][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:52.882][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:03:52.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:03:52.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:52.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:52.886][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:03:52.887][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:03:52.888][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:52.889][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:52.890][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:03:52.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:03:52.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:52.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:52.894][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:03:52.895][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:03:52.896][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:52.896][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:52.898][ef$get] Asked field names are: mass.
biodb.TRACE[2025-06-28 16:03:52.899][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:52.899][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:52.900][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:52.901][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-06-28 16:03:52.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:52.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:52.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:52.905][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:52.906][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:52.907][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:52.908][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:52.909][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:52.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:52.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:52.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:52.913][ef$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:03:52.914][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:03:52.915][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:52.915][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:52.917][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:03:52.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:03:52.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:52.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:52.920][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-06-28 16:03:52.921][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:03:52.922][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:52.923][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:52.924][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-06-28 16:03:52.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:03:52.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:52.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:52.928][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:03:52.929][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:03:52.930][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:52.931][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:52.932][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:03:52.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:03:52.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:52.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:52.935][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:52.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:52.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:52.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:52.939][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:52.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:52.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:52.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:52.952][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:52.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:52.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:52.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:52.957][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:52.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:52.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:52.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:52.961][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:52.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:52.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:52.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:52.965][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:52.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:52.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:52.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:52.969][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:52.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:52.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:52.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:52.972][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:52.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:52.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:52.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:52.976][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:52.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:52.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:52.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:52.980][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:52.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:52.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:52.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:03:52.983][self$createEntryFromContent] Accession numbers: 139019.
biodb.TRACE[2025-06-28 16:03:52.984][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:52.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:52.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:52.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:52.988][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:52.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:52.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:52.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:52.992][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:52.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:52.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:52.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:03:52.995][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:03:52.996][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:03:52.997][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:03:53.001][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:03:53.002][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:03:53.003][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:03:53.004][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-28 16:03:53.005][private$loadEntries] Creating entries from ids [1]: "139367".
biodb.DEBUG[2025-06-28 16:03:53.006][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-06-28 16:03:53.007][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
biodb.DEBUG[2025-06-28 16:03:53.008][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-06-28 16:03:53.009][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-06-28 16:03:53.010][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-06-28 16:03:53.011][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-06-28 16:03:53.013][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:03:53.014][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:03:53.015][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:03:53.019][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:03:53.020][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:03:53.021][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:03:53.022][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-06-28 16:03:53.023][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=139367".
fscache.INFO [2025-06-28 16:03:53.024][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
sched.DEBUG[2025-06-28 16:03:53.025][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-06-28 16:03:53.026][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-06-28 16:03:53.028][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=139367".
sched.TRACE[2025-06-28 16:03:53.382][try_get_rcurl_content] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=139367).
fscache.INFO [2025-06-28 16:03:53.728][private$cache$saveContents] Save 1 contents to /home/biocbuild/.cache/R/sched.
fscache.INFO [2025-06-28 16:03:53.733][private$cache$saveContents] Save 1 contents to /home/biocbuild/.cache/R/sched.
sched.DEBUG[2025-06-28 16:03:53.736][scheduler$sendRequest] Retrieved content saved to cache.
fscache.INFO [2025-06-28 16:03:53.739][cch$saveContents] Save 1 contents to /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
biodb.DEBUG[2025-06-28 16:03:53.741][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-06-28 16:03:53.744][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-06-28 16:03:53.747][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-06-28 16:03:53.750][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:03:53.752][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:03:53.754][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:03:53.763][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:03:53.766][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:03:53.768][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:03:53.770][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:03:53.774][ef$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:53.776][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:53.778][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:53.779][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:53.781][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:53.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:53.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:53.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:53.788][ef$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:03:53.790][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:03:53.791][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:53.793][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:53.794][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:03:53.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:03:53.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:53.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:53.800][ef$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:03:53.801][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:03:53.802][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:53.803][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:53.805][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:03:53.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:03:53.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:53.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:53.809][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:03:53.810][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:03:53.811][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:53.812][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:53.814][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:03:53.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:03:53.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:53.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:53.818][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:03:53.819][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:03:53.820][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:53.821][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:53.822][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:03:53.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:03:53.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:53.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:53.825][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:03:53.826][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:03:53.827][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:53.828][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:53.829][ef$get] Asked field names are: mass.
biodb.TRACE[2025-06-28 16:03:53.830][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:53.831][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:53.832][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:53.833][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-06-28 16:03:53.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:53.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:53.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:53.837][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:53.838][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:53.839][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:53.839][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:53.841][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:53.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:53.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:53.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:53.844][ef$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:03:53.845][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:03:53.846][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:53.847][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:53.848][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:03:53.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:03:53.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:53.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:53.852][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-06-28 16:03:53.853][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:03:53.854][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:53.855][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:53.856][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-06-28 16:03:53.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:03:53.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:53.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:53.859][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:03:53.860][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:03:53.861][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:53.862][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:53.863][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:03:53.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:03:53.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:53.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:53.867][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:53.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:53.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:53.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:53.870][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:53.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:53.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:53.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:53.874][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:53.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:53.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:53.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:53.878][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:53.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:53.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:53.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:53.881][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:53.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:53.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:53.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:53.885][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:53.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:53.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:53.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:53.889][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:53.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:53.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:53.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:53.892][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:53.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:53.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:53.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:53.896][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:53.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:53.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:53.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:53.899][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:53.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:53.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:53.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:03:53.903][self$createEntryFromContent] Accession numbers: 139367.
biodb.TRACE[2025-06-28 16:03:53.904][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:53.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:53.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:53.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:53.908][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:53.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:53.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:53.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:53.911][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:53.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:53.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:53.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:03:53.915][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:03:53.916][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:03:53.917][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:03:53.921][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:03:53.922][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:03:53.923][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:03:53.924][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-28 16:03:53.925][private$loadEntries] Creating entries from ids [1]: "145029".
biodb.DEBUG[2025-06-28 16:03:53.925][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-06-28 16:03:53.927][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
biodb.DEBUG[2025-06-28 16:03:53.928][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-06-28 16:03:53.929][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-06-28 16:03:53.930][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-06-28 16:03:53.931][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-06-28 16:03:53.942][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:03:53.943][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:03:53.944][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:03:53.949][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:03:53.950][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:03:53.951][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:03:53.951][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-06-28 16:03:53.953][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=145029".
fscache.INFO [2025-06-28 16:03:53.954][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
sched.DEBUG[2025-06-28 16:03:53.955][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-06-28 16:03:53.956][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-06-28 16:03:53.958][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=145029".
sched.TRACE[2025-06-28 16:03:54.325][try_get_rcurl_content] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=145029).
fscache.INFO [2025-06-28 16:03:54.747][private$cache$saveContents] Save 1 contents to /home/biocbuild/.cache/R/sched.
fscache.INFO [2025-06-28 16:03:54.752][private$cache$saveContents] Save 1 contents to /home/biocbuild/.cache/R/sched.
sched.DEBUG[2025-06-28 16:03:54.754][scheduler$sendRequest] Retrieved content saved to cache.
fscache.INFO [2025-06-28 16:03:54.758][cch$saveContents] Save 1 contents to /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
biodb.DEBUG[2025-06-28 16:03:54.760][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-06-28 16:03:54.763][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-06-28 16:03:54.766][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-06-28 16:03:54.769][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:03:54.771][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:03:54.773][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:03:54.783][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:03:54.785][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:03:54.787][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:03:54.789][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:03:54.794][ef$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:54.796][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:54.797][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:54.799][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:54.801][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:54.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:54.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:54.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:54.807][ef$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:03:54.809][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:03:54.810][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:54.811][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:54.813][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:03:54.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:03:54.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:54.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:54.818][ef$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:03:54.820][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:03:54.821][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:54.822][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:54.823][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:03:54.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:03:54.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:54.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:54.828][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:03:54.829][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:03:54.830][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:54.831][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:54.832][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:03:54.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:03:54.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:54.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:54.836][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:03:54.837][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:03:54.838][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:54.839][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:54.840][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:03:54.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:03:54.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:54.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:54.844][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:03:54.845][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:03:54.846][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:54.846][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:54.848][ef$get] Asked field names are: mass.
biodb.TRACE[2025-06-28 16:03:54.849][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:54.849][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:54.850][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:54.851][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-06-28 16:03:54.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:54.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:54.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:54.855][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:54.856][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:54.857][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:54.858][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:54.859][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:54.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:54.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:54.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:54.863][ef$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:03:54.864][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:03:54.864][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:54.865][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:54.867][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:03:54.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:03:54.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:54.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:54.870][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-06-28 16:03:54.871][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:03:54.872][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:54.873][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:54.874][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-06-28 16:03:54.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:03:54.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:54.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:54.878][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:03:54.879][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:03:54.880][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:54.881][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:54.882][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:03:54.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:03:54.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:54.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:54.886][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:54.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:54.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:54.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:54.889][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:54.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:54.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:54.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:54.893][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:54.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:54.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:54.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:54.897][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:54.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:54.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:54.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:54.901][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:54.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:54.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:54.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:54.904][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:54.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:54.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:54.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:54.908][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:54.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:54.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:54.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:54.912][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:54.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:54.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:54.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:54.915][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:54.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:54.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:54.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:54.919][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:54.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:54.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:54.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:03:54.923][self$createEntryFromContent] Accession numbers: 145029.
biodb.TRACE[2025-06-28 16:03:54.924][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:54.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:54.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:54.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:54.928][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:54.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:54.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:54.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:54.931][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:54.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:54.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:54.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:03:54.935][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:03:54.936][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:03:54.936][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:03:54.941][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:03:54.942][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:03:54.942][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:03:54.943][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-28 16:03:54.944][private$loadEntries] Creating entries from ids [1]: "173077".
biodb.DEBUG[2025-06-28 16:03:54.945][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-06-28 16:03:54.947][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
biodb.DEBUG[2025-06-28 16:03:54.948][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-06-28 16:03:54.949][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-06-28 16:03:54.950][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-06-28 16:03:54.950][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-06-28 16:03:54.953][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:03:54.954][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:03:54.954][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:03:54.959][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:03:54.959][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:03:54.960][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:03:54.961][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-06-28 16:03:54.962][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=173077".
fscache.INFO [2025-06-28 16:03:54.964][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
sched.DEBUG[2025-06-28 16:03:54.965][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-06-28 16:03:54.966][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-06-28 16:03:54.967][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=173077".
sched.TRACE[2025-06-28 16:03:55.333][try_get_rcurl_content] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=173077).
fscache.INFO [2025-06-28 16:03:55.827][private$cache$saveContents] Save 1 contents to /home/biocbuild/.cache/R/sched.
fscache.INFO [2025-06-28 16:03:55.830][private$cache$saveContents] Save 1 contents to /home/biocbuild/.cache/R/sched.
sched.DEBUG[2025-06-28 16:03:55.831][scheduler$sendRequest] Retrieved content saved to cache.
fscache.INFO [2025-06-28 16:03:55.832][cch$saveContents] Save 1 contents to /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
biodb.DEBUG[2025-06-28 16:03:55.833][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-06-28 16:03:55.834][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-06-28 16:03:55.835][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-06-28 16:03:55.837][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:03:55.838][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:03:55.838][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:03:55.843][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:03:55.843][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:03:55.844][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:03:55.846][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:03:55.850][ef$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:55.852][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:55.853][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:55.855][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:55.857][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:55.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:55.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:55.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:55.862][ef$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:03:55.864][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:03:55.865][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:55.866][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:55.868][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:03:55.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:03:55.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:55.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:55.873][ef$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:03:55.874][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:03:55.875][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:55.876][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:55.877][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:03:55.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:03:55.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:55.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:55.894][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:03:55.895][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:03:55.896][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:55.897][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:55.899][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:03:55.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:03:55.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:55.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:55.902][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:03:55.903][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:03:55.904][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:55.905][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:55.906][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:03:55.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:03:55.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:55.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:55.910][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:03:55.911][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:03:55.912][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:55.913][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:55.914][ef$get] Asked field names are: mass.
biodb.TRACE[2025-06-28 16:03:55.915][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:55.916][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:55.917][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:55.918][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-06-28 16:03:55.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:55.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:55.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:55.922][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:55.923][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:55.923][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:55.924][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:55.925][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:55.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:55.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:55.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:55.929][ef$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:03:55.930][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:03:55.931][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:55.932][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:55.933][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:03:55.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:03:55.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:55.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:55.937][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-06-28 16:03:55.938][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:03:55.939][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:55.939][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:55.941][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-06-28 16:03:55.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:03:55.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:55.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:55.944][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:03:55.945][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:03:55.946][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:55.947][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:55.948][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:03:55.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:03:55.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:55.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:55.952][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:55.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:55.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:55.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:55.955][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:55.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:55.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:55.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:55.959][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:55.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:55.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:55.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:55.963][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:55.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:55.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:55.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:55.966][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:55.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:55.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:55.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:55.970][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:55.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:55.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:55.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:55.974][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:55.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:55.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:55.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:55.977][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:55.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:55.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:55.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:55.981][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:55.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:55.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:55.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:55.985][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:55.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:55.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:55.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:03:55.988][self$createEntryFromContent] Accession numbers: 173077.
biodb.TRACE[2025-06-28 16:03:55.989][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:55.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:55.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:55.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:55.993][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:55.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:55.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:55.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:55.997][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:55.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:55.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:55.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:03:56.000][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:03:56.001][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:03:56.002][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:03:56.006][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:03:56.007][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:03:56.008][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:03:56.009][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-28 16:03:56.010][private$loadEntries] Creating entries from ids [1]: "365445".
biodb.DEBUG[2025-06-28 16:03:56.011][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-06-28 16:03:56.012][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
biodb.DEBUG[2025-06-28 16:03:56.013][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-06-28 16:03:56.014][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-06-28 16:03:56.015][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-06-28 16:03:56.016][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-06-28 16:03:56.018][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:03:56.019][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:03:56.020][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:03:56.024][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:03:56.025][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:03:56.026][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:03:56.026][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-06-28 16:03:56.027][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=365445".
fscache.INFO [2025-06-28 16:03:56.029][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
sched.DEBUG[2025-06-28 16:03:56.030][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-06-28 16:03:56.031][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-06-28 16:03:56.032][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=365445".
sched.TRACE[2025-06-28 16:03:56.437][try_get_rcurl_content] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=365445).
fscache.INFO [2025-06-28 16:03:56.779][private$cache$saveContents] Save 1 contents to /home/biocbuild/.cache/R/sched.
fscache.INFO [2025-06-28 16:03:56.781][private$cache$saveContents] Save 1 contents to /home/biocbuild/.cache/R/sched.
sched.DEBUG[2025-06-28 16:03:56.782][scheduler$sendRequest] Retrieved content saved to cache.
fscache.INFO [2025-06-28 16:03:56.784][cch$saveContents] Save 1 contents to /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
biodb.DEBUG[2025-06-28 16:03:56.785][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-06-28 16:03:56.786][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-06-28 16:03:56.787][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-06-28 16:03:56.788][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:03:56.789][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:03:56.790][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:03:56.794][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:03:56.795][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:03:56.796][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:03:56.797][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:03:56.799][ef$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:56.800][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:56.801][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:56.802][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:56.803][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:56.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:56.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:56.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:56.807][ef$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:03:56.807][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:03:56.808][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:56.809][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:56.810][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:03:56.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:03:56.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:56.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:56.814][ef$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:03:56.815][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:03:56.816][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:56.817][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:56.818][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:03:56.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:03:56.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:56.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:56.822][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:03:56.823][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:03:56.823][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:56.824][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:56.825][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:03:56.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:03:56.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:56.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:56.829][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:03:56.830][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:03:56.831][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:56.832][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:56.833][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:03:56.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:03:56.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:56.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:56.836][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:03:56.837][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:03:56.838][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:56.839][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:56.840][ef$get] Asked field names are: mass.
biodb.TRACE[2025-06-28 16:03:56.841][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:56.842][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:56.843][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:56.844][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-06-28 16:03:56.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:56.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:56.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:56.848][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:56.849][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:56.850][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:56.850][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:56.852][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:56.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:56.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:56.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:56.855][ef$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:03:56.856][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:03:56.857][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:56.858][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:56.859][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:03:56.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:03:56.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:56.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:56.863][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-06-28 16:03:56.864][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:03:56.865][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:56.865][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:56.867][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-06-28 16:03:56.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:03:56.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:56.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:56.870][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:03:56.871][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:03:56.872][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:56.873][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:56.874][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:03:56.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:03:56.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:56.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:56.878][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:56.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:56.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:56.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:56.891][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:56.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:56.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:56.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:56.896][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:56.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:56.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:56.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:56.900][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:56.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:56.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:56.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:56.903][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:56.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:56.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:56.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:56.907][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:56.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:56.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:56.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:56.911][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:56.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:56.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:56.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:56.914][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:56.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:56.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:56.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:56.918][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:56.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:56.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:56.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:56.921][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:56.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:56.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:56.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:03:56.925][self$createEntryFromContent] Accession numbers: 365445.
biodb.TRACE[2025-06-28 16:03:56.926][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:56.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:56.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:56.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:56.930][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:56.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:56.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:56.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:56.933][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:56.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:56.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:56.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:03:56.937][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:03:56.938][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:03:56.938][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:03:56.942][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:03:56.943][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:03:56.944][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:03:56.945][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-28 16:03:56.946][private$loadEntries] Creating entries from ids [1]: "32151".
biodb.DEBUG[2025-06-28 16:03:56.947][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-06-28 16:03:56.948][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
biodb.DEBUG[2025-06-28 16:03:56.949][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-06-28 16:03:56.950][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-06-28 16:03:56.951][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-06-28 16:03:56.952][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-06-28 16:03:56.954][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:03:56.955][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:03:56.956][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:03:56.960][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:03:56.961][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:03:56.961][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:03:56.962][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-06-28 16:03:56.963][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=32151".
fscache.INFO [2025-06-28 16:03:56.965][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
sched.DEBUG[2025-06-28 16:03:56.966][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-06-28 16:03:56.967][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-06-28 16:03:56.968][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=32151".
sched.TRACE[2025-06-28 16:03:57.319][try_get_rcurl_content] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=32151).
fscache.INFO [2025-06-28 16:03:57.660][private$cache$saveContents] Save 1 contents to /home/biocbuild/.cache/R/sched.
fscache.INFO [2025-06-28 16:03:57.665][private$cache$saveContents] Save 1 contents to /home/biocbuild/.cache/R/sched.
sched.DEBUG[2025-06-28 16:03:57.668][scheduler$sendRequest] Retrieved content saved to cache.
fscache.INFO [2025-06-28 16:03:57.671][cch$saveContents] Save 1 contents to /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
biodb.DEBUG[2025-06-28 16:03:57.673][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-06-28 16:03:57.676][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-06-28 16:03:57.678][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-06-28 16:03:57.682][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:03:57.684][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:03:57.686][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:03:57.695][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:03:57.697][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:03:57.699][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:03:57.701][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:03:57.705][ef$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:57.707][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:57.709][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:57.711][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:57.713][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:57.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:57.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:57.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:57.719][ef$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:03:57.720][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:03:57.722][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:57.723][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:57.725][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:03:57.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:03:57.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:57.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:57.730][ef$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:03:57.731][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:03:57.732][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:57.734][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:57.735][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:03:57.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:03:57.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:57.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:57.740][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:03:57.741][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:03:57.742][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:57.743][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:57.744][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:03:57.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:03:57.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:57.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:57.748][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:03:57.749][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:03:57.750][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:57.751][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:57.752][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:03:57.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:03:57.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:57.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:57.756][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:03:57.757][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:03:57.758][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:57.759][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:57.760][ef$get] Asked field names are: mass.
biodb.TRACE[2025-06-28 16:03:57.761][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:57.761][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:57.762][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:57.763][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-06-28 16:03:57.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:57.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:57.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:57.767][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:57.768][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:57.769][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:57.770][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:57.771][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:57.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:57.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:57.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:57.775][ef$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:03:57.776][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:03:57.776][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:57.777][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:57.778][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:03:57.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:03:57.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:57.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:57.782][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-06-28 16:03:57.783][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:03:57.784][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:57.785][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:57.786][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-06-28 16:03:57.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:03:57.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:57.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:57.790][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:03:57.791][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:03:57.791][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:57.792][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:57.793][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:03:57.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:03:57.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:57.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:57.797][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:57.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:57.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:57.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:57.801][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:57.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:57.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:57.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:57.804][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:57.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:57.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:57.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:57.808][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:57.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:57.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:57.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:57.812][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:57.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:57.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:57.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:57.815][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:57.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:57.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:57.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:57.819][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:57.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:57.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:57.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:57.823][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:57.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:57.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:57.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:57.826][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:57.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:57.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:57.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:57.830][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:57.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:57.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:57.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:03:57.833][self$createEntryFromContent] Accession numbers: 32151.
biodb.TRACE[2025-06-28 16:03:57.834][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:57.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:57.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:57.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:57.838][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:57.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:57.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:57.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:57.842][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:57.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:57.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:57.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:03:57.845][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:03:57.846][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:03:57.847][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:03:57.851][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:03:57.852][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:03:57.853][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:03:57.854][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-28 16:03:57.859][private$loadEntries] Creating entries from ids [1]: "67676".
biodb.DEBUG[2025-06-28 16:03:57.864][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-06-28 16:03:57.866][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
biodb.DEBUG[2025-06-28 16:03:57.867][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-06-28 16:03:57.868][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-06-28 16:03:57.870][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-06-28 16:03:57.870][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-06-28 16:03:57.873][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:03:57.874][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:03:57.875][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:03:57.879][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:03:57.880][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:03:57.880][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:03:57.881][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-06-28 16:03:57.882][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67676".
fscache.INFO [2025-06-28 16:03:57.884][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
sched.DEBUG[2025-06-28 16:03:57.885][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-06-28 16:03:57.886][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-06-28 16:03:57.887][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67676".
sched.TRACE[2025-06-28 16:03:58.242][try_get_rcurl_content] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=67676).
fscache.INFO [2025-06-28 16:03:58.593][private$cache$saveContents] Save 1 contents to /home/biocbuild/.cache/R/sched.
fscache.INFO [2025-06-28 16:03:58.598][private$cache$saveContents] Save 1 contents to /home/biocbuild/.cache/R/sched.
sched.DEBUG[2025-06-28 16:03:58.600][scheduler$sendRequest] Retrieved content saved to cache.
fscache.INFO [2025-06-28 16:03:58.603][cch$saveContents] Save 1 contents to /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
biodb.DEBUG[2025-06-28 16:03:58.606][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-06-28 16:03:58.608][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-06-28 16:03:58.611][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-06-28 16:03:58.614][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:03:58.616][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:03:58.618][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:03:58.628][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:03:58.630][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:03:58.632][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:03:58.633][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:03:58.637][ef$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:58.639][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:58.641][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:58.642][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:58.644][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:58.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:58.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:58.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:58.650][ef$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:03:58.652][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:03:58.653][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:58.654][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:58.656][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:03:58.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:03:58.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:58.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:58.661][ef$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:03:58.662][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:03:58.663][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:58.664][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:58.666][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:03:58.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:03:58.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:58.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:58.670][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:03:58.671][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:03:58.672][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:58.673][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:58.674][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:03:58.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:03:58.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:58.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:58.678][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:03:58.679][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:03:58.680][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:58.681][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:58.682][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:03:58.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:03:58.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:58.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:58.686][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:03:58.687][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:03:58.687][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:58.688][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:58.689][ef$get] Asked field names are: mass.
biodb.TRACE[2025-06-28 16:03:58.690][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:58.691][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:58.692][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:58.693][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-06-28 16:03:58.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:58.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:58.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:58.697][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:58.698][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:58.699][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:58.700][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:58.701][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:58.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:58.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:58.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:58.704][ef$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:03:58.705][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:03:58.706][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:58.707][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:58.708][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:03:58.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:03:58.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:58.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:58.712][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-06-28 16:03:58.713][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:03:58.714][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:58.715][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:58.716][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-06-28 16:03:58.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:03:58.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:58.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:58.719][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:03:58.720][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:03:58.721][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:58.722][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:58.723][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:03:58.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:03:58.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:58.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:58.727][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:58.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:58.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:58.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:58.731][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:58.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:58.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:58.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:58.734][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:58.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:58.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:58.737][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:58.738][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:58.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:58.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:58.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:58.742][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:58.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:58.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:58.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:58.745][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:58.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:58.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:58.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:58.749][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:58.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:58.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:58.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:58.753][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:58.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:58.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:58.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:58.756][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:58.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:58.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:58.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:58.760][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:58.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:58.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:58.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:03:58.763][self$createEntryFromContent] Accession numbers: 67676.
biodb.TRACE[2025-06-28 16:03:58.764][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:58.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:58.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:58.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:58.768][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:58.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:58.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:58.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:58.772][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:58.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:58.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:58.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:03:58.775][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:03:58.776][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:03:58.777][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:03:58.781][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:03:58.782][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:03:58.783][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:03:58.784][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-28 16:03:58.785][private$loadEntries] Creating entries from ids [1]: "69690".
biodb.DEBUG[2025-06-28 16:03:58.786][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-06-28 16:03:58.787][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
biodb.DEBUG[2025-06-28 16:03:58.788][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-06-28 16:03:58.789][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-06-28 16:03:58.790][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-06-28 16:03:58.791][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-06-28 16:03:58.793][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:03:58.794][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:03:58.795][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:03:58.799][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:03:58.799][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:03:58.800][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:03:58.801][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-06-28 16:03:58.802][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=69690".
fscache.INFO [2025-06-28 16:03:58.804][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
sched.DEBUG[2025-06-28 16:03:58.805][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-06-28 16:03:58.806][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-06-28 16:03:58.807][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=69690".
sched.TRACE[2025-06-28 16:03:59.174][try_get_rcurl_content] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=69690).
fscache.INFO [2025-06-28 16:03:59.523][private$cache$saveContents] Save 1 contents to /home/biocbuild/.cache/R/sched.
fscache.INFO [2025-06-28 16:03:59.528][private$cache$saveContents] Save 1 contents to /home/biocbuild/.cache/R/sched.
sched.DEBUG[2025-06-28 16:03:59.530][scheduler$sendRequest] Retrieved content saved to cache.
fscache.INFO [2025-06-28 16:03:59.534][cch$saveContents] Save 1 contents to /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
biodb.DEBUG[2025-06-28 16:03:59.536][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-06-28 16:03:59.539][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-06-28 16:03:59.541][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-06-28 16:03:59.545][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:03:59.547][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:03:59.549][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:03:59.558][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:03:59.560][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:03:59.562][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:03:59.564][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:03:59.568][ef$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:59.570][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:59.571][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:59.573][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:59.575][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:59.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:59.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:59.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:59.581][ef$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:03:59.583][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:03:59.584][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:59.585][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:59.587][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:03:59.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:03:59.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:59.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:59.605][ef$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:03:59.607][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:03:59.608][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:59.609][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:59.610][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:03:59.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:03:59.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:59.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:59.614][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:03:59.615][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:03:59.616][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:59.617][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:59.618][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:03:59.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:03:59.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:59.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:59.622][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:03:59.623][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:03:59.624][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:59.625][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:59.626][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:03:59.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:03:59.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:59.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:59.629][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:03:59.630][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:03:59.631][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:59.632][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:59.633][ef$get] Asked field names are: mass.
biodb.TRACE[2025-06-28 16:03:59.634][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:59.635][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:59.636][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:59.637][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-06-28 16:03:59.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:03:59.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:59.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:59.640][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:59.641][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:59.642][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:59.643][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:59.644][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:59.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:59.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:59.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:59.648][ef$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:03:59.649][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:03:59.650][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:59.650][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:59.652][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:03:59.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:03:59.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:59.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:59.655][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-06-28 16:03:59.656][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:03:59.657][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:59.658][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:59.659][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-06-28 16:03:59.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:03:59.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:59.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:59.663][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:03:59.664][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:03:59.664][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:59.665][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:59.666][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:03:59.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:03:59.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:59.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:59.670][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:59.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:59.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:59.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:59.674][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:59.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:59.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:59.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:59.677][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:59.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:59.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:59.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:59.681][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:03:59.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:03:59.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:59.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:59.685][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:59.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:59.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:59.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:59.688][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:59.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:59.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:59.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:59.692][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:59.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:59.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:59.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:59.695][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:59.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:59.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:59.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:59.699][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:59.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:59.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:59.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:59.703][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:03:59.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:03:59.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:59.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:03:59.706][self$createEntryFromContent] Accession numbers: 69690.
biodb.TRACE[2025-06-28 16:03:59.707][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:59.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:59.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:59.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:59.711][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:59.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:59.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:59.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:03:59.715][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:59.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:03:59.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:03:59.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:03:59.718][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:03:59.719][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:03:59.720][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:03:59.724][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:03:59.725][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:03:59.726][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:03:59.727][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-28 16:03:59.728][private$loadEntries] Creating entries from ids [1]: "69734".
biodb.DEBUG[2025-06-28 16:03:59.729][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-06-28 16:03:59.730][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
biodb.DEBUG[2025-06-28 16:03:59.731][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-06-28 16:03:59.732][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-06-28 16:03:59.733][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-06-28 16:03:59.734][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-06-28 16:03:59.736][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:03:59.737][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:03:59.738][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:03:59.742][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:03:59.743][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:03:59.744][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:03:59.744][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-06-28 16:03:59.745][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=69734".
fscache.INFO [2025-06-28 16:03:59.747][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
sched.DEBUG[2025-06-28 16:03:59.748][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-06-28 16:03:59.749][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-06-28 16:03:59.750][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=69734".
sched.TRACE[2025-06-28 16:04:00.112][try_get_rcurl_content] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=69734).
fscache.INFO [2025-06-28 16:04:00.458][private$cache$saveContents] Save 1 contents to /home/biocbuild/.cache/R/sched.
fscache.INFO [2025-06-28 16:04:00.461][private$cache$saveContents] Save 1 contents to /home/biocbuild/.cache/R/sched.
sched.DEBUG[2025-06-28 16:04:00.462][scheduler$sendRequest] Retrieved content saved to cache.
fscache.INFO [2025-06-28 16:04:00.463][cch$saveContents] Save 1 contents to /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
biodb.DEBUG[2025-06-28 16:04:00.464][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-06-28 16:04:00.465][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-06-28 16:04:00.467][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-06-28 16:04:00.468][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:04:00.469][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:04:00.470][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:04:00.474][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:04:00.475][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:04:00.476][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:04:00.477][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:04:00.479][ef$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:04:00.480][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:04:00.481][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:00.481][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:00.483][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:04:00.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:04:00.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:00.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:00.486][ef$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:04:00.487][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:04:00.488][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:00.489][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:00.490][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:04:00.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:04:00.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:00.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:00.494][ef$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:04:00.495][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:04:00.496][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:00.497][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:00.498][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:04:00.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:04:00.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:00.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:00.501][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:04:00.502][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:04:00.503][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:00.504][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:00.505][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:04:00.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:04:00.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:00.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:00.509][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:04:00.510][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:04:00.511][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:00.512][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:00.513][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:04:00.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:04:00.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:00.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:00.516][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:00.517][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:00.518][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:00.519][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:00.520][ef$get] Asked field names are: mass.
biodb.TRACE[2025-06-28 16:04:00.521][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:00.522][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:00.523][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:00.524][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-06-28 16:04:00.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:00.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:00.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:00.528][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:00.529][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:00.529][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:00.530][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:00.531][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:00.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:00.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:00.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:00.535][ef$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:04:00.536][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:04:00.537][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:00.538][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:00.539][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:04:00.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:04:00.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:00.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:00.543][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-06-28 16:04:00.544][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:04:00.545][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:00.545][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:00.546][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-06-28 16:04:00.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:04:00.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:00.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:00.560][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:04:00.561][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:04:00.562][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:00.563][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:00.564][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:04:00.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:04:00.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:00.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:00.568][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:00.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:00.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:00.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:00.572][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:00.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:00.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:00.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:00.576][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:04:00.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:04:00.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:00.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:00.579][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:00.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:00.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:00.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:00.583][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:04:00.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:04:00.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:00.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:00.587][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:04:00.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:04:00.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:00.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:00.590][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:04:00.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:04:00.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:00.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:00.594][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:04:00.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:04:00.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:00.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:00.597][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:04:00.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:04:00.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:00.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:00.601][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:04:00.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:04:00.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:00.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:04:00.605][self$createEntryFromContent] Accession numbers: 69734.
biodb.TRACE[2025-06-28 16:04:00.606][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:00.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:00.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:00.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:00.609][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:00.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:00.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:00.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:00.613][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:00.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:00.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:00.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:04:00.616][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:04:00.617][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:04:00.618][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:04:00.622][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:04:00.623][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:04:00.624][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:04:00.624][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-28 16:04:00.625][private$loadEntries] Creating entries from ids [1]: "79978".
biodb.DEBUG[2025-06-28 16:04:00.626][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-06-28 16:04:00.628][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
biodb.DEBUG[2025-06-28 16:04:00.629][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-06-28 16:04:00.630][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-06-28 16:04:00.631][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-06-28 16:04:00.631][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-06-28 16:04:00.634][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:04:00.635][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:04:00.635][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:04:00.639][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:04:00.640][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:04:00.641][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:04:00.642][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-06-28 16:04:00.643][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=79978".
fscache.INFO [2025-06-28 16:04:00.645][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
sched.DEBUG[2025-06-28 16:04:00.646][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-06-28 16:04:00.646][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-06-28 16:04:00.648][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=79978".
sched.TRACE[2025-06-28 16:04:00.995][try_get_rcurl_content] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=79978).
fscache.INFO [2025-06-28 16:04:01.339][private$cache$saveContents] Save 1 contents to /home/biocbuild/.cache/R/sched.
fscache.INFO [2025-06-28 16:04:01.344][private$cache$saveContents] Save 1 contents to /home/biocbuild/.cache/R/sched.
sched.DEBUG[2025-06-28 16:04:01.346][scheduler$sendRequest] Retrieved content saved to cache.
fscache.INFO [2025-06-28 16:04:01.349][cch$saveContents] Save 1 contents to /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
biodb.DEBUG[2025-06-28 16:04:01.352][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-06-28 16:04:01.355][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-06-28 16:04:01.357][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-06-28 16:04:01.361][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:04:01.363][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:04:01.365][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:04:01.374][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:04:01.376][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:04:01.378][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:04:01.380][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:04:01.384][ef$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:04:01.386][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:04:01.388][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:01.389][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:01.391][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:04:01.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:04:01.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:01.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:01.397][ef$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:04:01.399][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:04:01.400][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:01.401][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:01.403][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:04:01.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:04:01.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:01.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:01.408][ef$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:04:01.409][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:04:01.410][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:01.412][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:01.413][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:04:01.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:04:01.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:01.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:01.417][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:04:01.419][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:04:01.420][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:01.421][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:01.422][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:04:01.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:04:01.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:01.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:01.426][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:04:01.427][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:04:01.428][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:01.429][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:01.430][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:04:01.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:04:01.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:01.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:01.433][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:01.434][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:01.435][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:01.436][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:01.437][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:01.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:01.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:01.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:01.441][ef$get] Asked field names are: mass.
biodb.TRACE[2025-06-28 16:04:01.442][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:01.443][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:01.444][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:01.445][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-06-28 16:04:01.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:01.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:01.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:01.449][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:01.450][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:01.450][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:01.451][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:01.452][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:01.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:01.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:01.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:01.456][ef$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:04:01.457][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:04:01.458][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:01.459][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:01.460][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:04:01.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:04:01.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:01.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:01.464][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-06-28 16:04:01.465][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:04:01.466][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:01.466][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:01.467][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-06-28 16:04:01.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:04:01.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:01.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:01.471][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:04:01.472][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:04:01.473][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:01.474][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:01.475][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:04:01.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:04:01.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:01.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:01.479][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:01.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:01.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:01.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:01.482][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:01.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:01.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:01.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:01.486][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:04:01.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:04:01.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:01.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:01.490][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:01.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:01.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:01.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:01.493][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:04:01.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:04:01.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:01.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:01.497][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:04:01.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:04:01.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:01.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:01.500][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:04:01.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:04:01.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:01.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:01.504][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:04:01.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:04:01.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:01.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:01.508][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:04:01.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:04:01.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:01.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:01.511][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:04:01.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:04:01.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:01.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:04:01.515][self$createEntryFromContent] Accession numbers: 79978.
biodb.TRACE[2025-06-28 16:04:01.516][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:01.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:01.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:01.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:01.520][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:01.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:01.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:01.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:01.532][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:01.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:01.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:01.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:04:01.537][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:04:01.538][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:04:01.539][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:04:01.543][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:04:01.544][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:04:01.545][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:04:01.545][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-06-28 16:04:01.546][private$loadEntries] Creating entries from ids [1]: "88771".
biodb.DEBUG[2025-06-28 16:04:01.547][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
fscache.INFO [2025-06-28 16:04:01.549][cch$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
biodb.DEBUG[2025-06-28 16:04:01.550][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2025-06-28 16:04:01.551][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2025-06-28 16:04:01.552][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-06-28 16:04:01.552][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-06-28 16:04:01.555][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:04:01.556][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:04:01.556][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:04:01.560][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:04:01.561][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:04:01.562][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:04:01.563][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-06-28 16:04:01.564][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=88771".
fscache.INFO [2025-06-28 16:04:01.566][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
sched.DEBUG[2025-06-28 16:04:01.567][private$doSendRequestLoop] Request header is: "".
sched.DEBUG[2025-06-28 16:04:01.567][private$doSendRequestLoop] Request body is "".
sched.TRACE[2025-06-28 16:04:01.569][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=88771".
sched.TRACE[2025-06-28 16:04:01.931][try_get_rcurl_content] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=88771).
fscache.INFO [2025-06-28 16:04:02.282][private$cache$saveContents] Save 1 contents to /home/biocbuild/.cache/R/sched.
fscache.INFO [2025-06-28 16:04:02.287][private$cache$saveContents] Save 1 contents to /home/biocbuild/.cache/R/sched.
sched.DEBUG[2025-06-28 16:04:02.289][scheduler$sendRequest] Retrieved content saved to cache.
fscache.INFO [2025-06-28 16:04:02.292][cch$saveContents] Save 1 contents to /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649.
biodb.DEBUG[2025-06-28 16:04:02.295][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-06-28 16:04:02.298][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2025-06-28 16:04:02.300][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2025-06-28 16:04:02.304][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:04:02.305][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:04:02.307][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:04:02.317][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:04:02.319][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:04:02.321][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:04:02.323][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:04:02.327][ef$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:04:02.329][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:04:02.331][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:02.332][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:02.334][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:04:02.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:04:02.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:02.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:02.340][ef$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:04:02.342][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:04:02.343][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:02.345][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:02.346][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:04:02.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:04:02.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:02.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:02.351][ef$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:04:02.353][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:04:02.354][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:02.355][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:02.357][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:04:02.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:04:02.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:02.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:02.361][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:04:02.362][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:04:02.363][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:02.364][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:02.365][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:04:02.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:04:02.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:02.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:02.369][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:04:02.370][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:04:02.371][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:02.372][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:02.373][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:04:02.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:04:02.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:02.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:02.377][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:02.378][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:02.379][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:02.380][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:02.381][ef$get] Asked field names are: mass.
biodb.TRACE[2025-06-28 16:04:02.382][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:02.383][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:02.383][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:02.385][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2025-06-28 16:04:02.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:02.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:02.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:02.388][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:02.389][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:02.390][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:02.391][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:02.392][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:02.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:02.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:02.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:02.396][ef$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:04:02.397][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:04:02.398][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:02.399][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:02.400][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:04:02.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:04:02.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:02.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:02.404][ef$get] Asked field names are: n_stars.
biodb.TRACE[2025-06-28 16:04:02.405][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:04:02.405][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:02.406][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:02.407][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2025-06-28 16:04:02.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:04:02.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:02.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:02.411][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:04:02.412][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:04:02.413][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:02.414][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:02.415][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:04:02.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:04:02.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:02.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:02.419][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:02.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:02.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:02.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:02.422][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:02.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:02.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:02.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:02.426][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:04:02.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:04:02.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:02.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:02.430][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:02.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:02.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:02.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:02.433][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:04:02.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:04:02.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:02.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:02.437][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:04:02.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:04:02.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:02.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:02.441][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:04:02.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:04:02.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:02.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:02.444][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:04:02.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:04:02.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:02.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:02.448][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:04:02.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:04:02.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:02.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:02.452][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:04:02.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:04:02.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:02.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:04:02.455][self$createEntryFromContent] Accession numbers: 88771.
biodb.TRACE[2025-06-28 16:04:02.456][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:02.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:02.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:02.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:02.460][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:02.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:02.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:02.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:02.463][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:02.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:02.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:02.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:04:02.467][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:04:02.468][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:04:02.469][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:04:02.473][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:04:02.474][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:04:02.475][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:04:02.475][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:04:02.476][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:02.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:02.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:02.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:02.480][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:02.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:02.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:02.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:02.484][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:02.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:02.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:02.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:04:02.487][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:04:02.488][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:04:02.489][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:04:02.493][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:04:02.494][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:04:02.494][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:04:02.495][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:04:02.496][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:02.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:02.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:02.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:02.500][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:02.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:02.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:02.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:02.504][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:02.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:02.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:02.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:04:02.507][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-06-28 16:04:02.509][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:04:02.510][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:04:02.510][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:04:02.514][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:04:02.515][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:04:02.516][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:04:02.517][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:04:02.518][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:02.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:02.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:02.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:02.531][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:02.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:02.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:02.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:02.536][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:04:02.536][private$selectFields]
biodb.TRACE[2025-06-28 16:04:02.537][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-06-28 16:04:02.538][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-06-28 16:04:02.539][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:04:02.540][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:02.541][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:02.542][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:02.543][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:02.544][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:02.545][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:02.546][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:02.547][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:02.547][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:04:02.548][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:04:02.549][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:02.550][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:02.551][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:02.552][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:02.553][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-06-28 16:04:02.554][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:02.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:02.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:02.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:02.557][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:02.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:02.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:02.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:02.561][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:02.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:02.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:02.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:02.565][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2025-06-28 16:04:02.566][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:04:02.567][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:04:02.568][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:04:02.572][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:04:02.573][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:04:02.573][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:04:02.574][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:04:02.575][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:02.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:02.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:02.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:02.579][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:02.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:02.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:02.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:02.582][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:04:02.583][private$selectFields]
biodb.TRACE[2025-06-28 16:04:02.584][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-06-28 16:04:02.585][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-06-28 16:04:02.586][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:04:02.587][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:02.588][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:02.589][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:02.589][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:02.590][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:02.591][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:02.592][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:02.593][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:02.594][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:04:02.595][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:04:02.596][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:02.597][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:02.598][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:02.598][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:02.599][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-06-28 16:04:02.600][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:02.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:02.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:02.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:02.604][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:02.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:02.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:02.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:02.607][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:02.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:02.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:02.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:02.611][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [91601].
biodb.DEBUG[2025-06-28 16:04:02.612][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:04:02.613][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:04:02.614][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:04:02.618][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:04:02.619][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:04:02.619][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:04:02.620][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:04:02.621][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:02.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:02.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:02.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:02.625][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:02.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:02.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:02.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:02.629][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:04:02.629][private$selectFields]
biodb.TRACE[2025-06-28 16:04:02.630][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-06-28 16:04:02.631][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-06-28 16:04:02.632][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:04:02.633][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:02.634][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:02.635][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:02.636][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:02.637][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:02.638][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:02.638][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:02.639][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:02.640][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:04:02.641][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:04:02.642][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:02.643][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:02.644][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:02.645][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:02.646][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-06-28 16:04:02.647][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:02.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:02.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:02.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:02.650][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:02.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:02.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:02.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:02.654][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:02.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:02.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:02.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:02.658][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [95147].
biodb.DEBUG[2025-06-28 16:04:02.659][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-06-28 16:04:02.660][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-06-28 16:04:02.661][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:04:02.662][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:04:02.663][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:04:02.667][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:04:02.668][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:04:02.669][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:04:02.670][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-06-28 16:04:02.672][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.1*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-06-28 16:04:02.674][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-06-28 16:04:02.680][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/10aed56c10c2ef392c152ae3e17290c4.content.
sched.DEBUG[2025-06-28 16:04:02.682][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-06-28 16:04:02.687][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:04:02.688][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:04:02.689][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:04:02.693][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:04:02.694][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:04:02.694][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:04:02.695][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:04:02.696][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:02.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:02.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:02.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:02.700][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:02.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:02.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:02.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:02.704][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:02.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:02.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:02.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:04:02.707][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:04:02.708][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:04:02.709][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:04:02.713][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:04:02.714][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:04:02.715][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:04:02.716][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:04:02.717][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:02.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:02.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:02.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:02.720][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:02.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:02.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:02.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:02.724][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:02.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:02.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:02.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:04:02.728][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:04:02.728][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:04:02.729][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:04:02.733][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:04:02.734][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:04:02.735][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:04:02.736][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:04:02.737][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:02.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:02.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:02.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:02.740][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:02.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:02.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:02.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:02.744][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:02.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:02.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:02.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:04:02.748][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:04:02.748][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:04:02.749][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:04:02.753][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:04:02.754][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:04:02.755][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:04:02.756][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:04:02.757][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:02.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:02.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:02.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:02.760][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:02.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:02.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:02.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:02.764][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:02.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:02.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:02.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:04:02.768][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-06-28 16:04:02.769][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:04:02.770][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:04:02.777][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:04:02.782][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:04:02.783][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:04:02.784][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:04:02.784][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:04:02.785][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:02.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:02.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:02.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:02.789][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:02.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:02.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:02.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:02.793][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:04:02.794][private$selectFields]
biodb.TRACE[2025-06-28 16:04:02.795][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-06-28 16:04:02.795][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-06-28 16:04:02.796][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:04:02.797][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:02.798][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:02.799][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:02.800][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:02.801][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:02.802][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:02.803][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:02.803][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:02.804][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:04:02.805][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:04:02.806][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:02.807][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:02.808][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:02.809][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:02.810][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-06-28 16:04:02.811][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:02.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:02.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:02.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:02.814][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:02.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:02.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:02.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:02.818][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:02.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:02.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:02.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:02.822][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [636].
biodb.DEBUG[2025-06-28 16:04:02.823][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:04:02.823][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:04:02.824][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:04:02.828][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:04:02.829][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:04:02.830][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:04:02.831][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:04:02.832][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:02.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:02.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:02.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:02.835][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:02.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:02.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:02.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:02.839][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:04:02.840][private$selectFields]
biodb.TRACE[2025-06-28 16:04:02.841][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-06-28 16:04:02.842][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-06-28 16:04:02.843][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:04:02.843][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:02.844][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:02.845][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:02.846][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:02.847][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:02.848][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:02.849][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:02.850][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:02.851][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:04:02.852][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:04:02.853][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:02.854][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:02.854][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:02.855][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:02.856][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-06-28 16:04:02.857][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:02.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:02.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:02.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:02.861][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:02.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:02.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:02.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:02.864][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:02.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:02.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:02.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:02.868][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [3014].
biodb.DEBUG[2025-06-28 16:04:02.869][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:04:02.870][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:04:02.871][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:04:02.875][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:04:02.876][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:04:02.877][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:04:02.878][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:04:02.879][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:02.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:02.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:02.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:02.883][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:02.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:02.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:02.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:02.886][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:04:02.887][private$selectFields]
biodb.TRACE[2025-06-28 16:04:02.888][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-06-28 16:04:02.889][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-06-28 16:04:02.890][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:04:02.891][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:02.892][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:02.893][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:02.894][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:02.895][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:02.895][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:02.896][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:02.897][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:02.898][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:04:02.899][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:04:02.900][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:02.901][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:02.902][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:02.903][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:02.904][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-06-28 16:04:02.905][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:02.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:02.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:02.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:02.908][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:02.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:02.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:02.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:02.912][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:02.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:02.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:02.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:02.916][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [7799].
biodb.DEBUG[2025-06-28 16:04:02.917][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-06-28 16:04:02.918][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-06-28 16:04:02.935][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:04:02.936][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:04:02.937][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:04:02.940][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:04:02.941][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:04:02.942][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:04:02.943][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-06-28 16:04:02.945][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.1*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-06-28 16:04:02.948][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-06-28 16:04:02.954][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/10aed56c10c2ef392c152ae3e17290c4.content.
sched.DEBUG[2025-06-28 16:04:02.955][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-06-28 16:04:02.960][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:04:02.961][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:04:02.962][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:04:02.966][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:04:02.967][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:04:02.968][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:04:02.968][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:04:02.969][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:02.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:02.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:02.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:02.973][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:02.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:02.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:02.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:02.977][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:02.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:02.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:02.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:04:02.981][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:04:02.981][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:04:02.982][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:04:02.986][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:04:02.987][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:04:02.988][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:04:02.989][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:04:02.990][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:02.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:02.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:02.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:02.994][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:02.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:02.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:02.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:02.997][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:02.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:02.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:03.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:04:03.001][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:04:03.002][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:04:03.003][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:04:03.007][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:04:03.008][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:04:03.008][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:04:03.009][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:04:03.010][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:03.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:03.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:03.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:03.014][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:03.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:03.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:03.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:03.018][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:03.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:03.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:03.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:04:03.028][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:04:03.029][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:04:03.030][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:04:03.034][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:04:03.035][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:04:03.036][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:04:03.037][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:04:03.038][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:03.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:03.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:03.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:03.042][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:03.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:03.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:03.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:03.045][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:03.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:03.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:03.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:04:03.049][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:04:03.050][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:04:03.051][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:04:03.055][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:04:03.056][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:04:03.056][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:04:03.057][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:04:03.058][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:03.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:03.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:03.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:03.062][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:03.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:03.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:03.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:03.065][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:03.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:03.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:03.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:04:03.069][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:04:03.070][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:04:03.071][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:04:03.075][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:04:03.076][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:04:03.076][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:04:03.077][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:04:03.078][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:03.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:03.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:03.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:03.082][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:03.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:03.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:03.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:03.086][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:03.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:03.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:03.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:04:03.089][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:04:03.090][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:04:03.091][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:04:03.095][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:04:03.096][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:04:03.096][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:04:03.097][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:04:03.098][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:03.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:03.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:03.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:03.102][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:03.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:03.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:03.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:03.105][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:03.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:03.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:03.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:04:03.109][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-06-28 16:04:03.111][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:04:03.111][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:04:03.112][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:04:03.116][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:04:03.117][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:04:03.118][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:04:03.119][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:04:03.120][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:03.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:03.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:03.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:03.123][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:03.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:03.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:03.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:03.127][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:04:03.128][private$selectFields]
biodb.TRACE[2025-06-28 16:04:03.129][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-06-28 16:04:03.130][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-06-28 16:04:03.130][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:04:03.131][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:03.132][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:03.133][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:03.134][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:03.135][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:03.136][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:03.137][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:03.138][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:03.139][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:04:03.140][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:04:03.140][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:03.141][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:03.142][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:03.143][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:03.144][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-06-28 16:04:03.145][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:03.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:03.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:03.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:03.149][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:03.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:03.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:03.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:03.152][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:03.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:03.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:03.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:03.156][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [3014].
biodb.DEBUG[2025-06-28 16:04:03.157][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:04:03.158][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:04:03.159][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:04:03.163][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:04:03.164][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:04:03.165][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:04:03.166][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:04:03.167][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:03.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:03.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:03.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:03.170][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:03.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:03.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:03.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:03.174][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:04:03.175][private$selectFields]
biodb.TRACE[2025-06-28 16:04:03.176][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-06-28 16:04:03.177][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-06-28 16:04:03.178][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:04:03.179][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:03.180][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:03.180][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:03.181][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:03.182][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:03.183][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:03.184][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:03.185][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:03.186][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:04:03.187][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:04:03.188][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:03.189][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:03.190][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:03.190][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:03.191][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-06-28 16:04:03.192][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:03.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:03.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:03.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:03.196][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:03.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:03.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:03.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:03.200][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:03.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:03.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:03.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:03.204][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [7799].
biodb.DEBUG[2025-06-28 16:04:03.205][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:04:03.205][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:04:03.206][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:04:03.210][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:04:03.211][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:04:03.212][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:04:03.213][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:04:03.214][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:03.215][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:03.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:03.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:03.218][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:03.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:03.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:03.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:03.221][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:04:03.222][private$selectFields]
biodb.TRACE[2025-06-28 16:04:03.223][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-06-28 16:04:03.224][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-06-28 16:04:03.225][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:04:03.226][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:03.227][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:03.228][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:03.229][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:03.230][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:03.231][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:03.231][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:03.232][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:03.233][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:04:03.234][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:04:03.235][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:03.236][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:03.237][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:03.238][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:03.239][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-06-28 16:04:03.240][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:03.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:03.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:03.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:03.243][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:03.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:03.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:03.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:03.247][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:03.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:03.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:03.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:03.251][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [34764].
biodb.DEBUG[2025-06-28 16:04:03.252][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-06-28 16:04:03.253][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-06-28 16:04:03.255][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:04:03.256][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:04:03.256][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:04:03.261][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:04:03.261][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:04:03.262][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:04:03.263][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-06-28 16:04:03.271][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-06-28 16:04:03.274][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-06-28 16:04:03.281][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/c90d0c20ab1b82ab9da517c0299e1056.content.
sched.DEBUG[2025-06-28 16:04:03.283][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-06-28 16:04:03.289][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:04:03.290][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:04:03.291][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:04:03.295][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:04:03.296][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:04:03.296][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:04:03.297][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:04:03.298][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:03.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:03.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:03.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:03.302][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:03.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:03.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:03.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:03.306][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:03.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:03.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:03.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:04:03.310][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:04:03.311][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:04:03.312][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:04:03.316][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:04:03.317][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:04:03.317][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:04:03.318][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:04:03.319][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:03.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:03.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:03.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:03.323][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:03.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:03.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:03.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:03.326][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:03.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:03.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:03.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:04:03.330][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:04:03.331][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:04:03.332][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:04:03.336][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:04:03.336][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:04:03.337][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:04:03.338][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:04:03.339][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:03.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:03.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:03.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:03.343][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:03.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:03.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:03.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:03.346][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:03.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:03.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:03.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:04:03.350][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:04:03.351][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:04:03.352][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:04:03.355][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:04:03.356][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:04:03.357][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:04:03.358][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:04:03.359][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:03.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:03.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:03.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:03.363][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:03.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:03.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:03.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:03.366][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:03.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:03.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:03.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:04:03.370][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-06-28 16:04:03.371][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:04:03.372][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:04:03.373][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:04:03.377][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:04:03.378][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:04:03.379][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:04:03.380][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:04:03.381][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:03.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:03.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:03.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:03.384][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:03.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:03.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:03.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:03.388][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:04:03.389][private$selectFields]
biodb.TRACE[2025-06-28 16:04:03.390][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-06-28 16:04:03.391][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-06-28 16:04:03.392][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:04:03.392][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:03.393][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:03.394][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:03.395][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:03.396][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:03.397][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:03.398][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:03.399][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:03.400][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:04:03.401][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:04:03.402][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:03.403][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:03.404][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:03.404][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:03.405][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-06-28 16:04:03.406][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:03.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:03.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:03.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:03.410][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:03.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:03.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:03.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:03.414][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:03.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:03.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:03.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:03.418][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [2535].
biodb.DEBUG[2025-06-28 16:04:03.419][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:04:03.420][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:04:03.420][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:04:03.425][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:04:03.425][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:04:03.426][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:04:03.427][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:04:03.428][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:03.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:03.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:03.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:03.432][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:03.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:03.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:03.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:03.436][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:04:03.436][private$selectFields]
biodb.TRACE[2025-06-28 16:04:03.437][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-06-28 16:04:03.438][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-06-28 16:04:03.439][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:04:03.440][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:03.441][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:03.442][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:03.443][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:03.444][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:03.445][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:03.446][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:03.446][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:03.447][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:04:03.448][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:04:03.449][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:03.450][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:03.451][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:03.452][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:03.453][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-06-28 16:04:03.454][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:03.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:03.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:03.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:03.457][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:03.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:03.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:03.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:03.461][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:03.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:03.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:03.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:03.465][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2025-06-28 16:04:03.466][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:04:03.467][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:04:03.468][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:04:03.472][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:04:03.473][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:04:03.474][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:04:03.475][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:04:03.476][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:03.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:03.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:03.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:03.479][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:03.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:03.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:03.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:03.483][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:04:03.484][private$selectFields]
biodb.TRACE[2025-06-28 16:04:03.485][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-06-28 16:04:03.486][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-06-28 16:04:03.487][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:04:03.487][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:03.488][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:03.489][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:03.490][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:03.491][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:03.492][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:03.493][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:03.494][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:03.495][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:04:03.496][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:04:03.497][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:03.498][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:03.499][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:03.499][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:03.500][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-06-28 16:04:03.501][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:03.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:03.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:03.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:03.505][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:03.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:03.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:03.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:03.509][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:03.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:03.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:03.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:03.513][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [16587].
biodb.DEBUG[2025-06-28 16:04:03.514][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-06-28 16:04:03.521][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-06-28 16:04:03.523][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:04:03.524][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:04:03.525][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:04:03.529][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:04:03.530][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:04:03.531][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:04:03.532][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-06-28 16:04:03.534][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=409.9*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-06-28 16:04:03.537][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-06-28 16:04:03.539][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/633ffa8aab56d260ba52bc860645ac89.content.
sched.DEBUG[2025-06-28 16:04:03.540][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-06-28 16:04:03.543][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:04:03.544][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:04:03.544][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:04:03.548][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:04:03.549][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:04:03.550][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:04:03.551][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:04:03.552][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:03.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:03.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:03.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:03.555][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:03.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:03.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:03.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:03.559][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:03.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:03.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:03.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:04:03.563][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:04:03.563][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:04:03.564][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:04:03.568][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:04:03.569][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:04:03.570][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:04:03.570][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:04:03.571][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:03.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:03.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:03.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:03.575][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:03.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:03.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:03.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:03.579][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:03.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:03.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:03.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:04:03.582][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:04:03.583][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:04:03.584][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:04:03.588][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:04:03.589][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:04:03.589][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:04:03.590][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:04:03.591][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:03.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:03.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:03.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:03.595][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:03.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:03.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:03.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:03.598][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:03.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:03.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:03.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:04:03.602][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:04:03.603][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:04:03.604][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:04:03.607][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:04:03.608][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:04:03.609][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:04:03.610][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:04:03.611][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:03.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:03.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:03.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:03.615][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:03.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:03.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:03.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:03.618][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:03.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:03.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:03.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:04:03.622][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:04:03.623][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:04:03.624][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:04:03.628][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:04:03.628][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:04:03.629][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:04:03.630][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:04:03.631][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:03.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:03.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:03.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:03.635][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:03.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:03.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:03.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:03.638][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:03.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:03.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:03.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:04:03.642][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-06-28 16:04:03.644][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:04:03.645][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:04:03.645][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:04:03.649][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:04:03.650][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:04:03.651][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:04:03.652][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:04:03.653][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:03.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:03.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:03.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:03.656][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:03.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:03.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:03.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:03.660][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:04:03.661][private$selectFields]
biodb.TRACE[2025-06-28 16:04:03.662][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-06-28 16:04:03.663][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-06-28 16:04:03.664][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:04:03.664][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:03.665][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:03.666][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:03.667][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:03.668][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:03.669][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:03.670][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:03.671][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:03.672][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:04:03.673][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:04:03.674][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:03.675][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:03.675][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:03.676][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:03.677][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-06-28 16:04:03.678][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:03.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:03.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:03.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:03.682][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:03.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:03.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:03.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:03.686][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:03.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:03.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:03.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:03.690][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [31303].
biodb.DEBUG[2025-06-28 16:04:03.690][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:04:03.691][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:04:03.692][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:04:03.696][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:04:03.697][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:04:03.698][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:04:03.699][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:04:03.700][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:03.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:03.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:03.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:03.703][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:03.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:03.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:03.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:03.707][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:04:03.708][private$selectFields]
biodb.TRACE[2025-06-28 16:04:03.709][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-06-28 16:04:03.710][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-06-28 16:04:03.711][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:04:03.712][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:03.713][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:03.713][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:03.714][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:03.715][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:03.716][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:03.717][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:03.718][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:03.719][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:04:03.720][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:04:03.721][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:03.722][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:03.723][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:03.723][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:03.724][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-06-28 16:04:03.725][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:03.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:03.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:03.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:03.729][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:03.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:03.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:03.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:03.733][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:03.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:03.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:03.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:03.737][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [81767].
biodb.DEBUG[2025-06-28 16:04:03.738][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:04:03.738][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:04:03.739][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:04:03.743][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:04:03.744][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:04:03.745][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:04:03.746][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:04:03.747][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:03.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:03.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:03.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:03.751][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:03.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:03.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:03.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:03.754][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:04:03.755][private$selectFields]
biodb.TRACE[2025-06-28 16:04:03.756][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-06-28 16:04:03.757][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-06-28 16:04:03.758][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:04:03.918][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:03.919][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:03.920][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:03.921][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:03.922][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:03.923][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:03.924][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:03.925][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:03.925][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:04:03.926][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:04:03.927][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:03.928][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:03.929][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:03.930][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:03.931][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-06-28 16:04:03.932][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:03.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:03.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:03.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:03.935][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:03.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:03.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:03.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:03.939][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:03.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:03.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:03.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:03.942][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [131378].
biodb.DEBUG[2025-06-28 16:04:03.943][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-06-28 16:04:03.944][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-06-28 16:04:03.960][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:04:03.961][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:04:03.962][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:04:03.966][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:04:03.966][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:04:03.967][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:04:03.968][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-06-28 16:04:03.970][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-06-28 16:04:03.973][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-06-28 16:04:03.974][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/2e865a03592d6effdf242ff63104f35a.content.
sched.DEBUG[2025-06-28 16:04:03.975][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
sched.DEBUG[2025-06-28 16:04:03.978][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-06-28 16:04:03.980][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-06-28 16:04:03.982][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/f0c73645ca32490f91d503a462d812b2.content.
sched.DEBUG[2025-06-28 16:04:03.983][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-06-28 16:04:03.985][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:04:03.986][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:04:03.987][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:04:03.990][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:04:03.991][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:04:03.992][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:04:03.993][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:04:03.994][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:03.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:03.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:03.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:03.997][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:03.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:03.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:04.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:04.001][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:04.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:04.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:04.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:04:04.004][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:04:04.005][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:04:04.006][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:04:04.010][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:04:04.011][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:04:04.011][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:04:04.012][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:04:04.013][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:04.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:04.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:04.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:04.017][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:04.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:04.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:04.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:04.020][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:04.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:04.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:04.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:04:04.024][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:04:04.025][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:04:04.025][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:04:04.029][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:04:04.030][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:04:04.031][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:04:04.032][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:04:04.033][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:04.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:04.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:04.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:04.036][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:04.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:04.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:04.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:04.040][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:04.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:04.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:04.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:04:04.043][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-06-28 16:04:04.045][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:04:04.046][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:04:04.047][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:04:04.050][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:04:04.051][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:04:04.052][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:04:04.053][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:04:04.054][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:04.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:04.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:04.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:04.057][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:04.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:04.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:04.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:04.061][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:04:04.062][private$selectFields]
biodb.TRACE[2025-06-28 16:04:04.063][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-06-28 16:04:04.063][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-06-28 16:04:04.064][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:04:04.065][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:04.066][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:04.067][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:04.068][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:04.069][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:04.070][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:04.071][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:04.072][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:04.073][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:04:04.073][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:04:04.074][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:04.075][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:04.076][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:04.077][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:04.078][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-06-28 16:04:04.079][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:04.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:04.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:04.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:04.083][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:04.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:04.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:04.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:04.086][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:04.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:04.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:04.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:04.090][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4648].
biodb.DEBUG[2025-06-28 16:04:04.091][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:04:04.092][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:04:04.093][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:04:04.097][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:04:04.098][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:04:04.099][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:04:04.099][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:04:04.100][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:04.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:04.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:04.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:04.104][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:04.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:04.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:04.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:04.108][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:04:04.109][private$selectFields]
biodb.TRACE[2025-06-28 16:04:04.109][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-06-28 16:04:04.110][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-06-28 16:04:04.111][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:04:04.112][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:04.113][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:04.114][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:04.115][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:04.116][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:04.117][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:04.118][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:04.118][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:04.119][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:04:04.120][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:04:04.121][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:04.122][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:04.123][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:04.124][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:04.125][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-06-28 16:04:04.126][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:04.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:04.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:04.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:04.129][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:04.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:04.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:04.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:04.133][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:04.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:04.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:04.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:04.137][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2025-06-28 16:04:04.138][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:04:04.139][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:04:04.139][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:04:04.144][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:04:04.144][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:04:04.145][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:04:04.146][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:04:04.147][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:04.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:04.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:04.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:04.151][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:04.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:04.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:04.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:04.154][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:04:04.155][private$selectFields]
biodb.TRACE[2025-06-28 16:04:04.156][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-06-28 16:04:04.157][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-06-28 16:04:04.158][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:04:04.159][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:04.160][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:04.161][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:04.162][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:04.162][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:04.167][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:04.168][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:04.169][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:04.170][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:04:04.171][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:04:04.172][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:04.172][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:04.173][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:04.174][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:04.175][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-06-28 16:04:04.176][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:04.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:04.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:04.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:04.180][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:04.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:04.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:04.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:04.183][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:04.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:04.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:04.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:04.187][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [62447].
biodb.DEBUG[2025-06-28 16:04:04.188][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-06-28 16:04:04.189][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-06-28 16:04:04.191][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:04:04.191][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:04:04.192][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:04:04.196][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:04:04.197][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:04:04.198][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:04:04.199][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-06-28 16:04:04.201][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.29*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-06-28 16:04:04.203][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-06-28 16:04:04.206][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/aad5aa7c63b98774a5df46d96a4e7cac.content.
sched.DEBUG[2025-06-28 16:04:04.207][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-06-28 16:04:04.209][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:04:04.210][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:04:04.211][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:04:04.214][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:04:04.215][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:04:04.216][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:04:04.217][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:04:04.218][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:04.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:04.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:04.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:04.221][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:04.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:04.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:04.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:04.225][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:04.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:04.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:04.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:04:04.229][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:04:04.229][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:04:04.230][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:04:04.234][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:04:04.235][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:04:04.236][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:04:04.236][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:04:04.237][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:04.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:04.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:04.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:04.241][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:04.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:04.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:04.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:04.244][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:04.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:04.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:04.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:04:04.248][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:04:04.249][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:04:04.250][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:04:04.253][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:04:04.254][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:04:04.255][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:04:04.256][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:04:04.257][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:04.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:04.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:04.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:04.260][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:04.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:04.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:04.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:04.264][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:04.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:04.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:04.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:04:04.268][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-06-28 16:04:04.269][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:04:04.270][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:04:04.271][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:04:04.274][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:04:04.275][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:04:04.276][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:04:04.277][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:04:04.278][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:04.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:04.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:04.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:04.281][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:04.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:04.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:04.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:04.285][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:04:04.286][private$selectFields]
biodb.TRACE[2025-06-28 16:04:04.287][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-06-28 16:04:04.287][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-06-28 16:04:04.288][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:04:04.289][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:04.290][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:04.291][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:04.292][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:04.293][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:04.294][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:04.294][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:04.295][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:04.296][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:04:04.297][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:04:04.298][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:04.299][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:04.300][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:04.301][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:04.301][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-06-28 16:04:04.302][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:04.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:04.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:04.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:04.306][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:04.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:04.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:04.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:04.310][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:04.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:04.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:04.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:04.313][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2025-06-28 16:04:04.314][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:04:04.315][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:04:04.316][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:04:04.320][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:04:04.321][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:04:04.322][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:04:04.322][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:04:04.323][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:04.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:04.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:04.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:04.327][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:04.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:04.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:04.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:04.331][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:04:04.331][private$selectFields]
biodb.TRACE[2025-06-28 16:04:04.332][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-06-28 16:04:04.333][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-06-28 16:04:04.334][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:04:04.335][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:04.336][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:04.337][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:04.338][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:04.338][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:04.339][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:04.340][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:04.341][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:04.342][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:04:04.343][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:04:04.344][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:04.345][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:04.346][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:04.346][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:04.347][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-06-28 16:04:04.348][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:04.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:04.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:04.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:04.352][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:04.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:04.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:04.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:04.355][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:04.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:04.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:04.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:04.359][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [91601].
biodb.DEBUG[2025-06-28 16:04:04.360][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:04:04.361][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:04:04.362][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:04:04.366][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:04:04.367][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:04:04.367][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:04:04.368][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:04:04.369][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:04.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:04.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:04.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:04.373][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:04.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:04.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:04.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:04.376][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:04:04.377][private$selectFields]
biodb.TRACE[2025-06-28 16:04:04.378][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-06-28 16:04:04.379][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-06-28 16:04:04.380][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:04:04.381][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:04.382][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:04.383][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:04.383][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:04.384][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:04.385][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:04.386][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:04.387][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:04.388][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:04:04.389][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:04:04.390][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:04.391][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:04.392][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:04.392][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:04.393][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-06-28 16:04:04.394][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:04.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:04.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:04.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:04.398][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:04.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:04.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:04.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:04.401][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:04.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:04.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:04.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:04.405][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [95147].
biodb.DEBUG[2025-06-28 16:04:04.406][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-06-28 16:04:04.407][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-06-28 16:04:04.409][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:04:04.410][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:04:04.411][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:04:04.418][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:04:04.419][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:04:04.420][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:04:04.421][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-06-28 16:04:04.423][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.17*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-06-28 16:04:04.425][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-06-28 16:04:04.429][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/039d0a183be9e894c19f49abb7cadca8.content.
sched.DEBUG[2025-06-28 16:04:04.430][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-06-28 16:04:04.432][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:04:04.433][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:04:04.434][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:04:04.438][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:04:04.439][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:04:04.439][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:04:04.440][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:04:04.441][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:04.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:04.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:04.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:04.445][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:04.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:04.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:04.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:04.448][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:04.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:04.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:04.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:04:04.452][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:04:04.453][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:04:04.454][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:04:04.457][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:04:04.458][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:04:04.459][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:04:04.460][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:04:04.461][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:04.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:04.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:04.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:04.464][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:04.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:04.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:04.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:04.468][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:04.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:04.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:04.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:04:04.471][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:04:04.472][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:04:04.473][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:04:04.477][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:04:04.478][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:04:04.478][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:04:04.479][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:04:04.480][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:04.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:04.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:04.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:04.484][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:04.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:04.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:04.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:04.487][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:04.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:04.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:04.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:04:04.491][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-06-28 16:04:04.492][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:04:04.493][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:04:04.494][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:04:04.498][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:04:04.499][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:04:04.499][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:04:04.500][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:04:04.501][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:04.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:04.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:04.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:04.505][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:04.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:04.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:04.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:04.508][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:04:04.509][private$selectFields]
biodb.TRACE[2025-06-28 16:04:04.510][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-06-28 16:04:04.511][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-06-28 16:04:04.512][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:04:04.513][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:04.514][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:04.514][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:04.515][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:04.516][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:04.517][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:04.518][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:04.519][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:04.520][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:04:04.521][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:04:04.521][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:04.522][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:04.523][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:04.524][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:04.525][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-06-28 16:04:04.526][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:04.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:04.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:04.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:04.529][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:04.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:04.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:04.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:04.533][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:04.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:04.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:04.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:04.537][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [636].
biodb.DEBUG[2025-06-28 16:04:04.538][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:04:04.538][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:04:04.539][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:04:04.543][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:04:04.544][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:04:04.545][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:04:04.546][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:04:04.547][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:04.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:04.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:04.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:04.550][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:04.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:04.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:04.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:04.554][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:04:04.555][private$selectFields]
biodb.TRACE[2025-06-28 16:04:04.555][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-06-28 16:04:04.556][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-06-28 16:04:04.557][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:04:04.558][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:04.559][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:04.560][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:04.561][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:04.562][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:04.563][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:04.563][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:04.564][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:04.565][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:04:04.566][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:04:04.567][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:04.568][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:04.569][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:04.570][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:04.571][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-06-28 16:04:04.572][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:04.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:04.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:04.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:04.575][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:04.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:04.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:04.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:04.579][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:04.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:04.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:04.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:04.583][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [64199].
biodb.DEBUG[2025-06-28 16:04:04.584][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:04:04.585][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:04:04.586][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:04:04.590][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:04:04.590][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:04:04.591][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:04:04.592][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:04:04.593][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:04.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:04.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:04.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:04.597][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:04.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:04.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:04.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:04.600][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:04:04.601][private$selectFields]
biodb.TRACE[2025-06-28 16:04:04.602][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-06-28 16:04:04.603][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-06-28 16:04:04.604][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:04:04.605][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:04.605][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:04.606][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:04.607][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:04.608][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:04.609][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:04.610][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:04.611][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:04.612][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:04:04.613][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:04:04.613][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:04.614][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:04.615][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:04.616][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:04.617][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-06-28 16:04:04.618][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:04.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:04.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:04.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:04.621][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:04.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:04.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:04.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:04.625][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:04.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:04.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:04.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:04.629][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [65648].
biodb.DEBUG[2025-06-28 16:04:04.630][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-06-28 16:04:04.631][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-06-28 16:04:04.647][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:04:04.648][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:04:04.649][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:04:04.652][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:04:04.653][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:04:04.654][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:04:04.655][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-06-28 16:04:04.657][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.3*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-06-28 16:04:04.659][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-06-28 16:04:04.668][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/76cb051f1eabf309f608d38ca52ffd0b.content.
sched.DEBUG[2025-06-28 16:04:04.669][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-06-28 16:04:04.672][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:04:04.673][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:04:04.674][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:04:04.677][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:04:04.678][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:04:04.679][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:04:04.680][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:04:04.681][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:04.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:04.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:04.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:04.684][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:04.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:04.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:04.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:04.688][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:04.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:04.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:04.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:04:04.692][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:04:04.692][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:04:04.693][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:04:04.697][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:04:04.698][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:04:04.699][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:04:04.699][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:04:04.700][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:04.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:04.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:04.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:04.704][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:04.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:04.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:04.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:04.708][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:04.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:04.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:04.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:04:04.711][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:04:04.712][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:04:04.713][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:04:04.716][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:04:04.717][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:04:04.718][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:04:04.719][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:04:04.720][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:04.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:04.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:04.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:04.723][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:04.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:04.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:04.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:04.727][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:04.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:04.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:04.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:04:04.731][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:04:04.731][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:04:04.732][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:04:04.736][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:04:04.737][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:04:04.738][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:04:04.738][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:04:04.739][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:04.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:04.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:04.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:04.743][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:04.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:04.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:04.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:04.747][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:04.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:04.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:04.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:04:04.750][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:04:04.751][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:04:04.752][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:04:04.755][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:04:04.756][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:04:04.757][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:04:04.758][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:04:04.759][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:04.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:04.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:04.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:04.762][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:04.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:04.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:04.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:04.766][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:04.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:04.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:04.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:04:04.770][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:04:04.771][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:04:04.771][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:04:04.775][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:04:04.776][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:04:04.777][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:04:04.778][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:04:04.779][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:04.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:04.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:04.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:04.782][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:04.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:04.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:04.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:04.786][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:04.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:04.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:04.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:04:04.789][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:04:04.790][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:04:04.791][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:04:04.795][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:04:04.796][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:04:04.796][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:04:04.797][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:04:04.798][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:04.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:04.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:04.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:04.802][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:04.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:04.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:04.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:04.806][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:04.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:04.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:04.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:04:04.809][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:04:04.810][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:04:04.811][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:04:04.815][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:04:04.816][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:04:04.816][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:04:04.817][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:04:04.818][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:04.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:04.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:04.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:04.822][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:04.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:04.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:04.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:04.825][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:04.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:04.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:04.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:04:04.829][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-06-28 16:04:04.831][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:04:04.831][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:04:04.832][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:04:04.836][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:04:04.837][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:04:04.838][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:04:04.838][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:04:04.839][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:04.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:04.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:04.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:04.843][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:04.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:04.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:04.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:04.847][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:04:04.847][private$selectFields]
biodb.TRACE[2025-06-28 16:04:04.848][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-06-28 16:04:04.849][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-06-28 16:04:04.850][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:04:04.851][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:04.852][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:04.853][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:04.854][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:04.854][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:04.855][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:04.856][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:04.857][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:04.858][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:04:04.859][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:04:04.860][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:04.861][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:04.862][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:04.862][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:04.863][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-06-28 16:04:04.864][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:04.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:04.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:04.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:04.868][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:04.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:04.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:04.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:04.872][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:04.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:04.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:04.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:04.875][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4648].
biodb.DEBUG[2025-06-28 16:04:04.876][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:04:04.877][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:04:04.878][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:04:04.882][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:04:04.883][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:04:04.884][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:04:04.885][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:04:04.886][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:04.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:04.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:04.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:04.889][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:04.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:04.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:04.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:04.893][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:04:04.894][private$selectFields]
biodb.TRACE[2025-06-28 16:04:04.895][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-06-28 16:04:04.896][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-06-28 16:04:04.897][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:04:04.897][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:04.898][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:04.899][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:04.900][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:04.901][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:04.902][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:04.903][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:04.904][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:04.905][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:04:04.906][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:04:04.907][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:04.908][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:04.908][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:04.909][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:04.910][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-06-28 16:04:04.911][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:04.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:04.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:04.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:04.919][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:04.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:04.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:04.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:04.922][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:04.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:04.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:04.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:04.926][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2025-06-28 16:04:04.927][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:04:04.928][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:04:04.929][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:04:04.933][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:04:04.934][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:04:04.935][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:04:04.936][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:04:04.937][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:04.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:04.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:04.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:04.940][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:04.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:04.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:04.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:04.944][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:04:04.945][private$selectFields]
biodb.TRACE[2025-06-28 16:04:04.945][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-06-28 16:04:04.946][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-06-28 16:04:04.947][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:04:04.948][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:04.949][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:04.950][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:04.951][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:04.952][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:04.953][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:04.953][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:04.954][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:04.955][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:04:04.956][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:04:04.957][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:04.958][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:04.959][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:04.959][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:04.960][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-06-28 16:04:04.961][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:04.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:04.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:04.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:04.965][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:04.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:04.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:04.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:04.968][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:04.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:04.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:04.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:04.972][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [62447].
biodb.DEBUG[2025-06-28 16:04:04.973][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-06-28 16:04:04.974][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-06-28 16:04:04.976][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:04:04.977][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:04:04.977][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:04:04.981][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:04:04.982][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:04:04.983][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:04:04.984][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-06-28 16:04:04.986][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.2*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-06-28 16:04:04.988][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-06-28 16:04:04.995][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/3d37e3be2f5c6d64498effb7934e924b.content.
sched.DEBUG[2025-06-28 16:04:04.996][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-06-28 16:04:05.002][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:04:05.003][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:04:05.003][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:04:05.007][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:04:05.008][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:04:05.009][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:04:05.010][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:04:05.011][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:05.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:05.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:05.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:05.014][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:05.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:05.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:05.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:05.018][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:05.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:05.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:05.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:04:05.022][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:04:05.022][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:04:05.023][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:04:05.027][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:04:05.028][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:04:05.029][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:04:05.029][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:04:05.030][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:05.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:05.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:05.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:05.034][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:05.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:05.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:05.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:05.037][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:05.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:05.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:05.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:04:05.041][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:04:05.042][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:04:05.043][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:04:05.046][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:04:05.047][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:04:05.048][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:04:05.049][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:04:05.050][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:05.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:05.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:05.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:05.053][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:05.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:05.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:05.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:05.057][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:05.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:05.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:05.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:04:05.061][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:04:05.061][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:04:05.062][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:04:05.066][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:04:05.067][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:04:05.068][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:04:05.069][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:04:05.070][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:05.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:05.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:05.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:05.073][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:05.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:05.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:05.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:05.077][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:05.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:05.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:05.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:04:05.081][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:04:05.081][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:04:05.082][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:04:05.086][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:04:05.087][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:04:05.088][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:04:05.089][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:04:05.090][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:05.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:05.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:05.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:05.093][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:05.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:05.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:05.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:05.097][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:05.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:05.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:05.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:04:05.100][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:04:05.101][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:04:05.102][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:04:05.106][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:04:05.107][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:04:05.108][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:04:05.108][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:04:05.109][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:05.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:05.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:05.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:05.113][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:05.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:05.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:05.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:05.117][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:05.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:05.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:05.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:04:05.120][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:04:05.121][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:04:05.122][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:04:05.126][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:04:05.127][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:04:05.127][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:04:05.128][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:04:05.129][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:05.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:05.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:05.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:05.133][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:05.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:05.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:05.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:05.136][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:05.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:05.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:05.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:04:05.140][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:04:05.141][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:04:05.142][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:04:05.145][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:04:05.146][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:04:05.147][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:04:05.148][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:04:05.149][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:05.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:05.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:05.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:05.153][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:05.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:05.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:05.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:05.156][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:05.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:05.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:05.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:04:05.160][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:04:05.161][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:04:05.161][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:04:05.170][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:04:05.171][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:04:05.172][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:04:05.172][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:04:05.173][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:05.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:05.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:05.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:05.177][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:05.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:05.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:05.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:05.180][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:05.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:05.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:05.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:04:05.184][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:04:05.185][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:04:05.186][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:04:05.190][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:04:05.190][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:04:05.191][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:04:05.192][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:04:05.193][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:05.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:05.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:05.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:05.197][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:05.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:05.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:05.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:05.200][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:05.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:05.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:05.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:04:05.204][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:04:05.204][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:04:05.205][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:04:05.209][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:04:05.210][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:04:05.211][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:04:05.212][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:04:05.213][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:05.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:05.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:05.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:05.216][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:05.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:05.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:05.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:05.220][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:05.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:05.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:05.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:04:05.223][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:04:05.224][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:04:05.225][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:04:05.229][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:04:05.230][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:04:05.230][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:04:05.231][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:04:05.232][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:05.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:05.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:05.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:05.236][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:05.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:05.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:05.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:05.239][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:05.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:05.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:05.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:04:05.243][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:04:05.244][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:04:05.244][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:04:05.248][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:04:05.249][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:04:05.250][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:04:05.251][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:04:05.252][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:05.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:05.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:05.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:05.255][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:05.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:05.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:05.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:05.259][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:05.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:05.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:05.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:04:05.263][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:04:05.263][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:04:05.264][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:04:05.268][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:04:05.269][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:04:05.270][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:04:05.271][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:04:05.272][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:05.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:05.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:05.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:05.275][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:05.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:05.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:05.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:05.279][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:05.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:05.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:05.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:04:05.282][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:04:05.283][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:04:05.284][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:04:05.288][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:04:05.289][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:04:05.290][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:04:05.291][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:04:05.292][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:05.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:05.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:05.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:05.295][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:05.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:05.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:05.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:05.299][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:05.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:05.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:05.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:04:05.302][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:04:05.303][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:04:05.304][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:04:05.308][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:04:05.309][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:04:05.310][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:04:05.311][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:04:05.312][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:05.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:05.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:05.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:05.316][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:05.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:05.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:05.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:05.319][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:05.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:05.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:05.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:04:05.323][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:04:05.324][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:04:05.325][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:04:05.329][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:04:05.330][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:04:05.330][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:04:05.331][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:04:05.332][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:05.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:05.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:05.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:05.336][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:05.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:05.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:05.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:05.340][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:05.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:05.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:05.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:04:05.343][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:04:05.344][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:04:05.345][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:04:05.349][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:04:05.350][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:04:05.350][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:04:05.351][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:04:05.352][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:05.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:05.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:05.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:05.356][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:05.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:05.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:05.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:05.359][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:05.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:05.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:05.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:04:05.363][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:04:05.364][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:04:05.365][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:04:05.369][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:04:05.369][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:04:05.370][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:04:05.371][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:04:05.372][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:05.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:05.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:05.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:05.376][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:05.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:05.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:05.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:05.379][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:05.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:05.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:05.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:04:05.383][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:04:05.384][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:04:05.384][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:04:05.388][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:04:05.389][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:04:05.390][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:04:05.391][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:04:05.392][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:05.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:05.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:05.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:05.395][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:05.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:05.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:05.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:05.399][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:05.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:05.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:05.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:04:05.403][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:04:05.403][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:04:05.404][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:04:05.408][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:04:05.409][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:04:05.410][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:04:05.410][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:04:05.412][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:05.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:05.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:05.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:05.419][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:05.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:05.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:05.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:05.422][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:05.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:05.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:05.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:04:05.426][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:04:05.427][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:04:05.428][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:04:05.431][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:04:05.432][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:04:05.433][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:04:05.434][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:04:05.435][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:05.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:05.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:05.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:05.438][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:05.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:05.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:05.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:05.442][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:05.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:05.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:05.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:04:05.446][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:04:05.446][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:04:05.447][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:04:05.451][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:04:05.452][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:04:05.453][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:04:05.453][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:04:05.454][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:05.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:05.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:05.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:05.458][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:05.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:05.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:05.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:05.462][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:05.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:05.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:05.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:04:05.465][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:04:05.466][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:04:05.467][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:04:05.470][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:04:05.471][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:04:05.472][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:04:05.473][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:04:05.474][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:05.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:05.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:05.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:05.477][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:05.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:05.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:05.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:05.481][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:05.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:05.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:05.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:04:05.484][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:04:05.485][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:04:05.486][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:04:05.490][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:04:05.490][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:04:05.491][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:04:05.492][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:04:05.493][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:05.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:05.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:05.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:05.497][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:05.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:05.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:05.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:05.500][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:05.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:05.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:05.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:04:05.504][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:04:05.505][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:04:05.505][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:04:05.509][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:04:05.510][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:04:05.511][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:04:05.512][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:04:05.513][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:05.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:05.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:05.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:05.516][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:05.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:05.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:05.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:05.520][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:05.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:05.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:05.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:04:05.523][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:04:05.524][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:04:05.525][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:04:05.529][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:04:05.530][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:04:05.530][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:04:05.531][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:04:05.532][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:05.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:05.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:05.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:05.536][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:05.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:05.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:05.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:05.540][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:05.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:05.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:05.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:04:05.543][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:04:05.544][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:04:05.545][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:04:05.549][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:04:05.550][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:04:05.550][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:04:05.551][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:04:05.552][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:05.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:05.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:05.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:05.556][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:05.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:05.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:05.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:05.560][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:05.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:05.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:05.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:04:05.563][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:04:05.564][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:04:05.565][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:04:05.569][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:04:05.570][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:04:05.570][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:04:05.571][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:04:05.572][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:05.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:05.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:05.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:05.576][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:05.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:05.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:05.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:05.580][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:05.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:05.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:05.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:04:05.583][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:04:05.584][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:04:05.585][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:04:05.589][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:04:05.589][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:04:05.590][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:04:05.591][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:04:05.592][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:05.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:05.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:05.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:05.596][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:05.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:05.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:05.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:05.599][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:05.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:05.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:05.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:04:05.603][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-06-28 16:04:05.604][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:04:05.605][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:04:05.606][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:04:05.610][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:04:05.611][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:04:05.611][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:04:05.612][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:04:05.613][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:05.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:05.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:05.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:05.617][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:05.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:05.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:05.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:05.620][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:04:05.621][private$selectFields]
biodb.TRACE[2025-06-28 16:04:05.622][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-06-28 16:04:05.623][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-06-28 16:04:05.624][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:04:05.625][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:05.626][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:05.627][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:05.627][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:05.628][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:05.629][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:05.630][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:05.631][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:05.632][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:04:05.633][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:04:05.634][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:05.635][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:05.635][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:05.636][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:05.637][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-06-28 16:04:05.638][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:05.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:05.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:05.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:05.642][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:05.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:05.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:05.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:05.645][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:05.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:05.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:05.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:05.649][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4781].
biodb.DEBUG[2025-06-28 16:04:05.650][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:04:05.651][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:04:05.652][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:04:05.656][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:04:05.657][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:04:05.657][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:04:05.658][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:04:05.659][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:05.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:05.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:05.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:05.666][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:05.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:05.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:05.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:05.670][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:04:05.671][private$selectFields]
biodb.TRACE[2025-06-28 16:04:05.672][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-06-28 16:04:05.672][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-06-28 16:04:05.673][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:04:05.674][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:05.675][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:05.676][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:05.677][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:05.678][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:05.679][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:05.679][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:05.680][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:05.681][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:04:05.682][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:04:05.683][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:05.684][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:05.685][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:05.685][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:05.686][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-06-28 16:04:05.687][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:05.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:05.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:05.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:05.691][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:05.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:05.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:05.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:05.694][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:05.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:05.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:05.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:05.698][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [91601].
biodb.DEBUG[2025-06-28 16:04:05.699][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:04:05.700][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:04:05.701][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:04:05.704][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:04:05.705][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:04:05.706][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:04:05.707][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:04:05.708][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:05.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:05.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:05.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:05.711][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:05.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:05.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:05.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:05.715][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:04:05.716][private$selectFields]
biodb.TRACE[2025-06-28 16:04:05.717][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-06-28 16:04:05.717][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-06-28 16:04:05.718][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:04:05.719][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:05.720][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:05.721][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:05.722][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:05.723][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:05.724][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:05.725][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:05.725][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:05.726][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:04:05.727][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:04:05.728][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:05.729][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:05.730][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:05.731][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:05.731][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-06-28 16:04:05.732][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:05.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:05.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:05.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:05.736][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:05.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:05.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:05.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:05.739][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:05.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:05.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:05.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:05.743][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [95147].
biodb.DEBUG[2025-06-28 16:04:05.744][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-06-28 16:04:05.745][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-06-28 16:04:05.747][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:04:05.748][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:04:05.748][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:04:05.752][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:04:05.753][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:04:05.754][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:04:05.755][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-06-28 16:04:05.757][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.1*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-06-28 16:04:05.759][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-06-28 16:04:05.765][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/10aed56c10c2ef392c152ae3e17290c4.content.
sched.DEBUG[2025-06-28 16:04:05.766][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-06-28 16:04:05.772][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:04:05.772][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:04:05.773][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:04:05.777][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:04:05.778][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:04:05.779][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:04:05.780][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:04:05.781][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:05.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:05.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:05.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:05.784][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:05.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:05.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:05.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:05.788][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:05.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:05.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:05.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:04:05.791][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:04:05.792][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:04:05.793][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:04:05.797][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:04:05.798][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:04:05.799][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:04:05.799][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:04:05.800][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:05.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:05.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:05.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:05.804][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:05.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:05.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:05.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:05.807][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:05.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:05.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:05.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:04:05.811][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:04:05.812][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:04:05.813][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:04:05.817][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:04:05.818][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:04:05.818][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:04:05.819][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:04:05.820][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:05.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:05.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:05.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:05.824][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:05.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:05.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:05.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:05.827][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:05.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:05.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:05.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:04:05.831][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:04:05.832][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:04:05.833][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:04:05.837][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:04:05.837][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:04:05.838][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:04:05.839][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:04:05.840][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:05.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:05.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:05.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:05.844][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:05.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:05.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:05.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:05.847][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:05.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:05.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:05.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:04:05.851][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-06-28 16:04:05.852][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:04:05.853][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:04:05.854][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:04:05.858][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:04:05.859][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:04:05.860][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:04:05.860][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:04:05.862][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:05.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:05.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:05.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:05.865][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:05.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:05.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:05.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:05.869][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:04:05.870][private$selectFields]
biodb.TRACE[2025-06-28 16:04:05.870][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-06-28 16:04:05.871][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-06-28 16:04:05.872][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:04:05.873][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:05.874][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:05.875][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:05.876][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:05.877][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:05.878][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:05.878][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:05.879][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:05.880][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:04:05.881][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:04:05.882][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:05.883][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:05.884][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:05.885][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:05.886][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-06-28 16:04:05.887][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:05.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:05.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:05.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:05.890][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:05.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:05.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:05.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:05.894][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:05.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:05.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:05.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:05.898][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [636].
biodb.DEBUG[2025-06-28 16:04:05.899][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:04:05.900][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:04:05.900][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:04:05.904][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:04:05.905][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:04:05.906][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:04:05.907][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:04:05.908][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:05.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:05.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:05.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:05.916][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:05.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:05.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:05.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:05.920][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:04:05.920][private$selectFields]
biodb.TRACE[2025-06-28 16:04:05.921][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-06-28 16:04:05.922][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-06-28 16:04:05.923][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:04:05.924][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:05.925][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:05.926][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:05.926][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:05.927][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:05.928][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:05.929][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:05.930][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:05.931][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:04:05.932][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:04:05.933][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:05.934][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:05.935][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:05.935][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:05.936][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-06-28 16:04:05.937][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:05.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:05.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:05.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:05.941][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:05.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:05.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:05.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:05.944][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:05.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:05.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:05.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:05.948][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [3014].
biodb.DEBUG[2025-06-28 16:04:05.949][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:04:05.950][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:04:05.951][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:04:05.955][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:04:05.956][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:04:05.957][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:04:05.958][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:04:05.959][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:05.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:05.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:05.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:05.962][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:05.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:05.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:05.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:05.966][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:04:05.967][private$selectFields]
biodb.TRACE[2025-06-28 16:04:05.968][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-06-28 16:04:05.968][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-06-28 16:04:05.969][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:04:05.970][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:05.971][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:05.972][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:05.973][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:05.974][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:05.975][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:05.976][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:05.976][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:05.977][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:04:05.978][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2025-06-28 16:04:05.979][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:05.980][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:05.981][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:05.982][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:05.983][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2025-06-28 16:04:05.984][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:05.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:05.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:05.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:05.987][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:05.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:05.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:05.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:05.991][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:05.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:05.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:05.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:05.995][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [7799].
biodb.DEBUG[2025-06-28 16:04:05.996][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-06-28 16:04:05.996][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2025-06-28 16:04:06.011][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2025-06-28 16:04:06.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2025-06-28 16:04:06.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:06.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:06.015][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2025-06-28 16:04:06.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2025-06-28 16:04:06.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:06.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:06.018][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2025-06-28 16:04:06.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2025-06-28 16:04:06.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:06.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2025-06-28 16:04:06.025][biodb::testThat]
biodb.INFO [2025-06-28 16:04:06.025][biodb::testThat] Running test function test_annotateMzValues_additional_fields (" Additional fields are accepted in annotateMzValues() ").
biodb.INFO [2025-06-28 16:04:06.026][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-06-28 16:04:06.027][biodb::testThat]
biodb.TRACE[2025-06-28 16:04:06.030][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-06-28 16:04:06.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-06-28 16:04:06.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:06.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:06.033][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-06-28 16:04:06.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-06-28 16:04:06.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:06.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:06.037][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-06-28 16:04:06.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-06-28 16:04:06.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:06.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:06.040][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:06.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:06.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:06.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:06.044][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:06.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:06.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:06.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:06.048][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:06.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:06.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:06.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:06.051][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:06.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:06.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:06.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:06.055][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:06.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:06.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:06.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:06.059][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:06.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:06.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:06.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:06.062][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:06.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:06.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:06.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:06.066][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:06.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:06.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:06.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:06.069][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:06.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:06.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:06.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:06.073][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:06.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:06.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:06.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:06.077][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:06.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:06.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:06.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:06.080][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:06.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:06.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:06.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:04:06.086][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:04:06.087][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:04:06.088][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:04:06.092][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:04:06.093][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:04:06.094][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:04:06.094][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-06-28 16:04:06.097][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-06-28 16:04:06.099][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-06-28 16:04:06.101][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/8fc54eee7e982ce554bee8000d8203f7.content.
sched.DEBUG[2025-06-28 16:04:06.102][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-06-28 16:04:06.104][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:04:06.105][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:04:06.106][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:04:06.110][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:04:06.110][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:04:06.111][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:04:06.112][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:04:06.113][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:06.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:06.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:06.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:06.117][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:06.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:06.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:06.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:06.120][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:06.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:06.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:06.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
sched.DEBUG[2025-06-28 16:04:06.124][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-06-28 16:04:06.127][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-06-28 16:04:06.129][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/6def615835d7c1dfccd5a5f135bd2f9d.content.
sched.DEBUG[2025-06-28 16:04:06.130][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-06-28 16:04:06.132][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:04:06.132][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:04:06.133][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:04:06.137][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:04:06.138][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:04:06.139][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:04:06.140][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:04:06.141][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:06.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:06.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:06.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:06.144][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:06.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:06.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:06.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:06.148][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:06.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:06.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:06.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:04:06.152][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:04:06.153][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:04:06.153][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:04:06.157][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:04:06.158][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:04:06.159][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:04:06.160][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:04:06.165][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:06.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:06.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:06.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:06.168][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:06.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:06.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:06.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:06.172][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:06.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:06.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:06.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:04:06.176][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-06-28 16:04:06.177][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:04:06.178][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:04:06.179][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:04:06.183][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:04:06.183][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:04:06.184][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:04:06.185][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:04:06.186][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:04:06.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:04:06.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:06.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:06.190][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:04:06.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:04:06.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:06.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:06.193][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:04:06.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:04:06.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:06.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:06.197][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:04:06.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:04:06.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:06.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:06.200][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:06.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:06.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:06.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:06.204][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:06.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:06.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:06.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:06.208][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:04:06.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:04:06.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:06.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:06.211][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:04:06.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:04:06.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:06.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:06.215][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:04:06.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:04:06.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:06.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:06.218][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:04:06.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:04:06.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:06.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:06.222][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:04:06.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:04:06.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:06.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:06.226][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:04:06.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:04:06.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:06.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:06.229][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:06.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:06.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:06.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:06.233][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:06.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:06.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:06.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:06.237][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:06.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:06.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:06.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:06.240][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:06.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:06.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:06.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:06.244][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:06.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:06.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:06.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:06.247][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:06.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:06.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:06.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:06.251][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-06-28 16:04:06.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:04:06.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:06.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:06.255][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-06-28 16:04:06.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:04:06.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:06.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:06.258][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:04:06.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:04:06.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:06.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:06.262][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:04:06.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:04:06.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:06.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:06.265][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:04:06.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:04:06.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:06.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:06.269][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:04:06.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:04:06.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:06.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:06.273][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-06-28 16:04:06.274][private$selectFields]
biodb.TRACE[2025-06-28 16:04:06.274][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-06-28 16:04:06.275][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-06-28 16:04:06.276][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-06-28 16:04:06.277][ef$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:04:06.278][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:04:06.279][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:06.280][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:06.281][ef$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:04:06.282][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:04:06.283][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:06.284][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:06.284][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:06.285][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:06.286][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:06.287][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:06.288][ef$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:04:06.289][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:04:06.290][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:06.291][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:06.292][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:04:06.293][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:04:06.293][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:06.294][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:06.295][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:04:06.296][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:04:06.297][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:06.298][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:06.299][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:06.300][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:06.301][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:06.301][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:06.302][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:06.303][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:06.304][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:06.305][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:06.306][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:06.307][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:06.308][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:06.309][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:06.310][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-06-28 16:04:06.311][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:04:06.312][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:06.312][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:06.313][ef$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:04:06.314][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:04:06.315][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:06.316][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:06.317][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:04:06.318][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:04:06.319][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:06.320][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:06.321][ef$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:04:06.322][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:04:06.322][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:06.323][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:06.324][ef$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:04:06.325][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:04:06.326][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:06.327][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:06.328][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:06.329][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:06.330][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:06.331][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:06.331][ef$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:04:06.332][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:04:06.333][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:06.334][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:06.335][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:04:06.336][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:04:06.337][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:06.338][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:06.339][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:04:06.340][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:04:06.341][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:06.341][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:06.342][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:06.343][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:06.344][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:06.345][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:06.346][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:06.347][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:06.348][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:06.349][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:06.350][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:06.350][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:06.351][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:06.352][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:06.353][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-06-28 16:04:06.354][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:04:06.355][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:06.356][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:06.357][ef$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:04:06.358][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:04:06.359][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:06.359][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:06.360][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:04:06.361][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:04:06.362][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:06.363][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:06.364][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-06-28 16:04:06.365][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-06-28 16:04:06.366][ef$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:04:06.367][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:04:06.368][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:06.369][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:06.369][ef$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:04:06.370][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:04:06.371][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:06.372][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:06.373][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:06.374][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:06.375][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:06.376][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:06.377][ef$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:04:06.378][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:04:06.379][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:06.379][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:06.380][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:04:06.381][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:04:06.382][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:06.383][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:06.384][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:04:06.385][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:04:06.386][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:06.387][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:06.387][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:06.388][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:06.389][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:06.390][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:06.391][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:06.392][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:06.393][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:06.394][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:06.395][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-06-28 16:04:06.396][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:04:06.397][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:06.397][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:06.398][ef$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:04:06.399][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:04:06.400][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:06.401][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:06.402][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:04:06.403][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:04:06.404][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:06.405][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:06.406][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-06-28 16:04:06.406][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:04:06.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:04:06.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:06.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:06.414][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:04:06.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:04:06.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:06.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:06.417][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:04:06.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:04:06.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:06.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:06.421][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:04:06.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:04:06.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:06.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:06.425][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:04:06.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:04:06.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:06.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:06.428][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:04:06.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:04:06.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:06.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:06.432][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:06.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:06.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:06.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:06.436][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:06.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:06.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:06.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:06.439][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:06.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:06.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:06.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:06.443][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:04:06.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:04:06.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:06.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:06.447][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:04:06.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:04:06.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:06.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:06.450][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:04:06.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:04:06.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:06.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:06.454][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:04:06.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:04:06.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:06.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:06.457][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:04:06.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:04:06.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:06.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:06.461][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:04:06.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:04:06.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:06.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:06.465][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:04:06.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:04:06.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:06.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:06.468][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:04:06.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:04:06.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:06.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:06.472][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:04:06.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:04:06.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:06.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:06.476][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:06.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:06.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:06.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:06.479][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:06.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:06.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:06.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:06.483][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:06.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:06.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:06.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:06.487][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:06.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:06.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:06.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:06.490][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:06.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:06.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:06.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:06.494][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:06.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:06.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:06.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:06.498][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-06-28 16:04:06.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:04:06.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:06.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:06.501][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-06-28 16:04:06.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:04:06.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:06.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:06.505][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-06-28 16:04:06.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:04:06.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:06.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:06.508][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:04:06.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:04:06.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:06.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:06.512][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:04:06.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:04:06.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:06.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:06.516][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:04:06.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:04:06.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:06.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:06.519][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:04:06.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:04:06.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:06.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:06.523][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:04:06.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:04:06.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:06.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:06.527][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:04:06.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:04:06.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:06.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:06.537][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [192288, 0, 192288, C27H54O2, InChI=1S/C27H54O2/c1-3-4-5-6-7-8-9-10-11-12-13-14-15-16-17-18-19-20-21-22-23-24-25-26-27(28)29-2/h3-26H2,1-2H3, ...].
biodb.DEBUG[2025-06-28 16:04:06.538][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:04:06.539][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:04:06.540][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:04:06.544][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:04:06.545][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:04:06.545][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:04:06.546][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:04:06.547][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:04:06.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:04:06.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:06.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:06.551][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:04:06.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:04:06.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:06.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:06.554][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:04:06.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:04:06.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:06.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:06.558][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:04:06.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:04:06.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:06.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:06.562][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:06.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:06.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:06.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:06.565][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:06.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:06.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:06.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:06.569][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:04:06.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:04:06.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:06.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:06.572][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:04:06.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:04:06.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:06.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:06.576][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:04:06.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:04:06.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:06.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:06.580][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:04:06.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:04:06.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:06.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:06.583][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:04:06.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:04:06.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:06.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:06.587][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:04:06.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:04:06.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:06.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:06.591][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:06.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:06.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:06.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:06.594][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:06.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:06.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:06.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:06.598][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:06.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:06.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:06.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:06.601][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:06.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:06.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:06.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:06.605][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:06.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:06.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:06.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:06.609][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:06.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:06.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:06.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:06.612][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-06-28 16:04:06.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:04:06.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:06.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:06.616][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-06-28 16:04:06.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:04:06.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:06.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:06.619][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:04:06.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:04:06.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:06.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:06.623][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:04:06.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:04:06.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:06.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:06.627][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:04:06.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:04:06.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:06.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:06.630][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:04:06.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:04:06.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:06.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:06.634][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-06-28 16:04:06.635][private$selectFields]
biodb.TRACE[2025-06-28 16:04:06.635][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-06-28 16:04:06.636][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-06-28 16:04:06.637][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-06-28 16:04:06.638][ef$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:04:06.639][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:04:06.640][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:06.641][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:06.642][ef$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:04:06.643][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:04:06.643][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:06.644][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:06.645][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:06.646][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:06.647][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:06.648][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:06.649][ef$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:04:06.650][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:04:06.651][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:06.651][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:06.652][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:04:06.653][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:04:06.658][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:06.659][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:06.659][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:04:06.660][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:04:06.661][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:06.662][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:06.663][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:06.664][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:06.665][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:06.666][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:06.666][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:06.667][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:06.668][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:06.669][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:06.670][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:06.671][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:06.672][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:06.673][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:06.673][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-06-28 16:04:06.674][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:04:06.675][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:06.676][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:06.677][ef$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:04:06.678][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:04:06.679][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:06.680][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:06.680][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:04:06.681][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:04:06.682][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:06.683][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:06.684][ef$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:04:06.685][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:04:06.686][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:06.687][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:06.687][ef$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:04:06.688][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:04:06.689][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:06.690][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:06.691][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:06.692][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:06.693][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:06.694][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:06.694][ef$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:04:06.695][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:04:06.696][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:06.697][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:06.698][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:04:06.699][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:04:06.700][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:06.701][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:06.701][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:04:06.702][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:04:06.703][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:06.704][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:06.705][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:06.706][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:06.707][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:06.708][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:06.708][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:06.709][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:06.710][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:06.711][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:06.712][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:06.713][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:06.714][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:06.715][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:06.716][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-06-28 16:04:06.716][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:04:06.717][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:06.718][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:06.719][ef$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:04:06.720][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:04:06.721][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:06.722][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:06.723][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:04:06.723][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:04:06.724][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:06.725][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:06.726][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-06-28 16:04:06.727][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-06-28 16:04:06.728][ef$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:04:06.729][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:04:06.730][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:06.731][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:06.731][ef$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:04:06.732][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:04:06.733][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:06.734][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:06.735][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:06.736][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:06.737][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:06.738][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:06.738][ef$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:04:06.739][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:04:06.740][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:06.741][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:06.742][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:04:06.743][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:04:06.744][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:06.745][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:06.746][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:04:06.746][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:04:06.747][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:06.748][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:06.749][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:06.750][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:06.751][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:06.752][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:06.753][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:06.753][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:06.754][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:06.755][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:06.756][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:06.757][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:06.758][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:06.759][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:06.760][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-06-28 16:04:06.761][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:04:06.761][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:06.762][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:06.763][ef$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:04:06.764][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:04:06.765][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:06.766][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:06.767][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:04:06.768][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:04:06.768][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:06.769][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:06.770][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-06-28 16:04:06.771][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:04:06.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:04:06.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:06.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:06.775][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:04:06.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:04:06.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:06.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:06.778][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:04:06.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:04:06.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:06.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:06.782][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:04:06.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:04:06.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:06.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:06.786][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:04:06.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:04:06.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:06.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:06.789][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:04:06.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:04:06.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:06.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:06.793][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:06.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:06.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:06.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:06.796][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:06.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:06.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:06.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:06.800][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:06.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:06.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:06.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:06.804][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:04:06.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:04:06.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:06.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:06.807][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:04:06.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:04:06.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:06.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:06.811][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:04:06.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:04:06.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:06.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:06.815][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:04:06.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:04:06.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:06.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:06.818][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:04:06.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:04:06.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:06.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:06.822][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:04:06.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:04:06.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:06.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:06.826][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:04:06.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:04:06.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:06.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:06.829][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:04:06.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:04:06.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:06.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:06.833][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:04:06.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:04:06.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:06.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:06.837][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:06.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:06.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:06.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:06.840][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:06.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:06.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:06.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:06.844][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:06.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:06.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:06.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:06.847][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:06.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:06.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:06.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:06.851][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:06.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:06.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:06.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:06.855][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:06.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:06.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:06.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:06.858][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:06.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:06.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:06.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:06.862][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:06.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:06.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:06.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:06.866][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:06.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:06.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:06.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:06.869][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-06-28 16:04:06.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:04:06.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:06.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:06.873][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-06-28 16:04:06.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:04:06.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:06.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:06.876][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-06-28 16:04:06.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:04:06.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:06.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:06.880][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:04:06.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:04:06.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:06.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:06.884][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:04:06.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:04:06.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:06.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:06.887][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:04:06.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:04:06.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:06.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:06.891][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:04:06.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:04:06.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:06.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:06.895][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:04:06.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:04:06.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:06.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:06.902][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:04:06.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:04:06.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:06.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:06.911][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [15440, 0, 15440, C30H50, InChI=1S/C30H50/c1-25(2)15-11-19-29(7)23-13-21-27(5)17-9-10-18-28(6)22-14-24-30(8)20-12-16-26(3)4/h15-18,23-24H,9-14,19-22H2,1-8H3/b27-17+,28-18+,29-23+,30-24+, ...].
biodb.DEBUG[2025-06-28 16:04:06.912][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:04:06.913][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:04:06.913][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:04:06.918][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:04:06.918][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:04:06.919][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:04:06.920][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:04:06.921][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:04:06.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:04:06.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:06.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:06.924][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:04:06.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:04:06.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:06.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:06.928][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:04:06.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:04:06.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:06.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:06.932][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:04:06.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:04:06.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:06.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:06.935][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:06.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:06.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:06.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:06.939][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:06.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:06.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:06.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:06.942][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:04:06.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:04:06.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:06.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:06.946][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:04:06.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:04:06.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:06.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:06.949][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:04:06.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:04:06.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:06.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:06.953][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:04:06.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:04:06.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:06.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:06.956][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:04:06.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:04:06.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:06.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:06.960][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:04:06.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:04:06.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:06.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:06.963][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:06.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:06.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:06.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:06.967][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:06.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:06.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:06.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:06.970][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:06.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:06.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:06.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:06.974][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:06.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:06.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:06.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:06.977][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:06.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:06.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:06.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:06.981][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:06.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:06.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:06.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:06.985][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-06-28 16:04:06.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:04:06.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:06.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:06.988][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-06-28 16:04:06.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:04:06.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:06.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:06.992][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:04:06.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:04:06.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:06.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:06.995][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:04:06.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:04:06.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:06.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:06.999][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:04:07.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:04:07.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:07.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:07.002][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:04:07.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:04:07.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:07.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:07.006][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-06-28 16:04:07.007][private$selectFields]
biodb.TRACE[2025-06-28 16:04:07.007][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-06-28 16:04:07.008][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-06-28 16:04:07.009][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-06-28 16:04:07.010][ef$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:04:07.011][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:04:07.012][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:07.013][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:07.014][ef$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:04:07.014][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:04:07.015][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:07.016][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:07.017][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:07.018][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:07.019][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:07.020][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:07.021][ef$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:04:07.021][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:04:07.022][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:07.023][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:07.024][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:04:07.025][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:04:07.026][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:07.027][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:07.028][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:04:07.028][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:04:07.029][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:07.030][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:07.031][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:07.032][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:07.033][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:07.034][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:07.035][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:07.036][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:07.036][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:07.037][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:07.038][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:07.039][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:07.040][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:07.041][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:07.042][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-06-28 16:04:07.043][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:04:07.044][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:07.044][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:07.045][ef$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:04:07.046][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:04:07.047][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:07.048][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:07.049][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:04:07.050][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:04:07.051][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:07.052][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:07.052][ef$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:04:07.053][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:04:07.054][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:07.055][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:07.056][ef$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:04:07.057][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:04:07.058][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:07.059][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:07.059][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:07.060][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:07.061][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:07.062][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:07.063][ef$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:04:07.064][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:04:07.065][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:07.066][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:07.067][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:04:07.068][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:04:07.068][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:07.069][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:07.070][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:04:07.071][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:04:07.072][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:07.073][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:07.074][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:07.075][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:07.075][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:07.076][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:07.077][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:07.078][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:07.079][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:07.080][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:07.081][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:07.082][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:07.083][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:07.083][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:07.084][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-06-28 16:04:07.085][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:04:07.086][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:07.087][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:07.088][ef$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:04:07.089][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:04:07.090][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:07.090][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:07.091][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:04:07.092][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:04:07.093][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:07.094][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:07.095][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-06-28 16:04:07.096][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-06-28 16:04:07.097][ef$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:04:07.098][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:04:07.098][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:07.099][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:07.100][ef$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:04:07.101][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:04:07.102][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:07.103][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:07.104][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:07.105][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:07.106][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:07.106][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:07.107][ef$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:04:07.108][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:04:07.109][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:07.110][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:07.111][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:04:07.112][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:04:07.113][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:07.113][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:07.114][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:04:07.115][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:04:07.116][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:07.117][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:07.118][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:07.119][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:07.120][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:07.121][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:07.121][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:07.122][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:07.123][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:07.124][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:07.125][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-06-28 16:04:07.126][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:04:07.127][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:07.128][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:07.128][ef$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:04:07.129][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:04:07.130][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:07.131][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:07.132][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:04:07.133][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:04:07.134][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:07.135][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:07.136][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-06-28 16:04:07.140][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:04:07.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:04:07.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:07.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:07.144][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:04:07.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:04:07.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:07.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:07.147][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:04:07.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:04:07.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:07.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:07.151][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:04:07.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:04:07.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:07.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:07.154][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:04:07.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:04:07.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:07.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:07.158][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:04:07.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:04:07.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:07.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:07.161][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:07.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:07.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:07.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:07.165][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:07.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:07.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:07.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:07.168][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:07.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:07.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:07.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:07.172][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:04:07.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:04:07.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:07.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:07.176][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:04:07.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:04:07.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:07.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:07.179][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:04:07.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:04:07.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:07.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:07.183][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:04:07.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:04:07.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:07.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:07.186][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:04:07.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:04:07.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:07.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:07.190][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:04:07.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:04:07.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:07.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:07.193][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:04:07.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:04:07.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:07.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:07.197][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:04:07.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:04:07.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:07.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:07.201][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:04:07.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:04:07.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:07.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:07.204][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:07.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:07.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:07.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:07.208][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:07.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:07.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:07.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:07.211][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:07.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:07.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:07.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:07.215][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:07.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:07.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:07.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:07.219][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:07.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:07.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:07.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:07.222][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:07.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:07.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:07.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:07.226][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-06-28 16:04:07.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:04:07.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:07.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:07.229][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-06-28 16:04:07.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:04:07.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:07.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:07.233][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-06-28 16:04:07.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:04:07.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:07.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:07.237][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:04:07.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:04:07.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:07.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:07.240][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:04:07.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:04:07.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:07.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:07.244][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:04:07.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:04:07.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:07.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:07.247][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:04:07.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:04:07.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:07.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:07.251][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:04:07.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:04:07.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:07.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:07.255][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:04:07.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:04:07.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:07.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:07.263][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [209892, 0, 209892, C30H50, InChI=1S/C30H50/c1-21(2)11-9-12-22(3)23-15-19-30(8)25-13-14-26-27(4,5)17-10-18-28(26,6)24(25)16-20-29(23,30)7/h11,13,22-24,26H,9-10,12,14-20H2,1-8H3/t22-,23+,24+,26+,28-,29+,30-/m1/s1, ...].
biodb.DEBUG[2025-06-28 16:04:07.264][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-06-28 16:04:07.265][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-06-28 16:04:07.268][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:04:07.269][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:04:07.269][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:04:07.274][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:04:07.274][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:04:07.275][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:04:07.276][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-06-28 16:04:07.279][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-06-28 16:04:07.281][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-06-28 16:04:07.283][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/013adb879cee6d4257067df9ba0a8c7b.content.
sched.DEBUG[2025-06-28 16:04:07.284][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-06-28 16:04:07.286][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:04:07.287][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:04:07.288][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:04:07.292][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:04:07.292][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:04:07.293][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:04:07.294][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:04:07.295][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:07.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:07.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:07.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:07.299][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:07.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:07.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:07.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:07.302][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:07.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:07.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:07.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:04:07.306][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:04:07.307][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:04:07.308][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:04:07.312][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:04:07.312][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:04:07.313][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:04:07.314][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:04:07.315][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:07.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:07.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:07.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:07.319][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:07.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:07.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:07.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:07.322][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:07.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:07.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:07.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
sched.DEBUG[2025-06-28 16:04:07.327][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.63*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-06-28 16:04:07.329][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-06-28 16:04:07.332][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/d37a10a1f6afae785eb4d1943c254641.content.
sched.DEBUG[2025-06-28 16:04:07.333][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-06-28 16:04:07.335][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:04:07.336][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:04:07.337][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:04:07.341][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:04:07.342][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:04:07.342][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:04:07.343][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:04:07.344][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:07.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:07.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:07.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:07.348][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:07.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:07.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:07.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:07.352][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:07.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:07.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:07.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:04:07.355][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:04:07.356][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:04:07.357][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:04:07.361][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:04:07.362][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:04:07.363][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:04:07.363][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:04:07.364][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:07.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:07.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:07.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:07.368][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:07.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:07.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:07.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:07.372][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:07.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:07.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:07.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:04:07.375][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:04:07.376][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:04:07.377][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:04:07.381][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:04:07.386][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:04:07.386][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:04:07.387][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:04:07.388][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:07.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:07.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:07.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:07.392][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:07.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:07.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:07.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:07.395][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:07.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:07.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:07.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:04:07.399][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-06-28 16:04:07.401][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:04:07.401][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:04:07.402][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:04:07.406][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:04:07.407][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:04:07.408][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:04:07.409][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:04:07.410][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:04:07.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:04:07.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:07.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:07.413][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:04:07.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:04:07.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:07.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:07.417][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:04:07.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:04:07.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:07.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:07.420][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:04:07.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:04:07.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:07.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:07.424][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:07.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:07.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:07.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:07.427][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:07.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:07.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:07.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:07.431][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:04:07.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:04:07.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:07.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:07.434][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:04:07.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:04:07.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:07.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:07.438][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:04:07.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:04:07.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:07.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:07.442][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:04:07.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:04:07.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:07.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:07.445][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:04:07.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:04:07.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:07.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:07.449][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:04:07.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:04:07.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:07.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:07.452][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:07.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:07.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:07.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:07.456][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:07.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:07.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:07.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:07.459][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:07.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:07.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:07.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:07.463][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:07.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:07.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:07.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:07.466][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:07.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:07.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:07.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:07.470][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:07.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:07.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:07.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:07.474][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-06-28 16:04:07.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:04:07.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:07.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:07.477][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-06-28 16:04:07.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:04:07.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:07.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:07.481][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:04:07.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:04:07.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:07.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:07.484][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:04:07.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:04:07.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:07.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:07.488][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:04:07.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:04:07.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:07.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:07.491][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:04:07.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:04:07.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:07.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:07.495][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-06-28 16:04:07.496][private$selectFields]
biodb.TRACE[2025-06-28 16:04:07.497][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-06-28 16:04:07.497][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-06-28 16:04:07.498][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-06-28 16:04:07.499][ef$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:04:07.500][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:04:07.501][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:07.502][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:07.503][ef$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:04:07.504][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:04:07.505][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:07.505][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:07.506][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:07.507][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:07.508][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:07.509][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:07.510][ef$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:04:07.511][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:04:07.512][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:07.512][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:07.513][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:04:07.514][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:04:07.515][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:07.516][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:07.517][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:04:07.518][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:04:07.519][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:07.520][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:07.520][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:07.521][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:07.522][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:07.523][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:07.524][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:07.525][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:07.526][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:07.527][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:07.528][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:07.529][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:07.529][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:07.530][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:07.531][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-06-28 16:04:07.532][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:04:07.533][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:07.534][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:07.535][ef$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:04:07.536][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:04:07.537][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:07.537][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:07.538][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:04:07.539][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:04:07.540][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:07.541][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:07.542][ef$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:04:07.543][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:04:07.544][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:07.545][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:07.545][ef$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:04:07.546][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:04:07.547][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:07.548][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:07.549][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:07.550][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:07.551][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:07.552][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:07.553][ef$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:04:07.554][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:04:07.554][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:07.555][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:07.556][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:04:07.557][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:04:07.558][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:07.559][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:07.560][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:04:07.561][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:04:07.561][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:07.562][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:07.563][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:07.564][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:07.565][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:07.566][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:07.567][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:07.568][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:07.569][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:07.569][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:07.570][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:07.571][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:07.572][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:07.573][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:07.574][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-06-28 16:04:07.575][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:04:07.576][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:07.577][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:07.577][ef$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:04:07.578][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:04:07.579][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:07.580][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:07.581][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:04:07.582][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:04:07.583][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:07.584][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:07.585][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-06-28 16:04:07.586][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-06-28 16:04:07.586][ef$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:04:07.587][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:04:07.588][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:07.589][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:07.590][ef$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:04:07.591][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:04:07.592][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:07.593][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:07.594][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:07.595][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:07.595][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:07.596][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:07.597][ef$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:04:07.598][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:04:07.599][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:07.600][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:07.601][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:04:07.602][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:04:07.603][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:07.603][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:07.604][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:04:07.605][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:04:07.606][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:07.607][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:07.608][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:07.609][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:07.610][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:07.611][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:07.611][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:07.612][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:07.613][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:07.614][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:07.615][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:07.616][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:07.617][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:07.618][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:07.619][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-06-28 16:04:07.620][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:04:07.620][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:07.621][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:07.622][ef$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:04:07.623][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:04:07.624][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:07.629][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:07.630][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:04:07.631][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:04:07.631][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:07.632][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:07.633][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-06-28 16:04:07.634][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:04:07.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:04:07.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:07.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:07.638][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:04:07.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:04:07.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:07.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:07.641][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:04:07.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:04:07.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:07.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:07.645][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:04:07.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:04:07.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:07.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:07.649][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:04:07.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:04:07.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:07.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:07.652][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:04:07.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:04:07.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:07.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:07.656][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:07.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:07.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:07.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:07.659][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:07.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:07.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:07.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:07.663][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:07.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:07.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:07.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:07.667][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:04:07.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:04:07.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:07.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:07.670][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:04:07.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:04:07.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:07.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:07.674][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:04:07.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:04:07.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:07.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:07.678][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:04:07.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:04:07.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:07.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:07.681][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:04:07.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:04:07.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:07.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:07.685][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:04:07.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:04:07.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:07.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:07.688][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:04:07.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:04:07.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:07.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:07.692][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:04:07.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:04:07.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:07.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:07.696][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:04:07.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:04:07.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:07.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:07.699][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:07.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:07.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:07.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:07.703][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:07.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:07.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:07.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:07.707][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:07.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:07.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:07.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:07.710][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:07.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:07.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:07.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:07.714][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:07.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:07.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:07.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:07.717][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:07.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:07.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:07.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:07.721][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:07.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:07.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:07.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:07.725][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:07.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:07.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:07.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:07.728][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:07.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:07.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:07.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:07.732][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-06-28 16:04:07.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:04:07.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:07.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:07.736][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-06-28 16:04:07.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:04:07.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:07.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:07.739][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-06-28 16:04:07.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:04:07.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:07.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:07.743][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:04:07.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:04:07.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:07.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:07.747][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:04:07.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:04:07.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:07.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:07.750][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:04:07.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:04:07.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:07.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:07.754][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:04:07.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:04:07.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:07.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:07.758][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:04:07.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:04:07.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:07.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:07.761][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:04:07.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:04:07.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:07.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:07.770][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [4781, 0, 4781, C29H40N2O4, InChI=1S/C29H40N2O4/c1-6-18-17-31-10-8-20-14-27(33-3)29(35-5)16-23(20)25(31)12-21(18)11-24-22-15-28(34-4)26(32-2)13-19(22)7-9-30-24/h13-16,18,21,24-25,30H,6-12,17H2,1-5H3/t18-,21-,24+,25-/m0/s1, ...].
biodb.DEBUG[2025-06-28 16:04:07.771][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:04:07.772][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:04:07.773][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:04:07.777][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:04:07.778][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:04:07.779][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:04:07.780][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:04:07.781][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:04:07.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:04:07.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:07.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:07.785][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:04:07.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:04:07.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:07.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:07.788][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:04:07.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:04:07.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:07.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:07.792][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:04:07.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:04:07.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:07.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:07.795][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:07.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:07.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:07.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:07.799][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:07.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:07.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:07.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:07.803][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:04:07.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:04:07.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:07.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:07.806][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:04:07.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:04:07.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:07.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:07.810][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:04:07.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:04:07.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:07.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:07.814][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:04:07.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:04:07.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:07.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:07.817][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:04:07.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:04:07.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:07.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:07.821][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:04:07.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:04:07.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:07.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:07.824][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:07.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:07.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:07.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:07.828][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:07.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:07.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:07.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:07.832][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:07.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:07.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:07.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:07.835][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:07.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:07.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:07.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:07.839][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:07.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:07.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:07.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:07.842][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:07.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:07.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:07.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:07.846][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-06-28 16:04:07.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:04:07.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:07.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:07.850][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-06-28 16:04:07.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:04:07.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:07.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:07.853][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:04:07.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:04:07.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:07.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:07.857][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:04:07.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:04:07.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:07.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:07.860][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:04:07.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:04:07.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:07.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:07.864][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:04:07.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:04:07.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:07.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:07.867][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-06-28 16:04:07.872][private$selectFields]
biodb.TRACE[2025-06-28 16:04:07.873][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-06-28 16:04:07.874][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-06-28 16:04:07.875][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-06-28 16:04:07.875][ef$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:04:07.876][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:04:07.877][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:07.878][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:07.879][ef$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:04:07.880][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:04:07.881][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:07.882][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:07.882][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:07.883][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:07.884][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:07.885][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:07.886][ef$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:04:07.887][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:04:07.888][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:07.889][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:07.889][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:04:07.890][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:04:07.891][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:07.892][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:07.893][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:04:07.894][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:04:07.895][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:07.896][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:07.896][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:07.897][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:07.898][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:07.899][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:07.900][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:07.901][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:07.902][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:07.903][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:07.903][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:07.904][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:07.905][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:07.906][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:07.907][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-06-28 16:04:07.908][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:04:07.909][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:07.909][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:07.910][ef$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:04:07.911][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:04:07.912][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:07.913][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:07.914][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:04:07.915][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:04:07.916][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:07.916][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:07.917][ef$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:04:07.918][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:04:07.919][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:07.920][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:07.921][ef$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:04:07.922][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:04:07.923][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:07.923][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:07.924][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:07.925][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:07.926][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:07.927][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:07.928][ef$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:04:07.929][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:04:07.930][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:07.930][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:07.931][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:04:07.932][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:04:07.933][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:07.934][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:07.935][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:04:07.936][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:04:07.937][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:07.937][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:07.938][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:07.939][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:07.940][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:07.941][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:07.942][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:07.943][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:07.944][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:07.944][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:07.945][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:07.946][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:07.947][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:07.948][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:07.949][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-06-28 16:04:07.950][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:04:07.951][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:07.951][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:07.952][ef$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:04:07.953][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:04:07.954][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:07.955][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:07.956][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:04:07.957][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:04:07.958][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:07.958][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:07.959][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-06-28 16:04:07.960][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-06-28 16:04:07.961][ef$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:04:07.962][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:04:07.963][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:07.964][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:07.965][ef$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:04:07.966][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:04:07.966][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:07.967][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:07.968][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:07.969][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:07.970][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:07.971][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:07.972][ef$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:04:07.973][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:04:07.973][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:07.974][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:07.975][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:04:07.976][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:04:07.977][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:07.978][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:07.979][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:04:07.980][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:04:07.980][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:07.981][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:07.982][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:07.983][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:07.984][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:07.985][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:07.986][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:07.987][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:07.987][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:07.988][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:07.989][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:07.990][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:07.991][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:07.992][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:07.993][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-06-28 16:04:07.994][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:04:07.994][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:07.995][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:07.996][ef$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:04:07.997][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:04:07.998][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:07.999][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:08.000][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:04:08.000][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:04:08.001][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:08.002][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:08.003][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-06-28 16:04:08.004][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:04:08.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:04:08.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:08.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:08.008][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:04:08.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:04:08.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:08.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:08.011][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:04:08.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:04:08.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:08.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:08.015][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:04:08.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:04:08.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:08.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:08.019][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:04:08.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:04:08.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:08.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:08.022][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:04:08.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:04:08.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:08.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:08.026][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:08.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:08.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:08.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:08.030][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:08.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:08.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:08.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:08.033][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:08.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:08.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:08.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:08.037][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:04:08.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:04:08.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:08.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:08.040][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:04:08.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:04:08.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:08.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:08.044][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:04:08.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:04:08.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:08.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:08.048][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:04:08.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:04:08.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:08.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:08.051][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:04:08.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:04:08.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:08.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:08.055][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:04:08.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:04:08.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:08.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:08.059][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:04:08.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:04:08.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:08.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:08.062][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:04:08.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:04:08.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:08.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:08.066][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:04:08.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:04:08.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:08.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:08.070][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:08.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:08.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:08.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:08.073][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:08.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:08.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:08.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:08.077][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:08.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:08.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:08.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:08.080][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:08.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:08.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:08.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:08.084][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:08.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:08.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:08.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:08.088][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:08.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:08.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:08.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:08.091][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:08.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:08.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:08.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:08.095][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:08.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:08.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:08.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:08.099][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:08.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:08.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:08.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:08.102][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-06-28 16:04:08.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:04:08.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:08.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:08.106][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-06-28 16:04:08.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:04:08.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:08.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:08.113][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-06-28 16:04:08.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:04:08.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:08.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:08.117][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:04:08.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:04:08.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:08.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:08.120][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:04:08.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:04:08.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:08.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:08.124][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:04:08.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:04:08.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:08.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:08.128][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:04:08.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:04:08.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:08.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:08.131][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:04:08.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:04:08.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:08.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:08.135][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:04:08.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:04:08.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:08.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:08.144][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [16587, 0, 16587, C27H44O7, InChI=1S/C27H44O7/c1-23(2,32)9-8-22(31)26(5,33)21-7-11-27(34)16-12-18(28)17-13-19(29)20(30)14-24(17,3)15(16)6-10-25(21,27)4/h12,15,17,19-22,29-34H,6-11,13-14H2,1-5H3/t15-,17-,19+,20-,21-,22+,24+,25+,26+,27+/m0/s1, ...].
biodb.DEBUG[2025-06-28 16:04:08.145][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:04:08.145][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:04:08.146][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:04:08.150][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:04:08.151][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:04:08.152][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:04:08.153][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:04:08.154][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:04:08.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:04:08.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:08.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:08.157][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:04:08.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:04:08.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:08.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:08.161][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:04:08.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:04:08.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:08.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:08.164][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:04:08.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:04:08.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:08.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:08.168][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:08.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:08.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:08.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:08.171][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:08.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:08.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:08.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:08.175][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:04:08.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:04:08.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:08.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:08.179][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:04:08.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:04:08.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:08.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:08.182][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:04:08.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:04:08.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:08.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:08.186][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:04:08.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:04:08.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:08.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:08.189][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:04:08.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:04:08.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:08.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:08.193][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:04:08.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:04:08.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:08.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:08.196][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:08.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:08.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:08.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:08.200][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:08.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:08.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:08.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:08.204][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:08.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:08.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:08.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:08.207][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:08.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:08.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:08.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:08.211][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:08.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:08.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:08.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:08.214][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:08.215][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:08.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:08.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:08.218][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-06-28 16:04:08.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:04:08.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:08.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:08.221][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-06-28 16:04:08.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:04:08.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:08.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:08.225][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:04:08.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:04:08.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:08.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:08.228][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:04:08.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:04:08.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:08.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:08.232][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:04:08.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:04:08.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:08.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:08.236][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:04:08.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:04:08.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:08.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:08.239][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-06-28 16:04:08.240][private$selectFields]
biodb.TRACE[2025-06-28 16:04:08.241][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-06-28 16:04:08.242][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-06-28 16:04:08.243][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-06-28 16:04:08.243][ef$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:04:08.244][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:04:08.245][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:08.246][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:08.247][ef$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:04:08.248][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:04:08.249][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:08.250][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:08.250][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:08.251][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:08.252][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:08.253][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:08.254][ef$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:04:08.255][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:04:08.256][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:08.257][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:08.258][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:04:08.259][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:04:08.259][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:08.260][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:08.261][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:04:08.262][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:04:08.263][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:08.264][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:08.265][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:08.266][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:08.266][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:08.267][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:08.268][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:08.269][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:08.270][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:08.271][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:08.272][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:08.273][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:08.274][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:08.274][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:08.275][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-06-28 16:04:08.276][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:04:08.277][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:08.278][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:08.279][ef$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:04:08.280][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:04:08.281][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:08.282][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:08.282][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:04:08.283][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:04:08.284][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:08.285][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:08.286][ef$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:04:08.287][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:04:08.288][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:08.289][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:08.290][ef$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:04:08.291][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:04:08.291][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:08.292][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:08.293][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:08.294][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:08.295][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:08.296][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:08.297][ef$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:04:08.298][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:04:08.299][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:08.299][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:08.300][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:04:08.301][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:04:08.302][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:08.303][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:08.304][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:04:08.305][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:04:08.306][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:08.306][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:08.307][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:08.308][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:08.309][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:08.310][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:08.311][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:08.312][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:08.313][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:08.314][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:08.314][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:08.315][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:08.316][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:08.317][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:08.318][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-06-28 16:04:08.319][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:04:08.320][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:08.321][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:08.322][ef$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:04:08.323][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:04:08.323][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:08.324][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:08.325][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:04:08.326][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:04:08.327][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:08.328][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:08.329][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-06-28 16:04:08.330][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-06-28 16:04:08.330][ef$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:04:08.331][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:04:08.332][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:08.333][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:08.334][ef$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:04:08.335][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:04:08.336][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:08.337][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:08.338][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:08.339][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:08.339][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:08.340][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:08.341][ef$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:04:08.342][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:04:08.343][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:08.344][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:08.345][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:04:08.346][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:04:08.346][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:08.347][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:08.352][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:04:08.353][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:04:08.354][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:08.354][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:08.355][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:08.356][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:08.357][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:08.358][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:08.359][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:08.360][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:08.361][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:08.361][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:08.362][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-06-28 16:04:08.363][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:04:08.364][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:08.365][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:08.366][ef$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:04:08.367][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:04:08.368][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:08.368][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:08.369][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:04:08.370][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:04:08.371][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:08.372][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:08.373][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-06-28 16:04:08.374][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:04:08.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:04:08.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:08.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:08.377][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:04:08.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:04:08.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:08.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:08.381][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:04:08.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:04:08.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:08.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:08.384][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:04:08.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:04:08.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:08.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:08.388][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:04:08.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:04:08.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:08.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:08.392][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:04:08.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:04:08.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:08.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:08.395][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:08.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:08.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:08.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:08.399][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:08.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:08.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:08.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:08.402][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:08.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:08.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:08.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:08.406][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:04:08.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:04:08.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:08.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:08.410][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:04:08.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:04:08.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:08.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:08.413][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:04:08.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:04:08.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:08.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:08.417][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:04:08.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:04:08.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:08.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:08.420][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:04:08.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:04:08.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:08.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:08.424][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:04:08.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:04:08.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:08.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:08.428][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:04:08.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:04:08.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:08.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:08.432][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:04:08.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:04:08.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:08.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:08.435][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:04:08.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:04:08.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:08.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:08.439][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:08.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:08.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:08.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:08.443][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:08.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:08.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:08.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:08.446][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:08.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:08.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:08.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:08.450][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:08.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:08.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:08.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:08.453][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:08.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:08.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:08.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:08.457][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:08.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:08.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:08.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:08.461][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-06-28 16:04:08.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:04:08.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:08.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:08.465][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-06-28 16:04:08.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:04:08.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:08.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:08.468][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-06-28 16:04:08.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:04:08.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:08.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:08.472][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:04:08.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:04:08.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:08.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:08.475][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:04:08.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:04:08.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:08.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:08.479][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:04:08.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:04:08.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:08.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:08.483][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:04:08.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:04:08.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:08.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:08.486][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:04:08.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:04:08.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:08.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:08.490][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:04:08.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:04:08.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:08.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:08.499][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [19804, 0, 19804, C27H44O7, InChI=1S/C27H44O7/c1-23(2,32)8-5-9-26(33,15-28)22-7-11-27(34)17-12-19(29)18-13-20(30)21(31)14-24(18,3)16(17)6-10-25(22,27)4/h12,16,18,20-22,28,30-34H,5-11,13-15H2,1-4H3/t16-,18-,20+,21-,22-,24+,25+,26+,27+/m0/s1, ...].
biodb.DEBUG[2025-06-28 16:04:08.500][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-06-28 16:04:08.501][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-06-28 16:04:08.503][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:04:08.504][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:04:08.505][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:04:08.509][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:04:08.510][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:04:08.511][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:04:08.512][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-06-28 16:04:08.514][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-06-28 16:04:08.517][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-06-28 16:04:08.519][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/618204bc3e9a685033db1d9be9d78d44.content.
sched.DEBUG[2025-06-28 16:04:08.520][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-06-28 16:04:08.522][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:04:08.523][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:04:08.524][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:04:08.528][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:04:08.529][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:04:08.529][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:04:08.530][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:04:08.531][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:08.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:08.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:08.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:08.535][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:08.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:08.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:08.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:08.538][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:08.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:08.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:08.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:04:08.542][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:04:08.543][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:04:08.544][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:04:08.548][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:04:08.548][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:04:08.549][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:04:08.550][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:04:08.551][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:08.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:08.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:08.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:08.555][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:08.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:08.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:08.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:08.559][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:08.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:08.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:08.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:04:08.562][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:04:08.563][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:04:08.564][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:04:08.568][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:04:08.569][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:04:08.570][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:04:08.570][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:04:08.571][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:08.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:08.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:08.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:08.575][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:08.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:08.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:08.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:08.579][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:08.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:08.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:08.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:04:08.582][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:04:08.583][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:04:08.584][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:04:08.588][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:04:08.589][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:04:08.589][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:04:08.590][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:04:08.592][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:08.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:08.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:08.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:08.599][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:08.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:08.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:08.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:08.603][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:08.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:08.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:08.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:04:08.606][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:04:08.607][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:04:08.608][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:04:08.612][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:04:08.613][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:04:08.613][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:04:08.614][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:04:08.615][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:08.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:08.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:08.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:08.619][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:08.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:08.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:08.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:08.622][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:08.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:08.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:08.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:04:08.626][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:04:08.627][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:04:08.627][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:04:08.632][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:04:08.633][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:04:08.633][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:04:08.634][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:04:08.635][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:08.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:08.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:08.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:08.639][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:08.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:08.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:08.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:08.642][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:08.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:08.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:08.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:04:08.646][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:04:08.647][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:04:08.647][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:04:08.651][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:04:08.652][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:04:08.653][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:04:08.654][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:04:08.655][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:08.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:08.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:08.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:08.658][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:08.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:08.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:08.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:08.662][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:08.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:08.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:08.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:04:08.666][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:04:08.666][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:04:08.668][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:04:08.672][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:04:08.673][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:04:08.674][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:04:08.675][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:04:08.676][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:08.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:08.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:08.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:08.679][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:08.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:08.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:08.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:08.683][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:08.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:08.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:08.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
sched.DEBUG[2025-06-28 16:04:08.687][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-06-28 16:04:08.689][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-06-28 16:04:08.691][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/e0540b0a9d3ba75ce1522ce23f76319e.content.
sched.DEBUG[2025-06-28 16:04:08.692][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-06-28 16:04:08.694][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:04:08.695][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:04:08.696][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:04:08.700][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:04:08.701][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:04:08.701][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:04:08.702][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:04:08.703][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:08.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:08.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:08.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:08.707][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:08.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:08.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:08.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:08.710][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:08.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:08.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:08.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:04:08.714][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:04:08.715][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:04:08.716][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:04:08.719][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:04:08.721][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:04:08.721][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:04:08.722][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:04:08.723][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:08.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:08.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:08.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:08.727][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:08.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:08.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:08.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:08.730][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:08.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:08.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:08.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:04:08.734][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:04:08.735][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:04:08.736][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:04:08.739][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:04:08.740][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:04:08.741][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:04:08.742][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:04:08.743][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:08.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:08.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:08.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:08.747][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:08.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:08.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:08.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:08.750][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:08.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:08.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:08.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:04:08.754][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-06-28 16:04:08.756][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:04:08.756][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:04:08.757][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:04:08.761][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:04:08.762][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:04:08.763][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:04:08.763][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:04:08.764][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:04:08.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:04:08.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:08.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:08.768][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:04:08.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:04:08.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:08.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:08.772][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:04:08.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:04:08.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:08.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:08.775][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:04:08.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:04:08.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:08.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:08.779][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:08.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:08.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:08.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:08.783][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:08.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:08.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:08.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:08.786][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:04:08.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:04:08.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:08.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:08.790][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:04:08.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:04:08.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:08.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:08.793][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:04:08.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:04:08.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:08.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:08.797][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:04:08.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:04:08.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:08.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:08.801][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:04:08.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:04:08.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:08.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:08.804][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:04:08.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:04:08.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:08.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:08.808][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:08.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:08.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:08.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:08.811][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:08.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:08.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:08.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:08.815][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:08.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:08.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:08.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:08.819][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:08.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:08.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:08.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:08.822][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:08.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:08.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:08.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:08.826][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:08.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:08.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:08.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:08.829][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-06-28 16:04:08.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:04:08.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:08.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:08.833][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-06-28 16:04:08.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:04:08.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:08.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:08.837][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:04:08.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:04:08.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:08.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:08.844][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:04:08.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:04:08.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:08.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:08.848][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:04:08.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:04:08.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:08.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:08.851][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:04:08.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:04:08.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:08.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:08.855][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-06-28 16:04:08.856][private$selectFields]
biodb.TRACE[2025-06-28 16:04:08.857][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-06-28 16:04:08.858][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-06-28 16:04:08.858][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-06-28 16:04:08.859][ef$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:04:08.860][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:04:08.861][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:08.862][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:08.863][ef$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:04:08.864][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:04:08.865][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:08.866][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:08.866][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:08.867][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:08.868][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:08.869][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:08.870][ef$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:04:08.871][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:04:08.872][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:08.873][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:08.873][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:04:08.874][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:04:08.875][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:08.876][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:08.877][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:04:08.878][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:04:08.879][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:08.880][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:08.880][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:08.881][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:08.882][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:08.883][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:08.884][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:08.885][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:08.886][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:08.887][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:08.888][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:08.888][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:08.889][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:08.890][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:08.891][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-06-28 16:04:08.892][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:04:08.893][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:08.894][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:08.895][ef$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:04:08.895][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:04:08.896][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:08.897][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:08.898][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:04:08.899][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:04:08.900][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:08.901][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:08.902][ef$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:04:08.903][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:04:08.903][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:08.904][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:08.905][ef$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:04:08.906][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:04:08.907][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:08.908][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:08.909][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:08.910][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:08.911][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:08.911][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:08.912][ef$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:04:08.913][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:04:08.914][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:08.915][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:08.916][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:04:08.917][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:04:08.918][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:08.918][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:08.919][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:04:08.920][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:04:08.921][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:08.922][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:08.923][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:08.924][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:08.925][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:08.925][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:08.926][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:08.927][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:08.928][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:08.929][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:08.930][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:08.931][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:08.932][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:08.933][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:08.933][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-06-28 16:04:08.934][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:04:08.935][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:08.936][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:08.937][ef$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:04:08.938][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:04:08.939][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:08.940][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:08.940][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:04:08.941][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:04:08.942][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:08.943][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:08.944][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-06-28 16:04:08.945][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-06-28 16:04:08.946][ef$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:04:08.947][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:04:08.948][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:08.948][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:08.949][ef$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:04:08.950][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:04:08.951][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:08.952][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:08.953][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:08.954][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:08.955][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:08.956][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:08.956][ef$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:04:08.957][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:04:08.958][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:08.959][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:08.960][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:04:08.961][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:04:08.962][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:08.963][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:08.964][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:04:08.964][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:04:08.965][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:08.966][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:08.967][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:08.968][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:08.969][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:08.970][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:08.971][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:08.972][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:08.972][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:08.973][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:08.974][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:08.975][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:08.976][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:08.977][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:08.978][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-06-28 16:04:08.979][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:04:08.980][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:08.980][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:08.981][ef$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:04:08.982][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:04:08.983][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:08.984][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:08.985][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:04:08.986][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:04:08.987][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:08.988][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:08.988][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-06-28 16:04:08.989][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:04:08.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:04:08.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:08.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:08.993][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:04:08.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:04:08.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:08.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:08.997][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:04:08.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:04:08.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:08.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:09.000][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:04:09.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:04:09.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:09.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:09.004][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:04:09.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:04:09.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:09.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:09.008][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:04:09.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:04:09.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:09.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:09.011][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:09.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:09.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:09.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:09.015][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:09.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:09.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:09.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:09.019][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:09.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:09.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:09.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:09.022][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:04:09.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:04:09.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:09.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:09.026][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:04:09.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:04:09.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:09.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:09.030][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:04:09.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:04:09.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:09.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:09.033][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:04:09.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:04:09.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:09.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:09.037][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:04:09.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:04:09.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:09.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:09.041][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:04:09.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:04:09.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:09.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:09.044][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:04:09.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:04:09.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:09.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:09.048][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:04:09.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:04:09.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:09.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:09.052][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:04:09.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:04:09.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:09.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:09.055][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:09.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:09.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:09.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:09.059][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:09.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:09.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:09.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:09.063][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:09.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:09.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:09.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:09.066][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:09.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:09.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:09.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:09.070][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:09.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:09.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:09.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:09.074][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:09.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:09.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:09.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:09.077][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:09.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:09.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:09.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:09.081][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:09.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:09.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:09.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:09.092][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:09.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:09.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:09.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:09.096][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-06-28 16:04:09.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:04:09.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:09.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:09.099][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-06-28 16:04:09.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:04:09.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:09.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:09.103][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-06-28 16:04:09.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:04:09.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:09.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:09.106][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:04:09.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:04:09.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:09.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:09.110][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:04:09.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:04:09.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:09.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:09.114][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:04:09.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:04:09.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:09.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:09.117][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:04:09.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:04:09.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:09.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:09.121][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:04:09.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:04:09.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:09.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:09.124][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:04:09.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:04:09.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:09.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:09.134][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [7799, 0, 7799, C16H31N2O8P, InChI=1S/C16H28N2O4.H3O4P/c1-5-12(6-2)22-14-9-11(16(20)21-7-3)8-13(17)15(14)18-10(4)19;1-5(2,3)4/h9,12-15H,5-8,17H2,1-4H3,(H,18,19);(H3,1,2,3,4)/t13-,14+,15+;/m0./s1, ...].
biodb.DEBUG[2025-06-28 16:04:09.135][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:04:09.135][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:04:09.136][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:04:09.140][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:04:09.141][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:04:09.142][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:04:09.143][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:04:09.144][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:04:09.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:04:09.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:09.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:09.147][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:04:09.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:04:09.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:09.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:09.151][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:04:09.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:04:09.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:09.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:09.155][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:04:09.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:04:09.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:09.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:09.158][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:09.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:09.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:09.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:09.162][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:09.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:09.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:09.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:09.165][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:04:09.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:04:09.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:09.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:09.169][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:04:09.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:04:09.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:09.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:09.172][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:04:09.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:04:09.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:09.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:09.176][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:04:09.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:04:09.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:09.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:09.180][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:04:09.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:04:09.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:09.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:09.183][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:04:09.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:04:09.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:09.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:09.187][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:09.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:09.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:09.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:09.190][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:09.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:09.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:09.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:09.194][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:09.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:09.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:09.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:09.197][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:09.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:09.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:09.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:09.201][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:09.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:09.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:09.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:09.205][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:09.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:09.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:09.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:09.208][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-06-28 16:04:09.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:04:09.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:09.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:09.212][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-06-28 16:04:09.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:04:09.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:09.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:09.215][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:04:09.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:04:09.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:09.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:09.219][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:04:09.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:04:09.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:09.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:09.223][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:04:09.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:04:09.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:09.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:09.226][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:04:09.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:04:09.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:09.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:09.230][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-06-28 16:04:09.231][private$selectFields]
biodb.TRACE[2025-06-28 16:04:09.232][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-06-28 16:04:09.232][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-06-28 16:04:09.233][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-06-28 16:04:09.234][ef$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:04:09.235][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:04:09.236][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:09.237][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:09.238][ef$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:04:09.239][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:04:09.240][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:09.241][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:09.241][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:09.242][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:09.243][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:09.244][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:09.245][ef$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:04:09.246][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:04:09.247][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:09.248][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:09.249][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:04:09.250][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:04:09.250][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:09.251][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:09.252][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:04:09.253][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:04:09.254][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:09.255][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:09.256][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:09.257][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:09.258][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:09.258][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:09.259][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:09.260][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:09.261][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:09.262][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:09.263][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:09.264][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:09.265][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:09.266][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:09.267][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-06-28 16:04:09.267][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:04:09.268][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:09.269][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:09.270][ef$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:04:09.271][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:04:09.272][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:09.273][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:09.274][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:04:09.275][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:04:09.275][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:09.276][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:09.277][ef$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:04:09.278][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:04:09.279][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:09.280][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:09.281][ef$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:04:09.282][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:04:09.283][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:09.284][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:09.284][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:09.285][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:09.286][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:09.287][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:09.288][ef$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:04:09.289][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:04:09.290][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:09.291][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:09.292][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:04:09.293][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:04:09.293][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:09.294][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:09.295][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:04:09.296][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:04:09.297][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:09.298][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:09.299][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:09.300][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:09.301][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:09.302][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:09.302][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:09.303][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:09.304][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:09.305][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:09.306][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:09.307][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:09.308][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:09.309][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:09.310][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-06-28 16:04:09.311][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:04:09.311][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:09.312][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:09.313][ef$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:04:09.314][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:04:09.315][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:09.316][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:09.317][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:04:09.318][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:04:09.319][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:09.319][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:09.320][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-06-28 16:04:09.321][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-06-28 16:04:09.322][ef$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:04:09.323][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:04:09.324][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:09.325][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:09.326][ef$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:04:09.327][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:04:09.328][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:09.329][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:09.334][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:09.335][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:09.336][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:09.337][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:09.338][ef$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:04:09.339][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:04:09.339][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:09.340][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:09.341][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:04:09.342][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:04:09.343][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:09.344][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:09.345][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:04:09.346][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:04:09.347][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:09.347][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:09.348][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:09.349][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:09.350][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:09.351][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:09.352][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:09.353][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:09.354][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:09.354][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:09.355][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-06-28 16:04:09.356][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:04:09.357][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:09.358][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:09.359][ef$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:04:09.360][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:04:09.361][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:09.362][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:09.362][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:04:09.363][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:04:09.364][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:09.365][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:09.366][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-06-28 16:04:09.367][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:04:09.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:04:09.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:09.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:09.371][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:04:09.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:04:09.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:09.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:09.374][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:04:09.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:04:09.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:09.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:09.378][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:04:09.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:04:09.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:09.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:09.381][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:04:09.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:04:09.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:09.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:09.385][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:04:09.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:04:09.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:09.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:09.389][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:09.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:09.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:09.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:09.392][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:09.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:09.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:09.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:09.396][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:09.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:09.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:09.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:09.399][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:04:09.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:04:09.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:09.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:09.403][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:04:09.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:04:09.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:09.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:09.407][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:04:09.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:04:09.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:09.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:09.410][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:04:09.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:04:09.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:09.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:09.414][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:04:09.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:04:09.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:09.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:09.417][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:04:09.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:04:09.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:09.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:09.421][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:04:09.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:04:09.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:09.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:09.425][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:04:09.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:04:09.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:09.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:09.428][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:04:09.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:04:09.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:09.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:09.432][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:09.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:09.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:09.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:09.435][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:09.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:09.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:09.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:09.439][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:09.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:09.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:09.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:09.443][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:09.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:09.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:09.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:09.446][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:09.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:09.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:09.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:09.450][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:09.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:09.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:09.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:09.454][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-06-28 16:04:09.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:04:09.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:09.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:09.457][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-06-28 16:04:09.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:04:09.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:09.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:09.461][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-06-28 16:04:09.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:04:09.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:09.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:09.464][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:04:09.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:04:09.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:09.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:09.468][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:04:09.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:04:09.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:09.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:09.472][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:04:09.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:04:09.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:09.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:09.475][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:04:09.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:04:09.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:09.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:09.479][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:04:09.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:04:09.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:09.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:09.483][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:04:09.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:04:09.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:09.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:09.492][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [71954, 0, 71954, C18H21F3N6O2, InChI=1S/C18H21F3N6O2/c19-18(20,21)13-9-15(22)23-11-12(13)14-10-16(26-1-5-28-6-2-26)25-17(24-14)27-3-7-29-8-4-27/h9-11H,1-8H2,(H2,22,23), ...].
biodb.DEBUG[2025-06-28 16:04:09.493][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:04:09.493][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:04:09.494][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:04:09.498][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:04:09.499][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:04:09.500][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:04:09.501][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:04:09.502][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:04:09.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:04:09.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:09.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:09.505][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:04:09.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:04:09.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:09.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:09.509][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:04:09.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:04:09.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:09.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:09.513][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:04:09.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:04:09.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:09.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:09.516][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:09.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:09.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:09.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:09.520][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:09.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:09.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:09.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:09.523][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:04:09.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:04:09.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:09.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:09.527][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:04:09.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:04:09.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:09.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:09.531][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:04:09.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:04:09.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:09.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:09.534][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:04:09.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:04:09.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:09.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:09.538][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:04:09.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:04:09.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:09.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:09.542][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:04:09.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:04:09.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:09.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:09.545][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:09.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:09.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:09.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:09.549][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:09.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:09.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:09.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:09.552][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:09.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:09.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:09.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:09.556][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:09.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:09.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:09.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:09.560][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:09.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:09.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:09.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:09.563][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:09.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:09.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:09.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:09.567][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-06-28 16:04:09.568][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:04:09.569][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:09.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:09.570][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-06-28 16:04:09.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:04:09.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:09.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:09.578][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:04:09.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:04:09.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:09.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:09.582][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:04:09.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:04:09.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:09.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:09.585][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:04:09.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:04:09.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:09.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:09.589][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:04:09.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:04:09.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:09.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:09.592][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-06-28 16:04:09.593][private$selectFields]
biodb.TRACE[2025-06-28 16:04:09.594][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-06-28 16:04:09.595][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-06-28 16:04:09.596][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-06-28 16:04:09.597][ef$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:04:09.598][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:04:09.598][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:09.599][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:09.600][ef$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:04:09.601][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:04:09.602][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:09.603][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:09.604][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:09.605][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:09.605][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:09.606][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:09.607][ef$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:04:09.608][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:04:09.609][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:09.610][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:09.611][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:04:09.612][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:04:09.613][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:09.613][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:09.614][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:04:09.615][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:04:09.616][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:09.617][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:09.618][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:09.619][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:09.620][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:09.620][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:09.621][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:09.622][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:09.623][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:09.624][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:09.625][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:09.626][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:09.627][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:09.627][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:09.628][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-06-28 16:04:09.629][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:04:09.630][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:09.631][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:09.632][ef$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:04:09.633][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:04:09.634][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:09.634][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:09.635][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:04:09.636][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:04:09.637][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:09.638][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:09.639][ef$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:04:09.640][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:04:09.641][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:09.641][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:09.642][ef$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:04:09.643][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:04:09.644][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:09.645][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:09.646][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:09.647][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:09.648][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:09.648][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:09.649][ef$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:04:09.650][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:04:09.651][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:09.652][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:09.653][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:04:09.654][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:04:09.655][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:09.655][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:09.656][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:04:09.657][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:04:09.658][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:09.659][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:09.660][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:09.661][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:09.662][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:09.662][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:09.663][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:09.664][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:09.665][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:09.666][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:09.667][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:09.668][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:09.669][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:09.670][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:09.670][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-06-28 16:04:09.671][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:04:09.672][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:09.673][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:09.674][ef$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:04:09.675][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:04:09.676][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:09.677][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:09.677][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:04:09.678][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:04:09.679][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:09.680][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:09.681][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-06-28 16:04:09.682][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-06-28 16:04:09.683][ef$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:04:09.684][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:04:09.685][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:09.685][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:09.686][ef$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:04:09.687][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:04:09.688][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:09.689][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:09.690][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:09.691][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:09.692][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:09.693][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:09.693][ef$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:04:09.694][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:04:09.695][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:09.696][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:09.697][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:04:09.698][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:04:09.699][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:09.700][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:09.700][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:04:09.701][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:04:09.702][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:09.703][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:09.704][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:09.705][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:09.706][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:09.707][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:09.708][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:09.708][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:09.709][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:09.710][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:09.711][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-06-28 16:04:09.712][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:04:09.713][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:09.714][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:09.715][ef$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:04:09.716][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:04:09.716][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:09.717][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:09.718][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:04:09.719][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:04:09.720][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:09.721][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:09.722][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-06-28 16:04:09.723][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:04:09.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:04:09.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:09.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:09.726][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:04:09.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:04:09.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:09.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:09.730][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:04:09.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:04:09.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:09.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:09.734][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:04:09.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:04:09.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:09.737][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:09.737][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:04:09.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:04:09.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:09.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:09.741][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:04:09.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:04:09.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:09.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:09.745][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:09.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:09.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:09.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:09.748][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:09.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:09.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:09.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:09.752][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:09.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:09.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:09.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:09.756][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:04:09.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:04:09.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:09.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:09.759][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:04:09.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:04:09.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:09.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:09.763][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:04:09.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:04:09.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:09.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:09.767][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:04:09.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:04:09.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:09.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:09.770][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:04:09.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:04:09.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:09.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:09.774][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:04:09.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:04:09.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:09.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:09.778][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:04:09.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:04:09.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:09.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:09.781][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:04:09.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:04:09.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:09.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:09.785][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:04:09.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:04:09.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:09.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:09.789][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:09.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:09.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:09.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:09.792][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:09.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:09.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:09.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:09.796][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:09.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:09.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:09.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:09.800][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:09.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:09.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:09.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:09.803][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:09.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:09.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:09.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:09.807][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:09.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:09.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:09.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:09.811][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-06-28 16:04:09.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:04:09.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:09.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:09.814][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-06-28 16:04:09.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:04:09.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:09.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:09.822][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-06-28 16:04:09.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:04:09.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:09.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:09.826][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:04:09.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:04:09.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:09.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:09.829][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:04:09.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:04:09.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:09.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:09.833][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:04:09.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:04:09.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:09.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:09.836][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:04:09.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:04:09.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:09.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:09.840][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:04:09.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:04:09.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:09.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:09.844][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:04:09.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:04:09.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:09.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:09.852][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [197612, 0, 197612, C18H18O9S, InChI=1S/C18H18O9S/c1-7-3-9(19)13-11(4-7)27-16-8(14(13)21)5-12(28-16)18(25,17(24)26-2)6-10(20)15(22)23/h3-4,10,12,19-20,25H,5-6H2,1-2H3,(H,22,23)/t10-,12+,18?/m1/s1, ...].
biodb.DEBUG[2025-06-28 16:04:09.853][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-06-28 16:04:09.854][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-06-28 16:04:09.861][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:04:09.862][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:04:09.863][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:04:09.867][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:04:09.868][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:04:09.869][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:04:09.869][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-06-28 16:04:09.872][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-06-28 16:04:09.874][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-06-28 16:04:09.876][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/8fc54eee7e982ce554bee8000d8203f7.content.
sched.DEBUG[2025-06-28 16:04:09.877][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-06-28 16:04:09.879][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:04:09.880][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:04:09.881][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:04:09.884][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:04:09.885][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:04:09.886][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:04:09.887][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:04:09.888][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:09.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:09.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:09.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:09.891][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:09.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:09.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:09.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:09.895][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:09.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:09.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:09.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
sched.DEBUG[2025-06-28 16:04:09.899][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-06-28 16:04:09.901][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-06-28 16:04:09.903][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/6def615835d7c1dfccd5a5f135bd2f9d.content.
sched.DEBUG[2025-06-28 16:04:09.904][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-06-28 16:04:09.907][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:04:09.907][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:04:09.908][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:04:09.912][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:04:09.913][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:04:09.914][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:04:09.914][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:04:09.915][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:09.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:09.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:09.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:09.919][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:09.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:09.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:09.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:09.923][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:09.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:09.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:09.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:04:09.926][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:04:09.927][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:04:09.928][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:04:09.932][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:04:09.933][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:04:09.933][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:04:09.934][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:04:09.935][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:09.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:09.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:09.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:09.939][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:09.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:09.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:09.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:09.942][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:09.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:09.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:09.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:04:09.946][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-06-28 16:04:09.948][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:04:09.948][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:04:09.949][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:04:09.953][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:04:09.954][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:04:09.955][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:04:09.955][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:04:09.956][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:04:09.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:04:09.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:09.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:09.960][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:04:09.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:04:09.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:09.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:09.964][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:04:09.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:04:09.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:09.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:09.967][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:04:09.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:04:09.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:09.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:09.971][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:09.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:09.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:09.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:09.975][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:09.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:09.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:09.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:09.978][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:04:09.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:04:09.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:09.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:09.982][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:04:09.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:04:09.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:09.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:09.986][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:04:09.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:04:09.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:09.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:09.989][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:04:09.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:04:09.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:09.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:09.993][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:04:09.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:04:09.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:09.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:09.997][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:04:09.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:04:09.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:09.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:10.000][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:10.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:10.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:10.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:10.004][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:10.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:10.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:10.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:10.007][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:10.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:10.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:10.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:10.011][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:10.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:10.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:10.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:10.015][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:10.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:10.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:10.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:10.018][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:10.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:10.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:10.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:10.022][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-06-28 16:04:10.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:04:10.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:10.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:10.025][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-06-28 16:04:10.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:04:10.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:10.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:10.029][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:04:10.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:04:10.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:10.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:10.033][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:04:10.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:04:10.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:10.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:10.036][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:04:10.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:04:10.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:10.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:10.040][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:04:10.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:04:10.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:10.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:10.044][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-06-28 16:04:10.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-06-28 16:04:10.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:10.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:10.047][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-06-28 16:04:10.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-06-28 16:04:10.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:10.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:10.051][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-06-28 16:04:10.052][private$selectFields]
biodb.TRACE[2025-06-28 16:04:10.053][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-06-28 16:04:10.053][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-06-28 16:04:10.054][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-06-28 16:04:10.055][ef$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:04:10.056][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:04:10.057][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:10.058][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:10.059][ef$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:04:10.060][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:04:10.061][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:10.061][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:10.062][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:10.063][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:10.068][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:10.069][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:10.070][ef$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:04:10.071][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:04:10.072][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:10.073][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:10.074][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:04:10.075][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:04:10.076][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:10.077][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:10.078][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:04:10.078][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:04:10.079][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:10.080][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:10.081][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:10.082][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:10.083][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:10.084][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:10.085][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:10.086][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:10.086][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:10.087][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:10.088][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:10.089][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:10.090][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:10.091][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:10.092][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-06-28 16:04:10.093][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:04:10.093][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:10.094][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:10.095][ef$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:04:10.096][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:04:10.097][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:10.098][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:10.099][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:04:10.100][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:04:10.100][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:10.101][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:10.102][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-06-28 16:04:10.103][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-06-28 16:04:10.104][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:10.105][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:10.106][ef$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:04:10.107][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:04:10.107][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:10.108][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:10.109][ef$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:04:10.110][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:04:10.111][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:10.112][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:10.113][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:10.114][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:10.114][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:10.115][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:10.116][ef$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:04:10.117][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:04:10.118][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:10.119][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:10.120][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:04:10.121][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:04:10.121][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:10.122][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:10.123][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:04:10.124][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:04:10.125][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:10.126][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:10.127][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:10.128][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:10.129][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:10.129][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:10.130][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:10.131][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:10.132][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:10.133][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:10.134][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:10.135][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:10.136][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:10.136][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:10.137][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-06-28 16:04:10.138][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:04:10.139][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:10.140][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:10.141][ef$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:04:10.142][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:04:10.143][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:10.143][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:10.144][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:04:10.145][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:04:10.146][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:10.147][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:10.148][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-06-28 16:04:10.149][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-06-28 16:04:10.150][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:10.151][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:10.151][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-06-28 16:04:10.152][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-06-28 16:04:10.153][ef$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:04:10.154][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:04:10.155][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:10.156][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:10.157][ef$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:04:10.158][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:04:10.159][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:10.159][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:10.160][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:10.161][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:10.162][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:10.163][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:10.164][ef$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:04:10.165][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:04:10.166][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:10.166][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:10.167][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:04:10.168][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:04:10.169][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:10.170][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:10.171][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:04:10.172][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:04:10.173][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:10.173][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:10.174][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:10.175][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:10.176][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:10.177][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:10.178][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:10.179][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:10.180][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:10.181][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:10.181][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-06-28 16:04:10.182][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:04:10.183][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:10.184][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:10.185][ef$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:04:10.186][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:04:10.187][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:10.188][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:10.188][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:04:10.189][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:04:10.190][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:10.191][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:10.192][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-06-28 16:04:10.193][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:04:10.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:04:10.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:10.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:10.197][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:04:10.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:04:10.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:10.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:10.200][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:04:10.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:04:10.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:10.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:10.204][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:04:10.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:04:10.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:10.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:10.208][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:04:10.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:04:10.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:10.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:10.211][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:04:10.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:04:10.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:10.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:10.215][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:10.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:10.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:10.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:10.219][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:10.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:10.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:10.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:10.222][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:10.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:10.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:10.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:10.226][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:04:10.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:04:10.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:10.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:10.230][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:04:10.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:04:10.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:10.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:10.233][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:04:10.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:04:10.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:10.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:10.237][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:04:10.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:04:10.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:10.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:10.241][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:04:10.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:04:10.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:10.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:10.244][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:04:10.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:04:10.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:10.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:10.248][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:04:10.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:04:10.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:10.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:10.252][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:04:10.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:04:10.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:10.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:10.255][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:04:10.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:04:10.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:10.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:10.259][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:10.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:10.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:10.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:10.262][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:10.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:10.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:10.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:10.266][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:10.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:10.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:10.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:10.270][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:10.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:10.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:10.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:10.273][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:10.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:10.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:10.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:10.277][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:10.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:10.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:10.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:10.281][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-06-28 16:04:10.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:04:10.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:10.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:10.284][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-06-28 16:04:10.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:04:10.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:10.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:10.288][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-06-28 16:04:10.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:04:10.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:10.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:10.292][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:04:10.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:04:10.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:10.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:10.295][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:04:10.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:04:10.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:10.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:10.299][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:04:10.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:04:10.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:10.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:10.303][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:04:10.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:04:10.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:10.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:10.306][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:04:10.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:04:10.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:10.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:10.314][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:04:10.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:04:10.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:10.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:10.323][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [192288, 0, 192288, C27H54O2, InChI=1S/C27H54O2/c1-3-4-5-6-7-8-9-10-11-12-13-14-15-16-17-18-19-20-21-22-23-24-25-26-27(28)29-2/h3-26H2,1-2H3, ...].
biodb.DEBUG[2025-06-28 16:04:10.324][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:04:10.324][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:04:10.325][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:04:10.329][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:04:10.330][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:04:10.331][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:04:10.332][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:04:10.333][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:04:10.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:04:10.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:10.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:10.336][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:04:10.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:04:10.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:10.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:10.340][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:04:10.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:04:10.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:10.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:10.344][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:04:10.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:04:10.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:10.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:10.347][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:10.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:10.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:10.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:10.351][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:10.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:10.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:10.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:10.354][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:04:10.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:04:10.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:10.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:10.358][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:04:10.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:04:10.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:10.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:10.361][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:04:10.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:04:10.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:10.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:10.365][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:04:10.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:04:10.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:10.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:10.368][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:04:10.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:04:10.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:10.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:10.372][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:04:10.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:04:10.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:10.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:10.376][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:10.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:10.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:10.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:10.379][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:10.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:10.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:10.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:10.383][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:10.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:10.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:10.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:10.386][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:10.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:10.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:10.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:10.390][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:10.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:10.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:10.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:10.393][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:10.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:10.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:10.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:10.397][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-06-28 16:04:10.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:04:10.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:10.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:10.401][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-06-28 16:04:10.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:04:10.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:10.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:10.404][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:04:10.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:04:10.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:10.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:10.408][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:04:10.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:04:10.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:10.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:10.411][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:04:10.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:04:10.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:10.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:10.415][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:04:10.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:04:10.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:10.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:10.418][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-06-28 16:04:10.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-06-28 16:04:10.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:10.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:10.422][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-06-28 16:04:10.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-06-28 16:04:10.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:10.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:10.426][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-06-28 16:04:10.427][private$selectFields]
biodb.TRACE[2025-06-28 16:04:10.427][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-06-28 16:04:10.428][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-06-28 16:04:10.429][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-06-28 16:04:10.430][ef$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:04:10.431][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:04:10.432][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:10.433][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:10.434][ef$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:04:10.435][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:04:10.435][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:10.436][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:10.437][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:10.438][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:10.439][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:10.440][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:10.441][ef$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:04:10.442][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:04:10.443][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:10.443][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:10.444][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:04:10.445][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:04:10.446][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:10.447][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:10.448][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:04:10.449][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:04:10.450][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:10.451][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:10.451][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:10.452][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:10.453][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:10.454][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:10.455][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:10.456][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:10.457][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:10.458][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:10.459][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:10.460][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:10.460][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:10.461][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:10.462][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-06-28 16:04:10.463][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:04:10.464][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:10.465][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:10.466][ef$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:04:10.467][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:04:10.468][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:10.468][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:10.469][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:04:10.470][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:04:10.471][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:10.472][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:10.473][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-06-28 16:04:10.474][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-06-28 16:04:10.475][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:10.476][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:10.477][ef$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:04:10.478][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:04:10.479][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:10.479][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:10.480][ef$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:04:10.481][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:04:10.482][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:10.483][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:10.484][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:10.485][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:10.486][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:10.486][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:10.487][ef$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:04:10.488][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:04:10.489][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:10.490][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:10.491][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:04:10.492][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:04:10.493][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:10.494][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:10.495][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:04:10.495][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:04:10.496][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:10.497][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:10.498][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:10.499][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:10.500][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:10.501][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:10.502][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:10.503][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:10.503][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:10.504][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:10.505][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:10.506][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:10.507][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:10.508][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:10.509][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-06-28 16:04:10.510][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:04:10.511][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:10.511][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:10.512][ef$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:04:10.513][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:04:10.514][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:10.515][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:10.516][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:04:10.517][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:04:10.518][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:10.519][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:10.520][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-06-28 16:04:10.520][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-06-28 16:04:10.521][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:10.522][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:10.523][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-06-28 16:04:10.524][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-06-28 16:04:10.525][ef$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:04:10.526][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:04:10.527][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:10.528][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:10.529][ef$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:04:10.529][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:04:10.530][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:10.531][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:10.532][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:10.533][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:10.534][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:10.535][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:10.536][ef$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:04:10.537][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:04:10.537][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:10.538][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:10.539][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:04:10.540][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:04:10.541][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:10.542][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:10.543][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:04:10.544][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:04:10.545][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:10.545][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:10.546][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:10.547][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:10.548][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:10.549][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:10.550][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:10.551][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:10.556][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:10.557][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:10.558][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:10.559][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:10.560][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:10.560][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:10.561][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-06-28 16:04:10.562][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:04:10.563][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:10.564][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:10.565][ef$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:04:10.566][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:04:10.567][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:10.567][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:10.568][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:04:10.569][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:04:10.570][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:10.571][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:10.572][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-06-28 16:04:10.573][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:04:10.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:04:10.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:10.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:10.576][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:04:10.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:04:10.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:10.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:10.580][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:04:10.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:04:10.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:10.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:10.584][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:04:10.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:04:10.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:10.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:10.587][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:04:10.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:04:10.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:10.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:10.591][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:04:10.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:04:10.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:10.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:10.594][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:10.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:10.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:10.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:10.598][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:10.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:10.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:10.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:10.601][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:10.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:10.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:10.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:10.605][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:04:10.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:04:10.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:10.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:10.609][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:04:10.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:04:10.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:10.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:10.612][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:04:10.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:04:10.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:10.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:10.616][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:04:10.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:04:10.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:10.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:10.620][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:04:10.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:04:10.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:10.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:10.623][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:04:10.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:04:10.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:10.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:10.627][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:04:10.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:04:10.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:10.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:10.630][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:04:10.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:04:10.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:10.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:10.634][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:04:10.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:04:10.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:10.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:10.638][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:10.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:10.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:10.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:10.641][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:10.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:10.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:10.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:10.645][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:10.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:10.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:10.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:10.648][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:10.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:10.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:10.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:10.652][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:10.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:10.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:10.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:10.656][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:10.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:10.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:10.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:10.659][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:10.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:10.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:10.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:10.663][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:10.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:10.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:10.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:10.666][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:10.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:10.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:10.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:10.670][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-06-28 16:04:10.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:04:10.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:10.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:10.674][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-06-28 16:04:10.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:04:10.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:10.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:10.677][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-06-28 16:04:10.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:04:10.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:10.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:10.681][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:04:10.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:04:10.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:10.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:10.685][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:04:10.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:04:10.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:10.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:10.688][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:04:10.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:04:10.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:10.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:10.692][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:04:10.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:04:10.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:10.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:10.695][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:04:10.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:04:10.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:10.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:10.699][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:04:10.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:04:10.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:10.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:10.708][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [15440, 0, 15440, C30H50, InChI=1S/C30H50/c1-25(2)15-11-19-29(7)23-13-21-27(5)17-9-10-18-28(6)22-14-24-30(8)20-12-16-26(3)4/h15-18,23-24H,9-14,19-22H2,1-8H3/b27-17+,28-18+,29-23+,30-24+, ...].
biodb.DEBUG[2025-06-28 16:04:10.709][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:04:10.710][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:04:10.711][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:04:10.715][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:04:10.716][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:04:10.717][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:04:10.718][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:04:10.719][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:04:10.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:04:10.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:10.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:10.722][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:04:10.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:04:10.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:10.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:10.726][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:04:10.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:04:10.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:10.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:10.730][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:04:10.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:04:10.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:10.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:10.733][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:10.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:10.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:10.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:10.737][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:10.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:10.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:10.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:10.740][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:04:10.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:04:10.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:10.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:10.744][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:04:10.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:04:10.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:10.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:10.748][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:04:10.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:04:10.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:10.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:10.751][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:04:10.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:04:10.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:10.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:10.755][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:04:10.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:04:10.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:10.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:10.759][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:04:10.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:04:10.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:10.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:10.762][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:10.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:10.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:10.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:10.766][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:10.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:10.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:10.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:10.769][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:10.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:10.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:10.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:10.773][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:10.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:10.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:10.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:10.777][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:10.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:10.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:10.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:10.780][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:10.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:10.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:10.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:10.784][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-06-28 16:04:10.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:04:10.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:10.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:10.787][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-06-28 16:04:10.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:04:10.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:10.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:10.791][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:04:10.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:04:10.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:10.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:10.795][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:04:10.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:04:10.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:10.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:10.803][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:04:10.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:04:10.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:10.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:10.806][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:04:10.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:04:10.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:10.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:10.810][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-06-28 16:04:10.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-06-28 16:04:10.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:10.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:10.813][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-06-28 16:04:10.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-06-28 16:04:10.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:10.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:10.817][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-06-28 16:04:10.818][private$selectFields]
biodb.TRACE[2025-06-28 16:04:10.818][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-06-28 16:04:10.819][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-06-28 16:04:10.820][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-06-28 16:04:10.821][ef$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:04:10.822][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:04:10.823][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:10.824][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:10.825][ef$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:04:10.825][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:04:10.826][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:10.827][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:10.828][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:10.829][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:10.830][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:10.831][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:10.832][ef$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:04:10.832][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:04:10.833][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:10.834][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:10.835][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:04:10.836][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:04:10.837][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:10.838][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:10.839][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:04:10.839][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:04:10.840][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:10.841][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:10.842][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:10.843][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:10.844][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:10.845][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:10.846][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:10.847][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:10.847][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:10.848][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:10.849][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:10.850][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:10.851][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:10.852][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:10.853][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-06-28 16:04:10.854][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:04:10.854][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:10.855][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:10.856][ef$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:04:10.857][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:04:10.858][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:10.859][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:10.860][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:04:10.861][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:04:10.862][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:10.862][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:10.863][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-06-28 16:04:10.864][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-06-28 16:04:10.865][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:10.866][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:10.867][ef$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:04:10.868][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:04:10.869][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:10.869][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:10.870][ef$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:04:10.871][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:04:10.872][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:10.873][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:10.874][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:10.875][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:10.876][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:10.877][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:10.877][ef$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:04:10.878][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:04:10.879][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:10.880][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:10.881][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:04:10.882][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:04:10.883][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:10.884][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:10.884][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:04:10.885][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:04:10.886][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:10.887][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:10.888][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:10.889][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:10.890][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:10.891][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:10.891][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:10.892][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:10.893][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:10.894][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:10.895][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:10.896][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:10.897][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:10.898][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:10.899][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-06-28 16:04:10.899][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:04:10.900][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:10.901][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:10.902][ef$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:04:10.903][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:04:10.904][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:10.905][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:10.906][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:04:10.907][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:04:10.907][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:10.908][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:10.909][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-06-28 16:04:10.910][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-06-28 16:04:10.911][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:10.912][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:10.913][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-06-28 16:04:10.914][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-06-28 16:04:10.914][ef$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:04:10.915][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:04:10.916][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:10.917][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:10.918][ef$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:04:10.919][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:04:10.920][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:10.921][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:10.922][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:10.922][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:10.923][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:10.924][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:10.925][ef$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:04:10.926][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:04:10.927][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:10.928][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:10.929][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:04:10.930][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:04:10.930][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:10.931][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:10.932][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:04:10.933][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:04:10.934][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:10.935][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:10.936][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:10.937][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:10.938][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:10.938][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:10.939][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:10.940][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:10.941][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:10.942][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:10.943][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-06-28 16:04:10.944][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:04:10.945][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:10.946][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:10.946][ef$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:04:10.947][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:04:10.948][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:10.949][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:10.950][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:04:10.951][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:04:10.952][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:10.953][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:10.954][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-06-28 16:04:10.955][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:04:10.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:04:10.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:10.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:10.958][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:04:10.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:04:10.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:10.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:10.962][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:04:10.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:04:10.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:10.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:10.966][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:04:10.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:04:10.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:10.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:10.969][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:04:10.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:04:10.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:10.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:10.973][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:04:10.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:04:10.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:10.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:10.977][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:10.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:10.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:10.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:10.980][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:10.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:10.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:10.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:10.984][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:10.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:10.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:10.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:10.987][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:04:10.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:04:10.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:10.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:10.991][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:04:10.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:04:10.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:10.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:10.995][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:04:10.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:04:10.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:10.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:10.998][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:04:10.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:04:11.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:11.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:11.002][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:04:11.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:04:11.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:11.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:11.006][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:04:11.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:04:11.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:11.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:11.009][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:04:11.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:04:11.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:11.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:11.013][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:04:11.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:04:11.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:11.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:11.017][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:04:11.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:04:11.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:11.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:11.020][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:11.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:11.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:11.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:11.024][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:11.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:11.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:11.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:11.028][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:11.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:11.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:11.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:11.031][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:11.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:11.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:11.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:11.035][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:11.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:11.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:11.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:11.043][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:11.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:11.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:11.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:11.047][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-06-28 16:04:11.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:04:11.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:11.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:11.050][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-06-28 16:04:11.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:04:11.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:11.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:11.054][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-06-28 16:04:11.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:04:11.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:11.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:11.057][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:04:11.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:04:11.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:11.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:11.061][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:04:11.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:04:11.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:11.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:11.064][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:04:11.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:04:11.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:11.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:11.068][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:04:11.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:04:11.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:11.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:11.072][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:04:11.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:04:11.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:11.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:11.075][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:04:11.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:04:11.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:11.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:11.084][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [209892, 0, 209892, C30H50, InChI=1S/C30H50/c1-21(2)11-9-12-22(3)23-15-19-30(8)25-13-14-26-27(4,5)17-10-18-28(26,6)24(25)16-20-29(23,30)7/h11,13,22-24,26H,9-10,12,14-20H2,1-8H3/t22-,23+,24+,26+,28-,29+,30-/m1/s1, ...].
biodb.DEBUG[2025-06-28 16:04:11.085][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-06-28 16:04:11.086][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-06-28 16:04:11.088][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:04:11.089][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:04:11.090][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:04:11.094][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:04:11.095][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:04:11.096][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:04:11.096][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-06-28 16:04:11.099][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.62*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-06-28 16:04:11.101][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-06-28 16:04:11.103][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/013adb879cee6d4257067df9ba0a8c7b.content.
sched.DEBUG[2025-06-28 16:04:11.104][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-06-28 16:04:11.106][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:04:11.107][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:04:11.107][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:04:11.111][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:04:11.112][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:04:11.113][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:04:11.114][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:04:11.115][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:11.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:11.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:11.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:11.118][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:11.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:11.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:11.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:11.122][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:11.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:11.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:11.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:04:11.126][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:04:11.126][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:04:11.127][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:04:11.131][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:04:11.132][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:04:11.132][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:04:11.133][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:04:11.134][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:11.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:11.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:11.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:11.138][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:11.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:11.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:11.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:11.141][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:11.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:11.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:11.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
sched.DEBUG[2025-06-28 16:04:11.146][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.63*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-06-28 16:04:11.148][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-06-28 16:04:11.151][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/d37a10a1f6afae785eb4d1943c254641.content.
sched.DEBUG[2025-06-28 16:04:11.152][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-06-28 16:04:11.154][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:04:11.155][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:04:11.156][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:04:11.159][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:04:11.160][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:04:11.161][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:04:11.162][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:04:11.163][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:11.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:11.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:11.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:11.166][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:11.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:11.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:11.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:11.170][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:11.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:11.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:11.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:04:11.174][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:04:11.174][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:04:11.175][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:04:11.179][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:04:11.180][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:04:11.181][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:04:11.181][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:04:11.182][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:11.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:11.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:11.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:11.186][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:11.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:11.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:11.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:11.190][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:11.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:11.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:11.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:04:11.193][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:04:11.194][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:04:11.195][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:04:11.199][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:04:11.200][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:04:11.200][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:04:11.201][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:04:11.202][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:11.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:11.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:11.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:11.206][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:11.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:11.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:11.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:11.210][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:11.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:11.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:11.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:04:11.213][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-06-28 16:04:11.215][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:04:11.216][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:04:11.216][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:04:11.220][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:04:11.221][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:04:11.222][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:04:11.223][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:04:11.224][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:04:11.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:04:11.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:11.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:11.227][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:04:11.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:04:11.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:11.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:11.231][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:04:11.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:04:11.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:11.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:11.235][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:04:11.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:04:11.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:11.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:11.238][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:11.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:11.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:11.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:11.242][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:11.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:11.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:11.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:11.246][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:04:11.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:04:11.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:11.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:11.249][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:04:11.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:04:11.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:11.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:11.253][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:04:11.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:04:11.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:11.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:11.256][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:04:11.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:04:11.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:11.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:11.260][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:04:11.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:04:11.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:11.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:11.264][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:04:11.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:04:11.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:11.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:11.267][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:11.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:11.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:11.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:11.271][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:11.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:11.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:11.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:11.275][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:11.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:11.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:11.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:11.278][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:11.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:11.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:11.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:11.282][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:11.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:11.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:11.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:11.290][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:11.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:11.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:11.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:11.294][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-06-28 16:04:11.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:04:11.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:11.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:11.297][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-06-28 16:04:11.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:04:11.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:11.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:11.301][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:04:11.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:04:11.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:11.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:11.304][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:04:11.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:04:11.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:11.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:11.308][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:04:11.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:04:11.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:11.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:11.311][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:04:11.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:04:11.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:11.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:11.315][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-06-28 16:04:11.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-06-28 16:04:11.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:11.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:11.319][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-06-28 16:04:11.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-06-28 16:04:11.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:11.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:11.322][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-06-28 16:04:11.323][private$selectFields]
biodb.TRACE[2025-06-28 16:04:11.324][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-06-28 16:04:11.325][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-06-28 16:04:11.326][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-06-28 16:04:11.326][ef$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:04:11.327][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:04:11.328][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:11.329][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:11.330][ef$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:04:11.331][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:04:11.332][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:11.333][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:11.333][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:11.334][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:11.335][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:11.336][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:11.337][ef$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:04:11.338][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:04:11.339][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:11.340][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:11.340][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:04:11.341][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:04:11.342][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:11.343][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:11.344][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:04:11.345][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:04:11.346][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:11.347][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:11.347][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:11.348][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:11.349][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:11.350][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:11.351][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:11.352][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:11.353][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:11.354][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:11.355][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:11.355][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:11.356][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:11.357][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:11.358][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-06-28 16:04:11.359][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:04:11.360][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:11.361][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:11.362][ef$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:04:11.362][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:04:11.363][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:11.364][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:11.365][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:04:11.366][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:04:11.367][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:11.368][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:11.369][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-06-28 16:04:11.370][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-06-28 16:04:11.370][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:11.371][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:11.372][ef$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:04:11.373][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:04:11.374][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:11.375][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:11.376][ef$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:04:11.377][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:04:11.377][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:11.378][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:11.379][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:11.380][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:11.381][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:11.382][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:11.383][ef$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:04:11.384][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:04:11.384][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:11.385][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:11.386][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:04:11.387][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:04:11.388][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:11.389][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:11.390][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:04:11.391][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:04:11.391][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:11.392][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:11.393][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:11.394][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:11.395][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:11.396][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:11.397][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:11.398][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:11.399][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:11.399][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:11.400][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:11.401][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:11.402][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:11.403][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:11.404][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-06-28 16:04:11.405][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:04:11.406][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:11.406][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:11.407][ef$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:04:11.408][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:04:11.409][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:11.410][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:11.411][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:04:11.412][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:04:11.413][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:11.414][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:11.414][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-06-28 16:04:11.415][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-06-28 16:04:11.416][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:11.417][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:11.418][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-06-28 16:04:11.419][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-06-28 16:04:11.420][ef$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:04:11.421][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:04:11.422][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:11.422][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:11.423][ef$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:04:11.424][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:04:11.425][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:11.426][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:11.427][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:11.428][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:11.429][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:11.430][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:11.431][ef$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:04:11.431][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:04:11.432][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:11.433][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:11.434][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:04:11.435][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:04:11.436][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:11.437][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:11.438][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:04:11.439][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:04:11.439][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:11.440][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:11.441][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:11.442][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:11.443][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:11.444][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:11.445][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:11.446][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:11.447][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:11.447][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:11.448][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:11.449][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:11.450][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:11.451][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:11.452][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-06-28 16:04:11.453][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:04:11.454][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:11.455][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:11.456][ef$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:04:11.457][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:04:11.457][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:11.458][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:11.459][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:04:11.460][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:04:11.461][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:11.462][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:11.463][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-06-28 16:04:11.464][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:04:11.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:04:11.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:11.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:11.467][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:04:11.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:04:11.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:11.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:11.471][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:04:11.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:04:11.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:11.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:11.475][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:04:11.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:04:11.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:11.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:11.478][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:04:11.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:04:11.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:11.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:11.482][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:04:11.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:04:11.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:11.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:11.486][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:11.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:11.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:11.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:11.489][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:11.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:11.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:11.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:11.493][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:11.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:11.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:11.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:11.497][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:04:11.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:04:11.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:11.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:11.500][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:04:11.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:04:11.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:11.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:11.504][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:04:11.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:04:11.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:11.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:11.508][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:04:11.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:04:11.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:11.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:11.511][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:04:11.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:04:11.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:11.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:11.515][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:04:11.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:04:11.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:11.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:11.519][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:04:11.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:04:11.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:11.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:11.522][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:04:11.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:04:11.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:11.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:11.526][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:04:11.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:04:11.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:11.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:11.534][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:11.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:11.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:11.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:11.538][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:11.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:11.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:11.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:11.541][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:11.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:11.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:11.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:11.545][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:11.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:11.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:11.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:11.548][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:11.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:11.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:11.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:11.552][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:11.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:11.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:11.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:11.556][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:11.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:11.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:11.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:11.559][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:11.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:11.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:11.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:11.563][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:11.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:11.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:11.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:11.566][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-06-28 16:04:11.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:04:11.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:11.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:11.570][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-06-28 16:04:11.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:04:11.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:11.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:11.574][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-06-28 16:04:11.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:04:11.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:11.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:11.577][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:04:11.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:04:11.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:11.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:11.581][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:04:11.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:04:11.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:11.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:11.584][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:04:11.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:04:11.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:11.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:11.588][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:04:11.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:04:11.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:11.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:11.592][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:04:11.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:04:11.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:11.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:11.595][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:04:11.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:04:11.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:11.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:11.604][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [4781, 0, 4781, C29H40N2O4, InChI=1S/C29H40N2O4/c1-6-18-17-31-10-8-20-14-27(33-3)29(35-5)16-23(20)25(31)12-21(18)11-24-22-15-28(34-4)26(32-2)13-19(22)7-9-30-24/h13-16,18,21,24-25,30H,6-12,17H2,1-5H3/t18-,21-,24+,25-/m0/s1, ...].
biodb.DEBUG[2025-06-28 16:04:11.605][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:04:11.606][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:04:11.607][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:04:11.611][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:04:11.612][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:04:11.613][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:04:11.614][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:04:11.615][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:04:11.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:04:11.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:11.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:11.618][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:04:11.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:04:11.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:11.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:11.622][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:04:11.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:04:11.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:11.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:11.626][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:04:11.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:04:11.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:11.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:11.629][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:11.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:11.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:11.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:11.633][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:11.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:11.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:11.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:11.636][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:04:11.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:04:11.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:11.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:11.640][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:04:11.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:04:11.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:11.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:11.643][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:04:11.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:04:11.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:11.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:11.647][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:04:11.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:04:11.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:11.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:11.651][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:04:11.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:04:11.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:11.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:11.654][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:04:11.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:04:11.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:11.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:11.658][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:11.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:11.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:11.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:11.661][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:11.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:11.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:11.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:11.665][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:11.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:11.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:11.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:11.668][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:11.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:11.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:11.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:11.672][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:11.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:11.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:11.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:11.676][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:11.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:11.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:11.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:11.679][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-06-28 16:04:11.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:04:11.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:11.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:11.683][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-06-28 16:04:11.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:04:11.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:11.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:11.687][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:04:11.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:04:11.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:11.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:11.690][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:04:11.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:04:11.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:11.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:11.694][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:04:11.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:04:11.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:11.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:11.697][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:04:11.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:04:11.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:11.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:11.701][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-06-28 16:04:11.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-06-28 16:04:11.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:11.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:11.705][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-06-28 16:04:11.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-06-28 16:04:11.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:11.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:11.708][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-06-28 16:04:11.709][private$selectFields]
biodb.TRACE[2025-06-28 16:04:11.710][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-06-28 16:04:11.711][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-06-28 16:04:11.712][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-06-28 16:04:11.713][ef$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:04:11.714][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:04:11.715][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:11.715][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:11.716][ef$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:04:11.717][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:04:11.718][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:11.719][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:11.720][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:11.721][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:11.722][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:11.723][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:11.723][ef$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:04:11.724][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:04:11.725][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:11.726][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:11.727][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:04:11.728][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:04:11.729][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:11.730][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:11.731][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:04:11.732][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:04:11.732][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:11.733][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:11.734][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:11.735][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:11.736][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:11.737][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:11.738][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:11.739][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:11.740][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:11.740][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:11.741][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:11.742][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:11.743][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:11.744][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:11.745][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-06-28 16:04:11.746][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:04:11.747][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:11.748][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:11.748][ef$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:04:11.749][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:04:11.750][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:11.751][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:11.752][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:04:11.753][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:04:11.754][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:11.755][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:11.756][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-06-28 16:04:11.757][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-06-28 16:04:11.757][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:11.758][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:11.759][ef$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:04:11.760][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:04:11.761][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:11.762][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:11.763][ef$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:04:11.764][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:04:11.765][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:11.766][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:11.767][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:11.768][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:11.769][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:11.769][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:11.774][ef$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:04:11.776][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:04:11.777][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:11.777][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:11.778][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:04:11.780][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:04:11.780][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:11.781][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:11.782][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:04:11.783][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:04:11.784][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:11.785][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:11.786][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:11.787][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:11.787][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:11.788][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:11.789][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:11.790][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:11.791][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:11.792][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:11.793][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:11.794][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:11.795][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:11.795][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:11.796][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-06-28 16:04:11.797][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:04:11.798][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:11.799][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:11.800][ef$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:04:11.801][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:04:11.802][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:11.802][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:11.803][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:04:11.804][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:04:11.805][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:11.806][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:11.807][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-06-28 16:04:11.808][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-06-28 16:04:11.809][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:11.809][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:11.810][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-06-28 16:04:11.811][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-06-28 16:04:11.812][ef$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:04:11.813][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:04:11.814][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:11.815][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:11.816][ef$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:04:11.817][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:04:11.817][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:11.818][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:11.819][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:11.820][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:11.821][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:11.822][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:11.823][ef$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:04:11.824][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:04:11.825][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:11.825][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:11.826][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:04:11.827][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:04:11.828][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:11.829][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:11.830][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:04:11.831][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:04:11.832][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:11.832][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:11.833][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:11.834][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:11.835][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:11.836][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:11.837][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:11.838][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:11.839][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:11.839][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:11.840][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:11.841][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:11.842][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:11.843][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:11.844][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-06-28 16:04:11.845][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:04:11.846][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:11.847][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:11.847][ef$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:04:11.848][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:04:11.849][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:11.850][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:11.851][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:04:11.852][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:04:11.853][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:11.854][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:11.854][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-06-28 16:04:11.855][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:04:11.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:04:11.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:11.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:11.859][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:04:11.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:04:11.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:11.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:11.863][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:04:11.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:04:11.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:11.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:11.866][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:04:11.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:04:11.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:11.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:11.870][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:04:11.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:04:11.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:11.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:11.873][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:04:11.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:04:11.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:11.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:11.877][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:11.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:11.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:11.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:11.881][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:11.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:11.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:11.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:11.884][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:11.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:11.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:11.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:11.888][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:04:11.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:04:11.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:11.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:11.892][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:04:11.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:04:11.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:11.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:11.895][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:04:11.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:04:11.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:11.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:11.899][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:04:11.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:04:11.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:11.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:11.903][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:04:11.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:04:11.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:11.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:11.906][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:04:11.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:04:11.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:11.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:11.910][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:04:11.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:04:11.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:11.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:11.914][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:04:11.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:04:11.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:11.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:11.917][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:04:11.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:04:11.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:11.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:11.921][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:11.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:11.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:11.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:11.925][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:11.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:11.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:11.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:11.928][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:11.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:11.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:11.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:11.932][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:11.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:11.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:11.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:11.936][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:11.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:11.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:11.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:11.939][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:11.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:11.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:11.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:11.943][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:11.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:11.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:11.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:11.947][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:11.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:11.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:11.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:11.950][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:11.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:11.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:11.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:11.954][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-06-28 16:04:11.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:04:11.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:11.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:11.958][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-06-28 16:04:11.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:04:11.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:11.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:11.961][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-06-28 16:04:11.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:04:11.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:11.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:11.965][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:04:11.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:04:11.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:11.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:11.969][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:04:11.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:04:11.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:11.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:11.973][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:04:11.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:04:11.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:11.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:11.976][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:04:11.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:04:11.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:11.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:11.980][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:04:11.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:04:11.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:11.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:11.984][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:04:11.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:04:11.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:11.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:11.993][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [16587, 0, 16587, C27H44O7, InChI=1S/C27H44O7/c1-23(2,32)9-8-22(31)26(5,33)21-7-11-27(34)16-12-18(28)17-13-19(29)20(30)14-24(17,3)15(16)6-10-25(21,27)4/h12,15,17,19-22,29-34H,6-11,13-14H2,1-5H3/t15-,17-,19+,20-,21-,22+,24+,25+,26+,27+/m0/s1, ...].
biodb.DEBUG[2025-06-28 16:04:11.994][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:04:11.995][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:04:11.996][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:04:12.000][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:04:12.001][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:04:12.001][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:04:12.002][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:04:12.003][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:04:12.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:04:12.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:12.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:12.007][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:04:12.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:04:12.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:12.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:12.011][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:04:12.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:04:12.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:12.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:12.018][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:04:12.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:04:12.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:12.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:12.022][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:12.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:12.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:12.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:12.026][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:12.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:12.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:12.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:12.030][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:04:12.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:04:12.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:12.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:12.033][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:04:12.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:04:12.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:12.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:12.037][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:04:12.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:04:12.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:12.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:12.041][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:04:12.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:04:12.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:12.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:12.044][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:04:12.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:04:12.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:12.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:12.048][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:04:12.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:04:12.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:12.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:12.051][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:12.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:12.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:12.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:12.055][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:12.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:12.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:12.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:12.059][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:12.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:12.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:12.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:12.062][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:12.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:12.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:12.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:12.066][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:12.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:12.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:12.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:12.069][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:12.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:12.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:12.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:12.073][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-06-28 16:04:12.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:04:12.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:12.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:12.076][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-06-28 16:04:12.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:04:12.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:12.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:12.080][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:04:12.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:04:12.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:12.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:12.084][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:04:12.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:04:12.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:12.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:12.087][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:04:12.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:04:12.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:12.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:12.091][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:04:12.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:04:12.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:12.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:12.094][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-06-28 16:04:12.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-06-28 16:04:12.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:12.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:12.098][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-06-28 16:04:12.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-06-28 16:04:12.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:12.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:12.102][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-06-28 16:04:12.102][private$selectFields]
biodb.TRACE[2025-06-28 16:04:12.103][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-06-28 16:04:12.104][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-06-28 16:04:12.105][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-06-28 16:04:12.106][ef$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:04:12.107][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:04:12.108][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:12.108][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:12.109][ef$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:04:12.110][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:04:12.111][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:12.112][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:12.113][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:12.114][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:12.115][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:12.116][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:12.116][ef$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:04:12.117][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:04:12.118][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:12.119][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:12.120][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:04:12.121][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:04:12.122][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:12.123][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:12.123][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:04:12.124][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:04:12.125][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:12.126][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:12.127][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:12.128][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:12.129][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:12.130][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:12.131][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:12.131][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:12.132][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:12.133][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:12.134][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:12.135][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:12.136][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:12.137][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:12.138][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-06-28 16:04:12.139][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:04:12.139][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:12.140][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:12.141][ef$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:04:12.142][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:04:12.143][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:12.144][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:12.145][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:04:12.146][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:04:12.146][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:12.147][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:12.148][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-06-28 16:04:12.149][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-06-28 16:04:12.150][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:12.151][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:12.152][ef$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:04:12.153][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:04:12.154][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:12.154][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:12.155][ef$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:04:12.156][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:04:12.157][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:12.158][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:12.159][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:12.160][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:12.161][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:12.162][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:12.162][ef$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:04:12.163][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:04:12.164][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:12.165][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:12.166][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:04:12.167][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:04:12.168][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:12.169][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:12.170][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:04:12.171][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:04:12.171][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:12.172][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:12.173][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:12.174][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:12.175][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:12.176][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:12.177][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:12.178][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:12.179][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:12.179][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:12.180][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:12.181][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:12.182][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:12.183][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:12.184][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-06-28 16:04:12.185][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:04:12.186][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:12.187][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:12.187][ef$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:04:12.188][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:04:12.189][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:12.190][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:12.191][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:04:12.192][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:04:12.193][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:12.194][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:12.195][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-06-28 16:04:12.195][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-06-28 16:04:12.196][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:12.197][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:12.198][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-06-28 16:04:12.199][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-06-28 16:04:12.200][ef$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:04:12.201][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:04:12.202][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:12.203][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:12.203][ef$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:04:12.204][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:04:12.205][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:12.206][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:12.207][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:12.208][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:12.209][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:12.210][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:12.211][ef$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:04:12.212][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:04:12.212][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:12.213][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:12.214][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:04:12.215][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:04:12.216][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:12.217][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:12.218][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:04:12.219][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:04:12.219][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:12.220][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:12.221][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:12.222][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:12.223][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:12.224][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:12.225][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:12.226][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:12.227][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:12.227][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:12.228][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-06-28 16:04:12.229][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:04:12.230][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:12.231][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:12.232][ef$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:04:12.233][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:04:12.234][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:12.235][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:12.235][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:04:12.236][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:04:12.237][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:12.238][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:12.239][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-06-28 16:04:12.240][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:04:12.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:04:12.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:12.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:12.244][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:04:12.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:04:12.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:12.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:12.247][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:04:12.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:04:12.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:12.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:12.251][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:04:12.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:04:12.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:12.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:12.255][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:04:12.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:04:12.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:12.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:12.262][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:04:12.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:04:12.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:12.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:12.266][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:12.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:12.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:12.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:12.270][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:12.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:12.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:12.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:12.273][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:12.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:12.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:12.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:12.277][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:04:12.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:04:12.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:12.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:12.281][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:04:12.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:04:12.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:12.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:12.284][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:04:12.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:04:12.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:12.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:12.288][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:04:12.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:04:12.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:12.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:12.291][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:04:12.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:04:12.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:12.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:12.295][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:04:12.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:04:12.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:12.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:12.299][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:04:12.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:04:12.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:12.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:12.302][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:04:12.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:04:12.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:12.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:12.306][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:04:12.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:04:12.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:12.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:12.309][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:12.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:12.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:12.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:12.313][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:12.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:12.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:12.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:12.316][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:12.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:12.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:12.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:12.320][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:12.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:12.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:12.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:12.324][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:12.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:12.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:12.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:12.327][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:12.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:12.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:12.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:12.331][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-06-28 16:04:12.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:04:12.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:12.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:12.334][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-06-28 16:04:12.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:04:12.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:12.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:12.338][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-06-28 16:04:12.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:04:12.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:12.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:12.342][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:04:12.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:04:12.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:12.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:12.345][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:04:12.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:04:12.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:12.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:12.349][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:04:12.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:04:12.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:12.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:12.352][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:04:12.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:04:12.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:12.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:12.356][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:04:12.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:04:12.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:12.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:12.360][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:04:12.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:04:12.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:12.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:12.368][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [19804, 0, 19804, C27H44O7, InChI=1S/C27H44O7/c1-23(2,32)8-5-9-26(33,15-28)22-7-11-27(34)17-12-19(29)18-13-20(30)21(31)14-24(18,3)16(17)6-10-25(22,27)4/h12,16,18,20-22,28,30-34H,5-11,13-15H2,1-4H3/t16-,18-,20+,21-,22-,24+,25+,26+,27+/m0/s1, ...].
biodb.DEBUG[2025-06-28 16:04:12.369][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-06-28 16:04:12.370][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-06-28 16:04:12.373][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:04:12.374][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:04:12.374][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:04:12.378][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:04:12.379][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:04:12.380][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:04:12.381][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-06-28 16:04:12.383][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-06-28 16:04:12.386][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-06-28 16:04:12.388][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/618204bc3e9a685033db1d9be9d78d44.content.
sched.DEBUG[2025-06-28 16:04:12.389][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-06-28 16:04:12.391][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:04:12.392][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:04:12.393][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:04:12.396][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:04:12.397][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:04:12.398][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:04:12.399][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:04:12.400][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:12.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:12.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:12.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:12.404][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:12.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:12.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:12.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:12.407][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:12.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:12.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:12.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:04:12.411][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:04:12.412][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:04:12.413][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:04:12.417][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:04:12.417][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:04:12.418][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:04:12.419][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:04:12.420][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:12.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:12.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:12.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:12.424][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:12.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:12.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:12.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:12.427][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:12.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:12.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:12.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:04:12.431][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:04:12.432][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:04:12.433][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:04:12.437][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:04:12.437][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:04:12.438][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:04:12.439][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:04:12.440][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:12.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:12.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:12.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:12.444][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:12.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:12.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:12.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:12.447][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:12.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:12.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:12.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:04:12.451][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:04:12.452][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:04:12.453][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:04:12.456][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:04:12.457][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:04:12.458][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:04:12.459][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:04:12.460][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:12.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:12.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:12.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:12.463][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:12.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:12.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:12.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:12.467][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:12.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:12.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:12.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:04:12.471][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:04:12.472][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:04:12.472][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:04:12.476][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:04:12.477][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:04:12.478][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:04:12.479][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:04:12.480][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:12.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:12.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:12.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:12.483][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:12.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:12.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:12.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:12.487][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:12.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:12.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:12.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:04:12.491][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:04:12.491][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:04:12.492][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:04:12.496][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:04:12.497][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:04:12.498][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:04:12.498][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:04:12.499][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:12.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:12.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:12.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:12.508][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:12.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:12.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:12.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:12.511][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:12.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:12.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:12.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:04:12.515][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:04:12.516][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:04:12.516][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:04:12.520][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:04:12.521][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:04:12.522][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:04:12.522][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:04:12.523][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:12.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:12.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:12.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:12.527][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:12.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:12.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:12.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:12.531][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:12.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:12.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:12.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:04:12.534][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:04:12.535][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:04:12.536][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:04:12.539][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:04:12.540][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:04:12.541][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:04:12.542][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:04:12.543][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:12.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:12.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:12.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:12.546][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:12.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:12.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:12.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:12.550][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:12.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:12.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:12.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
sched.DEBUG[2025-06-28 16:04:12.554][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-06-28 16:04:12.556][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-06-28 16:04:12.558][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/e0540b0a9d3ba75ce1522ce23f76319e.content.
sched.DEBUG[2025-06-28 16:04:12.559][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-06-28 16:04:12.561][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:04:12.562][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:04:12.563][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:04:12.566][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:04:12.567][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:04:12.568][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:04:12.569][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:04:12.570][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:12.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:12.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:12.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:12.573][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:12.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:12.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:12.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:12.577][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:12.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:12.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:12.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:04:12.581][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:04:12.581][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:04:12.582][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:04:12.586][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:04:12.587][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:04:12.587][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:04:12.588][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:04:12.589][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:12.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:12.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:12.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:12.593][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:12.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:12.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:12.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:12.596][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:12.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:12.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:12.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:04:12.600][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:04:12.601][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:04:12.602][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:04:12.605][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:04:12.606][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:04:12.607][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:04:12.608][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:04:12.609][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:12.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:12.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:12.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:12.612][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:12.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:12.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:12.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:12.616][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:12.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:12.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:12.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:04:12.619][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-06-28 16:04:12.621][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:04:12.622][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:04:12.623][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:04:12.626][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:04:12.627][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:04:12.628][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:04:12.629][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:04:12.630][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:04:12.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:04:12.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:12.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:12.633][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:04:12.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:04:12.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:12.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:12.637][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:04:12.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:04:12.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:12.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:12.640][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:04:12.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:04:12.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:12.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:12.644][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:12.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:12.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:12.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:12.648][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:12.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:12.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:12.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:12.651][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:04:12.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:04:12.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:12.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:12.655][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:04:12.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:04:12.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:12.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:12.658][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:04:12.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:04:12.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:12.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:12.662][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:04:12.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:04:12.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:12.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:12.666][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:04:12.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:04:12.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:12.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:12.669][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:04:12.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:04:12.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:12.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:12.673][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:12.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:12.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:12.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:12.676][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:12.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:12.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:12.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:12.680][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:12.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:12.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:12.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:12.684][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:12.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:12.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:12.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:12.687][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:12.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:12.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:12.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:12.691][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:12.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:12.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:12.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:12.695][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-06-28 16:04:12.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:04:12.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:12.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:12.698][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-06-28 16:04:12.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:04:12.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:12.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:12.702][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:04:12.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:04:12.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:12.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:12.705][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:04:12.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:04:12.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:12.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:12.709][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:04:12.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:04:12.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:12.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:12.712][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:04:12.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:04:12.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:12.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:12.716][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-06-28 16:04:12.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-06-28 16:04:12.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:12.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:12.720][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-06-28 16:04:12.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-06-28 16:04:12.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:12.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:12.723][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-06-28 16:04:12.724][private$selectFields]
biodb.TRACE[2025-06-28 16:04:12.725][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-06-28 16:04:12.726][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-06-28 16:04:12.727][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-06-28 16:04:12.728][ef$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:04:12.729][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:04:12.729][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:12.730][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:12.731][ef$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:04:12.732][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:04:12.733][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:12.734][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:12.735][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:12.736][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:12.737][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:12.737][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:12.738][ef$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:04:12.739][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:04:12.740][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:12.741][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:12.742][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:04:12.747][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:04:12.748][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:12.749][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:12.750][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:04:12.751][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:04:12.752][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:12.753][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:12.754][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:12.755][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:12.755][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:12.756][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:12.757][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:12.758][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:12.759][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:12.760][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:12.761][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:12.762][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:12.762][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:12.763][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:12.764][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-06-28 16:04:12.765][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:04:12.766][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:12.767][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:12.768][ef$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:04:12.769][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:04:12.769][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:12.770][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:12.771][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:04:12.772][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:04:12.773][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:12.774][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:12.775][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-06-28 16:04:12.776][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-06-28 16:04:12.776][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:12.777][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:12.778][ef$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:04:12.779][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:04:12.780][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:12.781][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:12.782][ef$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:04:12.783][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:04:12.784][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:12.784][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:12.785][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:12.786][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:12.787][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:12.788][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:12.789][ef$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:04:12.790][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:04:12.791][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:12.791][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:12.792][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:04:12.793][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:04:12.794][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:12.795][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:12.796][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:04:12.797][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:04:12.798][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:12.798][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:12.799][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:12.800][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:12.801][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:12.802][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:12.803][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:12.804][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:12.805][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:12.805][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:12.806][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:12.807][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:12.808][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:12.809][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:12.810][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-06-28 16:04:12.811][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:04:12.812][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:12.812][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:12.813][ef$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:04:12.814][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:04:12.815][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:12.816][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:12.817][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:04:12.818][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:04:12.819][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:12.819][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:12.820][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-06-28 16:04:12.821][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-06-28 16:04:12.822][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:12.823][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:12.824][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-06-28 16:04:12.825][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-06-28 16:04:12.826][ef$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:04:12.827][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:04:12.827][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:12.828][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:12.829][ef$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:04:12.830][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:04:12.831][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:12.832][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:12.833][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:12.834][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:12.834][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:12.835][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:12.836][ef$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:04:12.837][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:04:12.838][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:12.839][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:12.840][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:04:12.841][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:04:12.842][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:12.842][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:12.843][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:04:12.844][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:04:12.845][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:12.846][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:12.847][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:12.848][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:12.849][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:12.849][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:12.850][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:12.851][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:12.852][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:12.853][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:12.854][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:12.855][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:12.856][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:12.856][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:12.857][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-06-28 16:04:12.858][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:04:12.859][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:12.860][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:12.861][ef$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:04:12.862][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:04:12.863][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:12.864][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:12.864][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:04:12.865][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:04:12.866][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:12.867][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:12.868][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-06-28 16:04:12.869][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:04:12.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:04:12.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:12.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:12.873][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:04:12.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:04:12.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:12.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:12.876][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:04:12.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:04:12.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:12.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:12.880][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:04:12.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:04:12.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:12.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:12.883][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:04:12.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:04:12.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:12.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:12.887][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:04:12.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:04:12.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:12.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:12.891][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:12.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:12.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:12.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:12.895][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:12.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:12.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:12.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:12.898][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:12.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:12.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:12.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:12.902][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:04:12.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:04:12.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:12.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:12.905][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:04:12.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:04:12.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:12.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:12.909][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:04:12.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:04:12.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:12.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:12.913][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:04:12.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:04:12.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:12.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:12.916][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:04:12.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:04:12.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:12.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:12.920][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:04:12.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:04:12.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:12.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:12.924][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:04:12.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:04:12.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:12.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:12.927][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:04:12.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:04:12.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:12.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:12.931][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:04:12.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:04:12.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:12.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:12.935][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:12.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:12.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:12.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:12.938][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:12.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:12.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:12.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:12.942][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:12.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:12.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:12.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:12.946][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:12.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:12.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:12.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:12.949][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:12.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:12.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:12.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:12.953][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:12.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:12.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:12.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:12.957][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:12.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:12.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:12.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:12.960][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:12.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:12.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:12.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:12.964][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:12.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:12.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:12.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:12.968][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-06-28 16:04:12.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:04:12.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:12.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:12.971][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-06-28 16:04:12.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:04:12.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:12.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:12.975][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-06-28 16:04:12.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:04:12.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:12.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:12.979][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:04:12.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:04:12.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:12.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:12.982][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:04:12.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:04:12.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:12.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:12.990][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:04:12.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:04:12.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:12.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:12.994][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:04:12.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:04:12.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:12.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:12.998][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:04:12.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:04:13.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:13.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:13.001][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:04:13.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:04:13.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:13.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:13.010][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [7799, 0, 7799, C16H31N2O8P, InChI=1S/C16H28N2O4.H3O4P/c1-5-12(6-2)22-14-9-11(16(20)21-7-3)8-13(17)15(14)18-10(4)19;1-5(2,3)4/h9,12-15H,5-8,17H2,1-4H3,(H,18,19);(H3,1,2,3,4)/t13-,14+,15+;/m0./s1, ...].
biodb.DEBUG[2025-06-28 16:04:13.011][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:04:13.012][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:04:13.013][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:04:13.017][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:04:13.018][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:04:13.019][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:04:13.019][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:04:13.021][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:04:13.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:04:13.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:13.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:13.024][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:04:13.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:04:13.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:13.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:13.028][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:04:13.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:04:13.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:13.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:13.031][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:04:13.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:04:13.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:13.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:13.035][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:13.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:13.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:13.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:13.038][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:13.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:13.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:13.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:13.042][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:04:13.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:04:13.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:13.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:13.045][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:04:13.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:04:13.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:13.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:13.049][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:04:13.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:04:13.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:13.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:13.053][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:04:13.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:04:13.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:13.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:13.056][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:04:13.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:04:13.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:13.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:13.060][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:04:13.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:04:13.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:13.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:13.063][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:13.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:13.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:13.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:13.067][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:13.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:13.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:13.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:13.070][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:13.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:13.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:13.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:13.074][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:13.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:13.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:13.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:13.077][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:13.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:13.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:13.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:13.081][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:13.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:13.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:13.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:13.085][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-06-28 16:04:13.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:04:13.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:13.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:13.088][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-06-28 16:04:13.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:04:13.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:13.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:13.092][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:04:13.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:04:13.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:13.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:13.095][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:04:13.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:04:13.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:13.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:13.099][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:04:13.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:04:13.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:13.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:13.103][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:04:13.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:04:13.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:13.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:13.106][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-06-28 16:04:13.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-06-28 16:04:13.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:13.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:13.110][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-06-28 16:04:13.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-06-28 16:04:13.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:13.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:13.113][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-06-28 16:04:13.114][private$selectFields]
biodb.TRACE[2025-06-28 16:04:13.115][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-06-28 16:04:13.116][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-06-28 16:04:13.117][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-06-28 16:04:13.118][ef$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:04:13.119][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:04:13.119][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:13.120][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:13.121][ef$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:04:13.122][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:04:13.123][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:13.124][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:13.125][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:13.126][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:13.127][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:13.127][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:13.128][ef$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:04:13.129][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:04:13.130][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:13.131][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:13.132][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:04:13.133][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:04:13.134][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:13.135][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:13.135][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:04:13.136][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:04:13.137][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:13.138][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:13.139][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:13.140][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:13.141][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:13.142][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:13.143][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:13.144][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:13.144][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:13.145][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:13.146][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:13.147][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:13.148][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:13.149][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:13.150][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-06-28 16:04:13.151][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:04:13.152][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:13.152][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:13.153][ef$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:04:13.154][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:04:13.155][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:13.156][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:13.157][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:04:13.158][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:04:13.159][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:13.160][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:13.160][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-06-28 16:04:13.161][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-06-28 16:04:13.162][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:13.163][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:13.164][ef$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:04:13.165][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:04:13.166][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:13.167][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:13.168][ef$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:04:13.169][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:04:13.169][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:13.170][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:13.171][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:13.172][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:13.173][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:13.174][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:13.175][ef$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:04:13.176][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:04:13.177][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:13.177][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:13.178][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:04:13.179][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:04:13.180][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:13.181][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:13.182][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:04:13.183][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:04:13.184][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:13.185][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:13.185][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:13.186][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:13.187][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:13.188][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:13.189][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:13.190][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:13.191][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:13.192][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:13.193][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:13.193][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:13.194][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:13.195][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:13.196][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-06-28 16:04:13.197][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:04:13.198][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:13.199][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:13.200][ef$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:04:13.201][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:04:13.202][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:13.202][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:13.203][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:04:13.204][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:04:13.205][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:13.206][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:13.207][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-06-28 16:04:13.208][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-06-28 16:04:13.209][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:13.209][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:13.210][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-06-28 16:04:13.211][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-06-28 16:04:13.212][ef$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:04:13.213][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:04:13.214][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:13.215][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:13.216][ef$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:04:13.217][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:04:13.218][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:13.218][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:13.219][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:13.220][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:13.221][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:13.222][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:13.223][ef$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:04:13.224][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:04:13.225][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:13.229][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:13.231][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:04:13.232][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:04:13.233][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:13.233][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:13.234][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:04:13.235][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:04:13.236][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:13.237][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:13.238][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:13.239][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:13.240][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:13.240][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:13.241][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:13.242][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:13.243][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:13.244][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:13.245][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-06-28 16:04:13.246][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:04:13.247][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:13.248][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:13.248][ef$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:04:13.249][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:04:13.250][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:13.251][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:13.252][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:04:13.253][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:04:13.254][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:13.255][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:13.255][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-06-28 16:04:13.256][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:04:13.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:04:13.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:13.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:13.260][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:04:13.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:04:13.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:13.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:13.264][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:04:13.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:04:13.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:13.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:13.267][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:04:13.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:04:13.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:13.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:13.271][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:04:13.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:04:13.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:13.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:13.274][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:04:13.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:04:13.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:13.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:13.278][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:13.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:13.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:13.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:13.282][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:13.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:13.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:13.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:13.285][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:13.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:13.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:13.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:13.289][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:04:13.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:04:13.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:13.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:13.292][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:04:13.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:04:13.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:13.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:13.296][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:04:13.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:04:13.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:13.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:13.300][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:04:13.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:04:13.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:13.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:13.303][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:04:13.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:04:13.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:13.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:13.307][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:04:13.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:04:13.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:13.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:13.310][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:04:13.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:04:13.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:13.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:13.314][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:04:13.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:04:13.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:13.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:13.317][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:04:13.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:04:13.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:13.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:13.321][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:13.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:13.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:13.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:13.325][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:13.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:13.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:13.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:13.328][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:13.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:13.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:13.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:13.332][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:13.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:13.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:13.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:13.335][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:13.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:13.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:13.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:13.339][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:13.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:13.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:13.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:13.343][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-06-28 16:04:13.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:04:13.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:13.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:13.346][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-06-28 16:04:13.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:04:13.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:13.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:13.350][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-06-28 16:04:13.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:04:13.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:13.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:13.354][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:04:13.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:04:13.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:13.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:13.357][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:04:13.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:04:13.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:13.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:13.361][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:04:13.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:04:13.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:13.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:13.365][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:04:13.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:04:13.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:13.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:13.368][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:04:13.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:04:13.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:13.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:13.372][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:04:13.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:04:13.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:13.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:13.381][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [71954, 0, 71954, C18H21F3N6O2, InChI=1S/C18H21F3N6O2/c19-18(20,21)13-9-15(22)23-11-12(13)14-10-16(26-1-5-28-6-2-26)25-17(24-14)27-3-7-29-8-4-27/h9-11H,1-8H2,(H2,22,23), ...].
biodb.DEBUG[2025-06-28 16:04:13.382][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:04:13.382][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:04:13.383][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:04:13.387][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:04:13.388][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:04:13.389][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:04:13.390][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:04:13.391][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:04:13.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:04:13.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:13.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:13.394][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:04:13.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:04:13.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:13.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:13.398][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:04:13.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:04:13.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:13.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:13.402][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:04:13.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:04:13.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:13.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:13.405][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:13.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:13.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:13.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:13.409][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:13.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:13.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:13.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:13.413][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:04:13.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:04:13.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:13.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:13.416][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:04:13.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:04:13.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:13.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:13.420][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:04:13.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:04:13.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:13.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:13.423][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:04:13.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:04:13.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:13.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:13.427][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:04:13.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:04:13.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:13.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:13.430][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:04:13.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:04:13.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:13.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:13.434][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:13.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:13.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:13.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:13.438][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:13.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:13.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:13.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:13.441][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:13.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:13.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:13.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:13.445][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:13.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:13.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:13.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:13.448][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:13.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:13.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:13.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:13.452][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:13.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:13.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:13.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:13.456][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-06-28 16:04:13.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:04:13.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:13.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:13.459][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-06-28 16:04:13.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:04:13.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:13.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:13.463][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:04:13.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:04:13.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:13.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:13.467][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:04:13.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:04:13.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:13.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:13.474][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:04:13.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:04:13.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:13.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:13.478][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:04:13.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:04:13.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:13.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:13.482][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-06-28 16:04:13.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-06-28 16:04:13.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:13.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:13.485][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-06-28 16:04:13.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-06-28 16:04:13.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:13.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:13.489][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-06-28 16:04:13.489][private$selectFields]
biodb.TRACE[2025-06-28 16:04:13.490][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-06-28 16:04:13.491][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-06-28 16:04:13.492][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-06-28 16:04:13.493][ef$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:04:13.494][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:04:13.495][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:13.496][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:13.496][ef$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:04:13.497][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:04:13.498][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:13.499][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:13.500][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:13.501][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:13.502][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:13.503][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:13.503][ef$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:04:13.504][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:04:13.505][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:13.506][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:13.507][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:04:13.508][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:04:13.509][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:13.510][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:13.510][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:04:13.511][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:04:13.512][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:13.513][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:13.514][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:13.515][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:13.516][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:13.517][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:13.517][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:13.518][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:13.519][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:13.520][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:13.521][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:13.522][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:13.523][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:13.524][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:13.524][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-06-28 16:04:13.525][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:04:13.526][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:13.527][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:13.528][ef$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:04:13.529][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:04:13.530][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:13.531][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:13.531][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:04:13.532][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:04:13.533][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:13.534][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:13.535][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-06-28 16:04:13.536][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-06-28 16:04:13.537][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:13.538][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:13.538][ef$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:04:13.539][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:04:13.540][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:13.541][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:13.542][ef$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:04:13.543][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:04:13.544][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:13.545][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:13.545][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:13.546][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:13.547][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:13.548][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:13.549][ef$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:04:13.550][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:04:13.551][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:13.552][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:13.552][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:04:13.553][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:04:13.554][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:13.555][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:13.556][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:04:13.557][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:04:13.558][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:13.559][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:13.560][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:13.560][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:13.561][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:13.562][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:13.563][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:13.564][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:13.565][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:13.566][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:13.567][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:13.567][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:13.568][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:13.569][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:13.570][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-06-28 16:04:13.571][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:04:13.572][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:13.573][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:13.574][ef$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:04:13.574][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:04:13.575][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:13.576][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:13.577][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:04:13.578][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:04:13.579][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:13.580][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:13.581][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-06-28 16:04:13.582][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-06-28 16:04:13.582][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:13.583][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:13.584][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-06-28 16:04:13.585][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-06-28 16:04:13.586][ef$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:04:13.587][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:04:13.588][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:13.589][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:13.589][ef$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:04:13.590][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:04:13.591][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:13.592][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:13.593][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:13.594][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:13.595][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:13.596][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:13.596][ef$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:04:13.597][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:04:13.598][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:13.599][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:13.600][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:04:13.601][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:04:13.602][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:13.603][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:13.604][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:04:13.604][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:04:13.605][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:13.606][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:13.607][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:13.608][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:13.609][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:13.610][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:13.611][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:13.612][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:13.613][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:13.613][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:13.614][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-06-28 16:04:13.615][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:04:13.616][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:13.617][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:13.618][ef$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:04:13.619][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:04:13.620][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:13.620][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:13.621][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:04:13.622][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:04:13.623][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:13.624][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:13.625][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-06-28 16:04:13.626][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:04:13.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:04:13.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:13.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:13.630][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:04:13.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:04:13.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:13.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:13.633][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:04:13.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:04:13.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:13.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:13.637][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:04:13.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:04:13.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:13.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:13.640][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:04:13.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:04:13.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:13.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:13.644][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:04:13.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:04:13.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:13.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:13.648][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:13.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:13.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:13.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:13.651][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:13.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:13.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:13.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:13.655][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:13.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:13.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:13.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:13.659][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:04:13.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:04:13.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:13.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:13.662][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:04:13.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:04:13.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:13.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:13.666][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:04:13.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:04:13.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:13.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:13.670][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:04:13.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:04:13.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:13.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:13.673][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:04:13.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:04:13.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:13.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:13.677][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:04:13.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:04:13.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:13.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:13.681][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:04:13.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:04:13.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:13.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:13.684][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:04:13.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:04:13.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:13.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:13.688][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:04:13.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:04:13.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:13.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:13.691][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:13.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:13.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:13.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:13.695][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:13.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:13.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:13.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:13.699][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:13.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:13.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:13.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:13.702][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:13.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:13.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:13.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:13.706][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:13.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:13.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:13.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:13.714][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:13.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:13.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:13.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:13.718][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-06-28 16:04:13.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:04:13.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:13.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:13.721][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-06-28 16:04:13.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:04:13.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:13.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:13.725][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-06-28 16:04:13.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:04:13.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:13.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:13.728][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:04:13.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:04:13.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:13.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:13.732][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:04:13.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:04:13.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:13.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:13.736][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:04:13.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:04:13.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:13.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:13.739][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:04:13.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:04:13.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:13.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:13.743][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:04:13.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:04:13.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:13.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:13.746][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:04:13.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:04:13.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:13.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:13.755][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [197612, 0, 197612, C18H18O9S, InChI=1S/C18H18O9S/c1-7-3-9(19)13-11(4-7)27-16-8(14(13)21)5-12(28-16)18(25,17(24)26-2)6-10(20)15(22)23/h3-4,10,12,19-20,25H,5-6H2,1-2H3,(H,22,23)/t10-,12+,18?/m1/s1, ...].
biodb.DEBUG[2025-06-28 16:04:13.756][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-06-28 16:04:13.757][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2025-06-28 16:04:13.762][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:13.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:13.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:13.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:13.766][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:13.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:13.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:13.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:13.769][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:13.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:13.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:13.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:13.773][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:13.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:13.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:13.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:13.776][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:13.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:13.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:13.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:13.780][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:13.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:13.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:13.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:13.783][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:13.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:13.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:13.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:13.787][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:13.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:13.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:13.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:13.791][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:13.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:13.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:13.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:13.794][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:13.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:13.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:13.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:13.798][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:13.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:13.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:13.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:13.801][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:13.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:13.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:13.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:04:13.807][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:04:13.808][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:04:13.809][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:04:13.813][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:04:13.813][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:04:13.814][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:04:13.815][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-06-28 16:04:13.817][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-06-28 16:04:13.820][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-06-28 16:04:13.821][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/2e865a03592d6effdf242ff63104f35a.content.
sched.DEBUG[2025-06-28 16:04:13.822][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
sched.DEBUG[2025-06-28 16:04:13.825][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-06-28 16:04:13.827][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-06-28 16:04:13.829][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/f0c73645ca32490f91d503a462d812b2.content.
sched.DEBUG[2025-06-28 16:04:13.830][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-06-28 16:04:13.832][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:04:13.833][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:04:13.834][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:04:13.838][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:04:13.839][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:04:13.839][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:04:13.840][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:04:13.841][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:13.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:13.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:13.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:13.845][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:13.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:13.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:13.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:13.848][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:13.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:13.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:13.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:04:13.852][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:04:13.853][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:04:13.854][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:04:13.858][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:04:13.858][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:04:13.859][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:04:13.860][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:04:13.861][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:13.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:13.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:13.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:13.865][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:13.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:13.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:13.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:13.868][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:13.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:13.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:13.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:04:13.872][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:04:13.873][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:04:13.874][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:04:13.877][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:04:13.878][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:04:13.879][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:04:13.880][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:04:13.881][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:13.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:13.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:13.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:13.885][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:13.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:13.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:13.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:13.888][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:13.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:13.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:13.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:04:13.892][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-06-28 16:04:13.893][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:04:13.894][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:04:13.895][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:04:13.899][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:04:13.900][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:04:13.900][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:04:13.901][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:04:13.902][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:04:13.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:04:13.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:13.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:13.906][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:04:13.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:04:13.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:13.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:13.909][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:04:13.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:04:13.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:13.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:13.913][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:04:13.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:04:13.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:13.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:13.917][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:13.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:13.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:13.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:13.920][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:13.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:13.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:13.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:13.924][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:04:13.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:04:13.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:13.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:13.927][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:04:13.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:04:13.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:13.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:13.931][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:04:13.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:04:13.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:13.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:13.935][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:04:13.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:04:13.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:13.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:13.938][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:04:13.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:04:13.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:13.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:13.942][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:04:13.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:04:13.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:13.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:13.946][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:13.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:13.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:13.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:13.949][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:13.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:13.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:13.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:13.957][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:13.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:13.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:13.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:13.961][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:13.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:13.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:13.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:13.965][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:13.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:13.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:13.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:13.968][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:13.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:13.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:13.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:13.972][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-06-28 16:04:13.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:04:13.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:13.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:13.975][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-06-28 16:04:13.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:04:13.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:13.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:13.979][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:04:13.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:04:13.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:13.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:13.982][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:04:13.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:04:13.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:13.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:13.986][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:04:13.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:04:13.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:13.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:13.989][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:04:13.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:04:13.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:13.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:13.993][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-06-28 16:04:13.994][private$selectFields]
biodb.TRACE[2025-06-28 16:04:13.994][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-06-28 16:04:13.995][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-06-28 16:04:13.996][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-06-28 16:04:13.997][ef$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:04:13.998][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:04:13.999][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:14.000][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:14.001][ef$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:04:14.002][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:04:14.002][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:14.003][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:14.004][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:14.005][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:14.006][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:14.007][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:14.008][ef$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:04:14.009][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:04:14.009][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:14.010][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:14.011][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:04:14.012][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:04:14.013][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:14.014][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:14.015][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:04:14.016][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:04:14.016][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:14.017][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:14.018][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:14.019][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:14.020][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:14.021][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:14.022][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:14.023][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:14.023][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:14.024][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:14.025][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:14.026][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:14.027][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:14.028][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:14.029][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-06-28 16:04:14.030][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:04:14.030][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:14.031][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:14.032][ef$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:04:14.033][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:04:14.034][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:14.035][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:14.036][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:04:14.037][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:04:14.038][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:14.038][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:14.039][ef$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:04:14.040][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:04:14.041][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:14.042][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:14.043][ef$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:04:14.044][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:04:14.045][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:14.045][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:14.046][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:14.047][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:14.048][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:14.049][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:14.050][ef$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:04:14.051][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:04:14.052][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:14.052][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:14.053][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:04:14.054][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:04:14.055][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:14.056][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:14.057][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:04:14.058][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:04:14.059][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:14.059][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:14.060][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:14.061][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:14.062][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:14.063][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:14.064][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:14.065][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:14.066][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:14.067][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:14.067][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:14.068][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:14.069][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:14.070][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:14.071][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-06-28 16:04:14.072][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:04:14.073][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:14.074][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:14.074][ef$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:04:14.075][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:04:14.076][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:14.077][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:14.078][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:04:14.079][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:04:14.080][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:14.081][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:14.082][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-06-28 16:04:14.082][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-06-28 16:04:14.083][ef$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:04:14.084][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:04:14.085][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:14.086][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:14.087][ef$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:04:14.088][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:04:14.089][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:14.089][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:14.090][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:14.091][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:14.092][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:14.093][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:14.094][ef$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:04:14.095][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:04:14.096][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:14.097][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:14.098][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:04:14.098][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:04:14.099][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:14.100][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:14.101][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:04:14.102][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:04:14.103][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:14.104][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:14.105][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:14.106][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:14.106][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:14.107][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:14.108][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:14.109][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:14.110][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:14.111][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:14.112][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:14.113][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:14.114][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:14.114][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:14.115][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-06-28 16:04:14.116][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:04:14.117][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:14.118][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:14.119][ef$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:04:14.120][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:04:14.121][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:14.122][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:14.122][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:04:14.123][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:04:14.124][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:14.125][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:14.126][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-06-28 16:04:14.127][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:04:14.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:04:14.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:14.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:14.131][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:04:14.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:04:14.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:14.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:14.134][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:04:14.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:04:14.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:14.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:14.138][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:04:14.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:04:14.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:14.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:14.141][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:04:14.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:04:14.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:14.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:14.145][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:04:14.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:04:14.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:14.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:14.149][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:14.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:14.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:14.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:14.152][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:14.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:14.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:14.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:14.156][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:14.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:14.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:14.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:14.160][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:04:14.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:04:14.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:14.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:14.163][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:04:14.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:04:14.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:14.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:14.167][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:04:14.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:04:14.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:14.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:14.171][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:04:14.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:04:14.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:14.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:14.174][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:04:14.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:04:14.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:14.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:14.178][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:04:14.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:04:14.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:14.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:14.182][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:04:14.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:04:14.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:14.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:14.185][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:04:14.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:04:14.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:14.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:14.189][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:04:14.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:04:14.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:14.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:14.206][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:14.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:14.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:14.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:14.209][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:14.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:14.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:14.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:14.213][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:14.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:14.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:14.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:14.216][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:14.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:14.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:14.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:14.220][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:14.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:14.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:14.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:14.223][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:14.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:14.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:14.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:14.227][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:14.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:14.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:14.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:14.231][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:14.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:14.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:14.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:14.234][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:14.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:14.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:14.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:14.238][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-06-28 16:04:14.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:04:14.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:14.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:14.241][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-06-28 16:04:14.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:04:14.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:14.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:14.245][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-06-28 16:04:14.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:04:14.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:14.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:14.249][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:04:14.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:04:14.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:14.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:14.252][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:04:14.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:04:14.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:14.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:14.256][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:04:14.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:04:14.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:14.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:14.259][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:04:14.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:04:14.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:14.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:14.263][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:04:14.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:04:14.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:14.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:14.266][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:04:14.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:04:14.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:14.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:14.276][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [4648, 0, 4648, C30H50, InChI=1S/C30H50/c1-20(2)21-12-17-27(5)22(21)13-18-29(7)24(27)10-11-25-28(6)16-9-15-26(3,4)23(28)14-19-30(25,29)8/h21-25H,1,9-19H2,2-8H3/t21-,22+,23+,24-,25-,27+,28+,29-,30-/m1/s1, ...].
biodb.DEBUG[2025-06-28 16:04:14.277][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:04:14.277][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:04:14.278][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:04:14.282][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:04:14.283][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:04:14.284][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:04:14.285][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:04:14.286][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:04:14.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:04:14.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:14.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:14.289][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:04:14.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:04:14.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:14.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:14.293][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:04:14.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:04:14.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:14.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:14.296][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:04:14.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:04:14.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:14.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:14.300][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:14.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:14.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:14.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:14.303][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:14.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:14.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:14.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:14.307][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:04:14.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:04:14.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:14.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:14.311][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:04:14.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:04:14.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:14.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:14.314][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:04:14.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:04:14.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:14.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:14.318][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:04:14.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:04:14.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:14.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:14.321][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:04:14.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:04:14.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:14.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:14.325][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:04:14.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:04:14.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:14.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:14.328][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:14.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:14.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:14.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:14.332][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:14.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:14.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:14.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:14.336][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:14.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:14.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:14.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:14.339][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:14.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:14.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:14.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:14.343][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:14.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:14.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:14.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:14.346][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:14.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:14.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:14.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:14.350][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-06-28 16:04:14.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:04:14.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:14.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:14.354][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-06-28 16:04:14.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:04:14.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:14.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:14.357][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:04:14.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:04:14.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:14.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:14.361][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:04:14.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:04:14.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:14.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:14.365][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:04:14.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:04:14.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:14.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:14.368][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:04:14.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:04:14.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:14.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:14.372][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-06-28 16:04:14.373][private$selectFields]
biodb.TRACE[2025-06-28 16:04:14.374][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-06-28 16:04:14.374][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-06-28 16:04:14.375][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-06-28 16:04:14.376][ef$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:04:14.377][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:04:14.378][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:14.379][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:14.380][ef$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:04:14.381][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:04:14.382][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:14.383][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:14.383][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:14.384][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:14.385][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:14.386][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:14.387][ef$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:04:14.388][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:04:14.389][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:14.390][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:14.391][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:04:14.392][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:04:14.392][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:14.393][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:14.394][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:04:14.395][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:04:14.396][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:14.397][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:14.398][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:14.399][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:14.400][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:14.401][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:14.401][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:14.402][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:14.403][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:14.404][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:14.405][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:14.406][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:14.407][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:14.408][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:14.409][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-06-28 16:04:14.410][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:04:14.410][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:14.411][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:14.412][ef$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:04:14.413][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:04:14.414][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:14.415][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:14.416][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:04:14.417][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:04:14.418][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:14.419][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:14.419][ef$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:04:14.420][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:04:14.421][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:14.422][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:14.423][ef$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:04:14.424][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:04:14.425][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:14.426][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:14.427][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:14.428][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:14.428][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:14.429][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:14.430][ef$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:04:14.431][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:04:14.432][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:14.433][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:14.434][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:04:14.435][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:04:14.436][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:14.437][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:14.437][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:04:14.438][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:04:14.439][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:14.440][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:14.441][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:14.446][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:14.447][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:14.448][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:14.449][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:14.449][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:14.450][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:14.451][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:14.452][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:14.453][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:14.454][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:14.455][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:14.456][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-06-28 16:04:14.457][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:04:14.457][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:14.458][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:14.459][ef$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:04:14.460][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:04:14.461][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:14.462][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:14.463][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:04:14.463][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:04:14.464][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:14.465][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:14.466][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-06-28 16:04:14.467][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-06-28 16:04:14.468][ef$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:04:14.469][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:04:14.470][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:14.470][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:14.471][ef$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:04:14.472][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:04:14.473][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:14.474][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:14.475][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:14.476][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:14.477][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:14.477][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:14.478][ef$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:04:14.479][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:04:14.480][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:14.481][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:14.482][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:04:14.483][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:04:14.484][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:14.484][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:14.485][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:04:14.486][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:04:14.487][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:14.488][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:14.489][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:14.490][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:14.491][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:14.491][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:14.492][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:14.493][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:14.494][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:14.495][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:14.496][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:14.497][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:14.498][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:14.498][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:14.499][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-06-28 16:04:14.500][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:04:14.501][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:14.502][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:14.503][ef$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:04:14.504][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:04:14.505][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:14.505][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:14.506][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:04:14.507][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:04:14.508][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:14.509][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:14.510][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-06-28 16:04:14.511][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:04:14.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:04:14.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:14.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:14.514][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:04:14.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:04:14.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:14.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:14.518][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:04:14.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:04:14.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:14.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:14.522][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:04:14.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:04:14.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:14.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:14.525][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:04:14.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:04:14.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:14.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:14.529][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:04:14.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:04:14.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:14.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:14.533][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:14.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:14.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:14.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:14.536][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:14.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:14.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:14.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:14.540][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:14.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:14.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:14.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:14.543][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:04:14.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:04:14.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:14.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:14.547][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:04:14.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:04:14.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:14.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:14.551][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:04:14.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:04:14.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:14.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:14.554][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:04:14.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:04:14.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:14.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:14.558][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:04:14.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:04:14.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:14.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:14.561][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:04:14.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:04:14.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:14.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:14.565][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:04:14.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:04:14.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:14.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:14.569][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:04:14.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:04:14.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:14.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:14.572][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:04:14.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:04:14.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:14.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:14.576][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:14.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:14.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:14.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:14.580][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:14.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:14.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:14.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:14.583][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:14.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:14.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:14.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:14.587][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:14.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:14.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:14.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:14.591][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:14.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:14.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:14.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:14.594][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:14.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:14.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:14.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:14.598][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:14.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:14.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:14.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:14.602][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:14.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:14.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:14.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:14.605][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:14.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:14.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:14.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:14.609][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-06-28 16:04:14.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:04:14.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:14.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:14.613][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-06-28 16:04:14.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:04:14.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:14.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:14.616][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-06-28 16:04:14.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:04:14.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:14.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:14.620][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:04:14.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:04:14.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:14.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:14.624][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:04:14.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:04:14.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:14.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:14.627][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:04:14.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:04:14.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:14.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:14.631][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:04:14.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:04:14.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:14.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:14.635][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:04:14.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:04:14.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:14.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:14.638][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:04:14.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:04:14.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:14.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:14.648][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [15440, 0, 15440, C30H50, InChI=1S/C30H50/c1-25(2)15-11-19-29(7)23-13-21-27(5)17-9-10-18-28(6)22-14-24-30(8)20-12-16-26(3)4/h15-18,23-24H,9-14,19-22H2,1-8H3/b27-17+,28-18+,29-23+,30-24+, ...].
biodb.DEBUG[2025-06-28 16:04:14.648][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:04:14.649][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:04:14.650][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:04:14.654][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:04:14.655][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:04:14.656][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:04:14.657][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:04:14.658][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:04:14.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:04:14.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:14.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:14.662][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:04:14.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:04:14.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:14.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:14.665][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:04:14.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:04:14.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:14.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:14.669][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:04:14.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:04:14.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:14.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:14.673][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:14.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:14.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:14.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:14.676][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:14.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:14.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:14.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:14.680][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:04:14.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:04:14.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:14.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:14.688][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:04:14.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:04:14.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:14.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:14.692][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:04:14.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:04:14.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:14.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:14.696][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:04:14.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:04:14.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:14.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:14.699][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:04:14.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:04:14.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:14.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:14.703][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:04:14.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:04:14.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:14.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:14.706][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:14.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:14.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:14.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:14.710][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:14.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:14.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:14.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:14.714][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:14.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:14.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:14.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:14.717][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:14.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:14.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:14.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:14.721][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:14.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:14.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:14.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:14.724][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:14.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:14.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:14.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:14.728][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-06-28 16:04:14.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:04:14.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:14.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:14.732][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-06-28 16:04:14.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:04:14.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:14.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:14.735][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:04:14.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:04:14.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:14.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:14.739][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:04:14.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:04:14.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:14.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:14.742][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:04:14.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:04:14.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:14.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:14.746][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:04:14.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:04:14.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:14.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:14.749][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-06-28 16:04:14.750][private$selectFields]
biodb.TRACE[2025-06-28 16:04:14.751][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-06-28 16:04:14.752][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-06-28 16:04:14.753][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-06-28 16:04:14.754][ef$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:04:14.755][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:04:14.756][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:14.757][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:14.757][ef$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:04:14.758][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:04:14.759][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:14.760][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:14.761][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:14.762][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:14.763][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:14.764][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:14.765][ef$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:04:14.765][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:04:14.766][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:14.767][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:14.768][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:04:14.769][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:04:14.770][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:14.771][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:14.772][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:04:14.773][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:04:14.773][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:14.774][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:14.775][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:14.776][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:14.777][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:14.778][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:14.779][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:14.780][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:14.781][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:14.781][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:14.782][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:14.783][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:14.784][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:14.785][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:14.786][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-06-28 16:04:14.787][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:04:14.788][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:14.788][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:14.789][ef$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:04:14.790][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:04:14.791][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:14.792][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:14.793][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:04:14.794][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:04:14.795][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:14.796][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:14.797][ef$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:04:14.797][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:04:14.798][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:14.799][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:14.800][ef$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:04:14.801][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:04:14.802][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:14.803][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:14.804][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:14.805][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:14.806][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:14.806][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:14.807][ef$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:04:14.808][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:04:14.809][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:14.810][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:14.811][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:04:14.812][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:04:14.813][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:14.813][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:14.814][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:04:14.815][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:04:14.816][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:14.817][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:14.818][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:14.819][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:14.820][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:14.821][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:14.821][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:14.822][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:14.823][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:14.824][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:14.825][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:14.826][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:14.827][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:14.828][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:14.829][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-06-28 16:04:14.830][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:04:14.831][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:14.831][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:14.832][ef$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:04:14.833][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:04:14.834][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:14.835][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:14.836][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:04:14.837][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:04:14.838][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:14.839][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:14.840][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-06-28 16:04:14.840][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-06-28 16:04:14.841][ef$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:04:14.842][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:04:14.843][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:14.844][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:14.845][ef$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:04:14.846][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:04:14.847][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:14.848][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:14.849][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:14.850][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:14.850][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:14.851][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:14.852][ef$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:04:14.853][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:04:14.854][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:14.855][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:14.856][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:04:14.857][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:04:14.858][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:14.858][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:14.859][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:04:14.860][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:04:14.861][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:14.862][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:14.863][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:14.864][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:14.865][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:14.866][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:14.866][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:14.867][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:14.868][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:14.869][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:14.870][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-06-28 16:04:14.871][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:04:14.872][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:14.873][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:14.874][ef$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:04:14.875][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:04:14.875][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:14.876][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:14.877][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:04:14.878][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:04:14.879][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:14.880][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:14.881][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-06-28 16:04:14.882][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:04:14.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:04:14.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:14.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:14.885][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:04:14.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:04:14.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:14.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:14.889][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:04:14.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:04:14.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:14.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:14.893][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:04:14.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:04:14.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:14.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:14.896][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:04:14.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:04:14.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:14.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:14.900][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:04:14.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:04:14.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:14.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:14.904][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:14.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:14.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:14.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:14.907][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:14.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:14.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:14.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:14.911][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:14.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:14.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:14.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:14.915][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:04:14.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:04:14.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:14.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:14.919][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:04:14.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:04:14.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:14.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:14.922][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:04:14.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:04:14.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:14.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:14.926][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:04:14.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:04:14.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:14.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:14.934][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:04:14.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:04:14.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:14.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:14.938][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:04:14.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:04:14.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:14.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:14.942][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:04:14.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:04:14.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:14.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:14.945][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:04:14.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:04:14.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:14.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:14.949][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:04:14.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:04:14.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:14.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:14.953][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:14.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:14.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:14.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:14.956][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:14.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:14.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:14.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:14.960][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:14.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:14.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:14.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:14.964][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:14.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:14.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:14.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:14.967][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:14.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:14.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:14.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:14.971][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:14.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:14.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:14.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:14.974][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-06-28 16:04:14.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:04:14.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:14.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:14.978][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-06-28 16:04:14.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:04:14.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:14.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:14.982][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-06-28 16:04:14.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:04:14.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:14.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:14.985][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:04:14.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:04:14.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:14.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:14.989][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:04:14.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:04:14.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:14.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:14.992][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:04:14.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:04:14.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:14.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:14.996][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:04:14.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:04:14.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:14.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:15.000][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:04:15.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:04:15.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:15.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:15.003][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:04:15.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:04:15.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:15.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:15.012][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [62447, 0, 62447, C30H50, InChI=1S/C30H50/c1-21(2)11-9-12-22(3)23-15-19-29(7)24(23)13-14-26-28(6)18-10-17-27(4,5)25(28)16-20-30(26,29)8/h11,23-26H,3,9-10,12-20H2,1-2,4-8H3/t23-,24-,25+,26-,28+,29-,30-/m1/s1, ...].
biodb.DEBUG[2025-06-28 16:04:15.013][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-06-28 16:04:15.014][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-06-28 16:04:15.017][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:04:15.017][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:04:15.018][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:04:15.022][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:04:15.023][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:04:15.024][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:04:15.025][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-06-28 16:04:15.027][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.29*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-06-28 16:04:15.030][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-06-28 16:04:15.032][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/aad5aa7c63b98774a5df46d96a4e7cac.content.
sched.DEBUG[2025-06-28 16:04:15.033][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-06-28 16:04:15.035][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:04:15.036][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:04:15.037][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:04:15.041][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:04:15.042][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:04:15.043][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:04:15.043][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:04:15.044][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:15.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:15.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:15.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:15.048][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:15.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:15.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:15.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:15.052][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:15.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:15.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:15.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:04:15.056][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:04:15.056][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:04:15.057][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:04:15.061][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:04:15.062][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:04:15.063][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:04:15.064][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:04:15.065][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:15.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:15.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:15.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:15.068][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:15.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:15.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:15.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:15.072][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:15.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:15.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:15.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:04:15.076][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:04:15.077][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:04:15.077][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:04:15.081][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:04:15.082][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:04:15.083][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:04:15.084][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:04:15.085][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:15.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:15.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:15.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:15.088][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:15.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:15.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:15.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:15.092][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:15.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:15.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:15.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:04:15.096][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-06-28 16:04:15.097][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:04:15.098][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:04:15.099][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:04:15.103][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:04:15.104][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:04:15.105][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:04:15.105][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:04:15.106][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:04:15.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:04:15.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:15.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:15.110][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:04:15.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:04:15.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:15.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:15.114][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:04:15.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:04:15.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:15.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:15.117][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:04:15.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:04:15.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:15.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:15.121][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:15.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:15.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:15.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:15.125][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:15.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:15.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:15.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:15.128][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:04:15.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:04:15.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:15.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:15.132][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:04:15.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:04:15.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:15.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:15.136][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:04:15.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:04:15.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:15.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:15.139][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:04:15.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:04:15.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:15.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:15.143][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:04:15.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:04:15.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:15.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:15.146][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:04:15.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:04:15.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:15.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:15.150][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:15.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:15.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:15.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:15.154][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:15.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:15.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:15.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:15.157][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:15.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:15.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:15.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:15.161][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:15.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:15.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:15.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:15.165][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:15.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:15.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:15.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:15.168][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:15.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:15.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:15.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:15.172][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-06-28 16:04:15.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:04:15.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:15.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:15.181][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-06-28 16:04:15.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:04:15.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:15.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:15.184][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:04:15.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:04:15.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:15.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:15.188][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:04:15.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:04:15.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:15.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:15.191][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:04:15.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:04:15.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:15.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:15.195][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:04:15.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:04:15.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:15.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:15.199][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-06-28 16:04:15.199][private$selectFields]
biodb.TRACE[2025-06-28 16:04:15.200][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-06-28 16:04:15.201][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-06-28 16:04:15.202][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-06-28 16:04:15.203][ef$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:04:15.204][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:04:15.205][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:15.206][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:15.207][ef$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:04:15.207][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:04:15.208][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:15.209][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:15.210][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:15.211][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:15.212][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:15.213][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:15.214][ef$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:04:15.215][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:04:15.215][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:15.216][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:15.217][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:04:15.218][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:04:15.219][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:15.220][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:15.221][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:04:15.222][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:04:15.222][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:15.223][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:15.224][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:15.225][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:15.226][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:15.227][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:15.228][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:15.229][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:15.230][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:15.230][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:15.231][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:15.232][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:15.233][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:15.234][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:15.235][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-06-28 16:04:15.236][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:04:15.237][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:15.237][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:15.238][ef$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:04:15.239][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:04:15.240][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:15.241][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:15.242][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:04:15.243][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:04:15.244][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:15.245][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:15.245][ef$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:04:15.246][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:04:15.247][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:15.248][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:15.249][ef$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:04:15.250][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:04:15.251][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:15.252][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:15.253][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:15.253][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:15.254][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:15.255][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:15.256][ef$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:04:15.257][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:04:15.258][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:15.259][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:15.260][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:04:15.261][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:04:15.261][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:15.262][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:15.263][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:04:15.264][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:04:15.265][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:15.266][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:15.267][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:15.268][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:15.269][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:15.269][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:15.270][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:15.271][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:15.272][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:15.273][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:15.274][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:15.275][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:15.276][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:15.276][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:15.277][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-06-28 16:04:15.278][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:04:15.279][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:15.280][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:15.281][ef$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:04:15.282][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:04:15.283][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:15.284][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:15.284][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:04:15.285][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:04:15.286][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:15.287][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:15.288][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-06-28 16:04:15.289][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-06-28 16:04:15.290][ef$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:04:15.291][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:04:15.292][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:15.293][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:15.293][ef$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:04:15.294][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:04:15.295][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:15.296][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:15.297][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:15.298][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:15.299][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:15.300][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:15.301][ef$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:04:15.302][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:04:15.302][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:15.303][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:15.304][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:04:15.305][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:04:15.306][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:15.307][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:15.308][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:04:15.309][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:04:15.309][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:15.310][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:15.311][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:15.312][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:15.313][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:15.314][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:15.315][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:15.316][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:15.317][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:15.318][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:15.318][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:15.319][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:15.320][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:15.321][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:15.322][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-06-28 16:04:15.323][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:04:15.324][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:15.325][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:15.326][ef$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:04:15.327][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:04:15.328][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:15.328][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:15.329][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:04:15.330][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:04:15.331][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:15.332][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:15.333][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-06-28 16:04:15.334][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:04:15.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:04:15.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:15.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:15.338][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:04:15.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:04:15.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:15.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:15.341][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:04:15.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:04:15.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:15.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:15.345][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:04:15.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:04:15.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:15.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:15.349][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:04:15.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:04:15.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:15.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:15.352][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:04:15.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:04:15.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:15.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:15.356][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:15.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:15.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:15.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:15.360][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:15.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:15.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:15.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:15.363][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:15.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:15.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:15.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:15.367][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:04:15.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:04:15.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:15.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:15.371][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:04:15.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:04:15.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:15.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:15.374][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:04:15.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:04:15.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:15.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:15.378][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:04:15.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:04:15.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:15.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:15.382][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:04:15.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:04:15.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:15.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:15.385][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:04:15.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:04:15.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:15.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:15.389][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:04:15.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:04:15.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:15.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:15.393][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:04:15.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:04:15.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:15.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:15.396][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:04:15.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:04:15.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:15.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:15.400][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:15.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:15.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:15.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:15.404][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:15.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:15.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:15.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:15.408][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:15.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:15.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:15.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:15.411][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:15.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:15.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:15.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:15.415][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:15.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:15.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:15.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:15.419][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:15.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:15.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:15.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:15.427][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:15.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:15.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:15.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:15.431][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:15.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:15.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:15.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:15.434][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:15.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:15.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:15.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:15.438][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-06-28 16:04:15.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:04:15.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:15.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:15.442][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-06-28 16:04:15.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:04:15.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:15.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:15.445][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-06-28 16:04:15.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:04:15.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:15.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:15.449][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:04:15.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:04:15.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:15.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:15.453][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:04:15.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:04:15.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:15.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:15.456][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:04:15.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:04:15.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:15.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:15.460][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:04:15.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:04:15.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:15.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:15.463][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:04:15.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:04:15.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:15.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:15.467][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:04:15.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:04:15.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:15.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:15.476][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [4781, 0, 4781, C29H40N2O4, InChI=1S/C29H40N2O4/c1-6-18-17-31-10-8-20-14-27(33-3)29(35-5)16-23(20)25(31)12-21(18)11-24-22-15-28(34-4)26(32-2)13-19(22)7-9-30-24/h13-16,18,21,24-25,30H,6-12,17H2,1-5H3/t18-,21-,24+,25-/m0/s1, ...].
biodb.DEBUG[2025-06-28 16:04:15.477][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:04:15.478][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:04:15.479][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:04:15.483][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:04:15.484][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:04:15.485][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:04:15.486][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:04:15.487][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:04:15.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:04:15.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:15.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:15.490][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:04:15.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:04:15.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:15.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:15.494][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:04:15.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:04:15.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:15.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:15.497][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:04:15.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:04:15.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:15.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:15.501][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:15.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:15.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:15.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:15.504][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:15.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:15.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:15.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:15.508][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:04:15.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:04:15.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:15.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:15.512][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:04:15.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:04:15.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:15.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:15.515][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:04:15.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:04:15.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:15.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:15.519][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:04:15.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:04:15.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:15.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:15.522][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:04:15.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:04:15.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:15.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:15.526][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:04:15.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:04:15.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:15.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:15.529][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:15.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:15.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:15.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:15.533][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:15.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:15.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:15.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:15.537][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:15.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:15.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:15.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:15.540][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:15.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:15.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:15.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:15.544][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:15.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:15.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:15.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:15.547][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:15.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:15.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:15.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:15.551][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-06-28 16:04:15.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:04:15.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:15.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:15.555][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-06-28 16:04:15.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:04:15.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:15.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:15.558][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:04:15.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:04:15.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:15.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:15.562][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:04:15.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:04:15.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:15.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:15.566][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:04:15.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:04:15.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:15.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:15.569][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:04:15.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:04:15.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:15.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:15.573][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-06-28 16:04:15.574][private$selectFields]
biodb.TRACE[2025-06-28 16:04:15.575][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-06-28 16:04:15.575][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-06-28 16:04:15.576][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-06-28 16:04:15.577][ef$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:04:15.578][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:04:15.579][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:15.580][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:15.581][ef$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:04:15.582][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:04:15.583][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:15.584][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:15.584][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:15.585][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:15.586][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:15.587][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:15.588][ef$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:04:15.589][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:04:15.590][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:15.591][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:15.592][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:04:15.593][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:04:15.594][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:15.594][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:15.595][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:04:15.596][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:04:15.597][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:15.598][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:15.599][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:15.600][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:15.601][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:15.602][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:15.603][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:15.604][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:15.604][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:15.605][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:15.606][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:15.607][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:15.608][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:15.609][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:15.610][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-06-28 16:04:15.611][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:04:15.612][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:15.612][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:15.621][ef$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:04:15.623][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:04:15.624][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:15.625][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:15.626][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:04:15.627][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:04:15.628][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:15.629][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:15.630][ef$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:04:15.631][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:04:15.632][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:15.633][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:15.634][ef$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:04:15.635][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:04:15.636][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:15.637][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:15.638][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:15.640][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:15.640][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:15.641][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:15.643][ef$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:04:15.644][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:04:15.645][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:15.646][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:15.647][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:04:15.648][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:04:15.649][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:15.650][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:15.651][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:04:15.652][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:04:15.653][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:15.654][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:15.655][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:15.656][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:15.657][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:15.658][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:15.659][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:15.660][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:15.661][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:15.662][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:15.663][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:15.664][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:15.665][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:15.666][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:15.667][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-06-28 16:04:15.669][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:04:15.670][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:15.671][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:15.672][ef$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:04:15.673][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:04:15.674][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:15.675][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:15.676][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:04:15.677][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:04:15.678][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:15.696][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:15.698][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-06-28 16:04:15.699][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-06-28 16:04:15.700][ef$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:04:15.701][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:04:15.702][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:15.703][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:15.704][ef$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:04:15.705][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:04:15.706][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:15.707][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:15.708][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:15.709][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:15.710][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:15.711][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:15.712][ef$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:04:15.713][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:04:15.714][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:15.715][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:15.716][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:04:15.717][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:04:15.718][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:15.719][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:15.720][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:04:15.721][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:04:15.722][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:15.723][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:15.724][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:15.725][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:15.726][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:15.727][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:15.728][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:15.729][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:15.730][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:15.731][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:15.732][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-06-28 16:04:15.733][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:04:15.734][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:15.735][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:15.736][ef$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:04:15.737][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:04:15.738][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:15.739][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:15.740][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:04:15.741][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:04:15.741][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:15.742][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:15.743][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-06-28 16:04:15.744][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:04:15.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:04:15.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:15.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:15.748][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:04:15.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:04:15.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:15.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:15.752][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:04:15.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:04:15.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:15.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:15.757][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:04:15.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:04:15.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:15.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:15.761][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:04:15.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:04:15.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:15.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:15.765][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:04:15.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:04:15.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:15.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:15.769][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:15.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:15.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:15.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:15.773][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:15.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:15.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:15.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:15.777][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:15.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:15.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:15.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:15.781][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:04:15.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:04:15.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:15.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:15.785][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:04:15.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:04:15.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:15.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:15.789][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:04:15.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:04:15.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:15.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:15.793][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:04:15.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:04:15.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:15.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:15.797][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:04:15.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:04:15.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:15.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:15.801][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:04:15.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:04:15.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:15.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:15.805][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:04:15.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:04:15.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:15.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:15.809][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:04:15.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:04:15.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:15.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:15.812][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:04:15.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:04:15.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:15.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:15.817][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:15.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:15.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:15.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:15.821][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:15.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:15.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:15.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:15.825][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:15.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:15.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:15.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:15.829][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:15.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:15.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:15.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:15.833][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:15.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:15.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:15.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:15.837][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:15.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:15.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:15.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:15.841][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-06-28 16:04:15.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:04:15.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:15.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:15.845][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-06-28 16:04:15.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:04:15.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:15.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:15.849][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-06-28 16:04:15.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:04:15.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:15.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:15.853][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:04:15.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:04:15.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:15.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:15.857][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:04:15.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:04:15.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:15.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:15.861][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:04:15.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:04:15.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:15.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:15.865][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:04:15.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:04:15.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:15.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:15.869][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:04:15.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:04:15.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:15.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:15.873][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:04:15.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:04:15.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:15.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:15.883][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [91601, 0, 91601, C29H40N2O4, InChI=1S/C29H40N2O4/c1-6-18-17-31-10-8-20-14-27(33-3)29(35-5)16-23(20)25(31)12-21(18)11-24-22-15-28(34-4)26(32-2)13-19(22)7-9-30-24/h13-16,18,21,24-25,30H,6-12,17H2,1-5H3/t18-,21-,24?,25?/m0/s1, ...].
biodb.DEBUG[2025-06-28 16:04:15.884][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:04:15.885][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:04:15.886][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:04:15.891][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:04:15.892][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:04:15.892][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:04:15.893][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:04:15.895][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:04:15.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:04:15.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:15.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:15.898][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:04:15.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:04:15.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:15.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:15.902][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:04:15.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:04:15.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:15.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:15.906][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:04:15.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:04:15.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:15.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:15.910][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:15.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:15.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:15.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:15.913][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:15.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:15.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:15.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:15.917][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:04:15.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:04:15.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:15.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:15.921][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:04:15.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:04:15.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:15.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:15.924][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:04:15.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:04:15.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:15.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:15.928][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:04:15.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:04:15.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:15.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:15.931][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:04:15.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:04:15.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:15.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:15.935][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:04:15.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:04:15.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:15.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:15.939][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:15.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:15.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:15.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:15.942][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:15.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:15.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:15.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:15.946][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:15.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:15.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:15.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:15.950][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:15.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:15.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:15.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:15.953][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:15.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:15.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:15.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:15.961][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:15.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:15.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:15.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:15.965][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-06-28 16:04:15.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:04:15.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:15.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:15.969][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-06-28 16:04:15.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:04:15.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:15.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:15.972][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:04:15.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:04:15.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:15.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:15.976][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:04:15.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:04:15.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:15.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:15.979][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:04:15.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:04:15.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:15.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:15.983][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:04:15.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:04:15.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:15.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:15.986][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-06-28 16:04:15.987][private$selectFields]
biodb.TRACE[2025-06-28 16:04:15.988][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-06-28 16:04:15.989][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-06-28 16:04:15.990][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-06-28 16:04:15.991][ef$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:04:15.992][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:04:15.992][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:15.993][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:15.994][ef$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:04:15.995][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:04:15.996][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:15.997][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:15.998][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:15.999][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:15.999][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:16.000][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:16.001][ef$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:04:16.002][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:04:16.003][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:16.004][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:16.005][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:04:16.006][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:04:16.006][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:16.007][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:16.008][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:04:16.009][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:04:16.010][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:16.011][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:16.012][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:16.013][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:16.014][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:16.014][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:16.015][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:16.016][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:16.017][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:16.018][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:16.019][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:16.020][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:16.021][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:16.021][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:16.022][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-06-28 16:04:16.023][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:04:16.024][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:16.025][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:16.026][ef$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:04:16.027][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:04:16.028][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:16.028][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:16.029][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:04:16.030][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:04:16.031][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:16.032][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:16.033][ef$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:04:16.034][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:04:16.035][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:16.036][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:16.036][ef$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:04:16.037][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:04:16.038][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:16.039][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:16.040][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:16.041][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:16.042][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:16.043][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:16.043][ef$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:04:16.044][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:04:16.045][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:16.046][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:16.047][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:04:16.048][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:04:16.049][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:16.050][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:16.051][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:04:16.051][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:04:16.052][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:16.053][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:16.054][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:16.055][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:16.056][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:16.057][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:16.058][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:16.059][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:16.059][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:16.060][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:16.061][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:16.062][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:16.063][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:16.064][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:16.065][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-06-28 16:04:16.066][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:04:16.067][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:16.067][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:16.068][ef$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:04:16.069][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:04:16.070][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:16.071][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:16.072][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:04:16.073][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:04:16.074][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:16.074][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:16.075][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-06-28 16:04:16.076][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-06-28 16:04:16.077][ef$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:04:16.078][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:04:16.079][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:16.080][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:16.081][ef$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:04:16.082][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:04:16.083][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:16.083][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:16.084][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:16.085][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:16.086][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:16.087][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:16.088][ef$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:04:16.089][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:04:16.090][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:16.090][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:16.091][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:04:16.092][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:04:16.093][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:16.094][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:16.095][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:04:16.096][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:04:16.097][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:16.098][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:16.098][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:16.099][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:16.100][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:16.101][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:16.102][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:16.103][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:16.104][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:16.105][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:16.106][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-06-28 16:04:16.107][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:04:16.108][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:16.108][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:16.109][ef$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:04:16.110][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:04:16.111][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:16.112][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:16.113][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:04:16.114][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:04:16.115][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:16.116][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:16.116][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-06-28 16:04:16.117][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:04:16.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:04:16.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:16.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:16.121][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:04:16.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:04:16.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:16.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:16.125][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:04:16.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:04:16.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:16.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:16.128][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:04:16.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:04:16.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:16.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:16.132][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:04:16.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:04:16.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:16.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:16.136][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:04:16.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:04:16.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:16.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:16.139][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:16.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:16.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:16.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:16.143][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:16.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:16.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:16.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:16.147][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:16.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:16.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:16.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:16.150][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:04:16.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:04:16.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:16.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:16.154][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:04:16.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:04:16.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:16.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:16.158][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:04:16.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:04:16.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:16.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:16.161][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:04:16.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:04:16.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:16.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:16.165][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:04:16.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:04:16.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:16.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:16.169][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:04:16.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:04:16.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:16.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:16.172][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:04:16.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:04:16.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:16.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:16.176][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:04:16.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:04:16.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:16.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:16.180][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:04:16.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:04:16.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:16.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:16.183][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:16.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:16.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:16.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:16.187][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:16.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:16.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:16.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:16.191][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:16.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:16.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:16.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:16.194][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:16.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:16.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:16.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:16.202][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:16.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:16.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:16.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:16.206][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:16.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:16.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:16.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:16.210][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-06-28 16:04:16.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:04:16.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:16.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:16.213][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-06-28 16:04:16.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:04:16.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:16.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:16.217][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-06-28 16:04:16.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:04:16.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:16.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:16.221][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:04:16.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:04:16.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:16.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:16.224][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:04:16.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:04:16.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:16.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:16.228][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:04:16.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:04:16.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:16.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:16.231][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:04:16.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:04:16.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:16.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:16.235][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:04:16.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:04:16.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:16.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:16.239][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:04:16.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:04:16.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:16.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:16.247][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [95147, 0, 95147, C29H40N2O4, InChI=1S/C29H40N2O4/c1-3-18-16(2)14-22-20(18)10-11-21-19-6-4-8-26(33)30-13-5-7-24-28(34)27(29(35)31-24)25(32)12-9-17(19)15-23(21)22/h4,8,10-11,16-24,27H,3,5-7,9,12-15H2,1-2H3,(H,30,33)(H,31,35)/t16-,17-,18-,19+,20+,21-,22+,23+,24+,27?/m1/s1, ...].
biodb.DEBUG[2025-06-28 16:04:16.248][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-06-28 16:04:16.249][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-06-28 16:04:16.252][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:04:16.253][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:04:16.253][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:04:16.258][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:04:16.258][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:04:16.259][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:04:16.260][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-06-28 16:04:16.263][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.17*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-06-28 16:04:16.265][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-06-28 16:04:16.269][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/039d0a183be9e894c19f49abb7cadca8.content.
sched.DEBUG[2025-06-28 16:04:16.270][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-06-28 16:04:16.273][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:04:16.274][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:04:16.274][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:04:16.278][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:04:16.279][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:04:16.280][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:04:16.281][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:04:16.282][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:16.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:16.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:16.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:16.285][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:16.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:16.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:16.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:16.289][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:16.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:16.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:16.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:04:16.293][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:04:16.293][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:04:16.294][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:04:16.298][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:04:16.299][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:04:16.300][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:04:16.301][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:04:16.302][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:16.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:16.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:16.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:16.305][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:16.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:16.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:16.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:16.309][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:16.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:16.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:16.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:04:16.312][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:04:16.313][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:04:16.314][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:04:16.318][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:04:16.319][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:04:16.320][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:04:16.320][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:04:16.322][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:16.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:16.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:16.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:16.325][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:16.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:16.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:16.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:16.329][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:16.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:16.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:16.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:04:16.332][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-06-28 16:04:16.334][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:04:16.335][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:04:16.336][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:04:16.339][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:04:16.340][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:04:16.341][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:04:16.342][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:04:16.343][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:04:16.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:04:16.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:16.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:16.347][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:04:16.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:04:16.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:16.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:16.350][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:04:16.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:04:16.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:16.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:16.354][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:04:16.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:04:16.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:16.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:16.358][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:16.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:16.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:16.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:16.361][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:16.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:16.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:16.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:16.365][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:04:16.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:04:16.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:16.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:16.368][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:04:16.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:04:16.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:16.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:16.372][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:04:16.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:04:16.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:16.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:16.376][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:04:16.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:04:16.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:16.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:16.379][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:04:16.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:04:16.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:16.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:16.383][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:04:16.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:04:16.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:16.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:16.387][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:16.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:16.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:16.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:16.390][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:16.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:16.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:16.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:16.394][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:16.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:16.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:16.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:16.397][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:16.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:16.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:16.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:16.401][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:16.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:16.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:16.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:16.405][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:16.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:16.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:16.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:16.408][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-06-28 16:04:16.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:04:16.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:16.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:16.412][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-06-28 16:04:16.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:04:16.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:16.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:16.415][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:04:16.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:04:16.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:16.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:16.419][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:04:16.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:04:16.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:16.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:16.423][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:04:16.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:04:16.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:16.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:16.426][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:04:16.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:04:16.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:16.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:16.430][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-06-28 16:04:16.431][private$selectFields]
biodb.TRACE[2025-06-28 16:04:16.432][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-06-28 16:04:16.433][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-06-28 16:04:16.433][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-06-28 16:04:16.434][ef$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:04:16.435][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:04:16.436][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:16.437][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:16.438][ef$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:04:16.439][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:04:16.440][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:16.441][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:16.442][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:16.443][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:16.448][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:16.449][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:16.450][ef$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:04:16.451][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:04:16.452][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:16.453][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:16.454][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:04:16.455][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:04:16.455][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:16.456][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:16.457][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:04:16.458][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:04:16.459][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:16.460][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:16.461][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:16.462][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:16.463][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:16.463][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:16.464][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:16.465][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:16.466][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:16.467][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:16.468][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:16.469][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:16.470][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:16.470][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:16.471][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-06-28 16:04:16.472][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:04:16.473][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:16.474][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:16.475][ef$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:04:16.476][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:04:16.477][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:16.477][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:16.478][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:04:16.479][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:04:16.480][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:16.481][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:16.482][ef$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:04:16.483][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:04:16.484][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:16.485][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:16.485][ef$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:04:16.486][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:04:16.487][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:16.488][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:16.489][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:16.490][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:16.491][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:16.492][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:16.492][ef$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:04:16.493][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:04:16.494][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:16.495][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:16.496][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:04:16.497][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:04:16.498][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:16.499][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:16.500][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:04:16.500][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:04:16.501][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:16.502][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:16.503][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:16.504][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:16.505][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:16.506][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:16.507][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:16.508][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:16.508][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:16.509][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:16.510][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:16.511][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:16.512][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:16.513][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:16.514][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-06-28 16:04:16.515][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:04:16.516][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:16.516][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:16.517][ef$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:04:16.518][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:04:16.519][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:16.520][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:16.521][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:04:16.522][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:04:16.523][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:16.523][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:16.524][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-06-28 16:04:16.525][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-06-28 16:04:16.526][ef$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:04:16.527][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:04:16.528][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:16.529][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:16.530][ef$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:04:16.531][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:04:16.532][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:16.532][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:16.533][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:16.534][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:16.535][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:16.536][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:16.537][ef$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:04:16.538][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:04:16.539][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:16.539][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:16.540][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:04:16.541][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:04:16.542][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:16.543][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:16.544][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:04:16.545][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:04:16.546][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:16.546][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:16.547][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:16.548][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:16.549][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:16.550][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:16.551][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:16.552][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:16.553][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:16.554][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:16.554][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:16.555][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:16.556][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:16.557][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:16.558][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-06-28 16:04:16.559][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:04:16.560][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:16.561][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:16.562][ef$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:04:16.562][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:04:16.563][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:16.564][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:16.565][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:04:16.566][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:04:16.567][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:16.568][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:16.569][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-06-28 16:04:16.570][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:04:16.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:04:16.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:16.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:16.573][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:04:16.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:04:16.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:16.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:16.577][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:04:16.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:04:16.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:16.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:16.581][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:04:16.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:04:16.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:16.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:16.584][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:04:16.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:04:16.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:16.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:16.588][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:04:16.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:04:16.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:16.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:16.592][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:16.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:16.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:16.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:16.595][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:16.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:16.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:16.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:16.599][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:16.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:16.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:16.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:16.603][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:04:16.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:04:16.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:16.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:16.606][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:04:16.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:04:16.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:16.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:16.610][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:04:16.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:04:16.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:16.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:16.614][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:04:16.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:04:16.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:16.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:16.617][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:04:16.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:04:16.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:16.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:16.621][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:04:16.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:04:16.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:16.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:16.625][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:04:16.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:04:16.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:16.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:16.629][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:04:16.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:04:16.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:16.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:16.632][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:04:16.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:04:16.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:16.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:16.636][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:16.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:16.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:16.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:16.640][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:16.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:16.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:16.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:16.643][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:16.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:16.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:16.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:16.647][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:16.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:16.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:16.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:16.651][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:16.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:16.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:16.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:16.654][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:16.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:16.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:16.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:16.658][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:16.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:16.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:16.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:16.662][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:16.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:16.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:16.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:16.665][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:16.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:16.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:16.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:16.669][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-06-28 16:04:16.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:04:16.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:16.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:16.673][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-06-28 16:04:16.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:04:16.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:16.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:16.676][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-06-28 16:04:16.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:04:16.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:16.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:16.680][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:04:16.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:04:16.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:16.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:16.684][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:04:16.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:04:16.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:16.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:16.692][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:04:16.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:04:16.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:16.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:16.696][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:04:16.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:04:16.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:16.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:16.700][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:04:16.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:04:16.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:16.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:16.703][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:04:16.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:04:16.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:16.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:16.712][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [636, 0, 636, C24H26O6, InChI=1S/C24H26O6/c1-12(2)6-7-14-19-17(11-16(26)22(14)28-5)29-18-10-15(25)13-8-9-24(3,4)30-23(13)20(18)21(19)27/h6,10-11,25-26H,7-9H2,1-5H3, ...].
biodb.DEBUG[2025-06-28 16:04:16.713][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:04:16.714][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:04:16.715][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:04:16.719][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:04:16.720][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:04:16.721][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:04:16.722][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:04:16.723][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:04:16.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:04:16.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:16.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:16.726][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:04:16.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:04:16.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:16.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:16.730][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:04:16.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:04:16.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:16.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:16.733][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:04:16.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:04:16.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:16.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:16.737][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:16.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:16.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:16.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:16.741][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:16.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:16.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:16.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:16.744][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:04:16.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:04:16.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:16.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:16.748][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:04:16.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:04:16.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:16.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:16.751][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:04:16.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:04:16.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:16.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:16.755][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:04:16.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:04:16.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:16.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:16.758][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:04:16.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:04:16.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:16.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:16.762][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:04:16.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:04:16.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:16.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:16.766][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:16.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:16.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:16.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:16.769][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:16.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:16.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:16.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:16.773][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:16.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:16.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:16.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:16.776][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:16.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:16.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:16.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:16.780][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:16.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:16.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:16.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:16.784][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:16.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:16.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:16.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:16.787][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-06-28 16:04:16.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:04:16.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:16.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:16.791][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-06-28 16:04:16.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:04:16.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:16.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:16.794][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:04:16.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:04:16.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:16.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:16.798][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:04:16.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:04:16.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:16.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:16.801][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:04:16.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:04:16.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:16.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:16.805][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:04:16.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:04:16.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:16.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:16.809][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-06-28 16:04:16.809][private$selectFields]
biodb.TRACE[2025-06-28 16:04:16.810][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-06-28 16:04:16.811][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-06-28 16:04:16.812][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-06-28 16:04:16.813][ef$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:04:16.814][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:04:16.815][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:16.816][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:16.817][ef$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:04:16.817][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:04:16.818][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:16.819][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:16.820][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:16.821][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:16.822][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:16.823][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:16.824][ef$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:04:16.825][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:04:16.825][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:16.826][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:16.827][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:04:16.828][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:04:16.829][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:16.830][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:16.831][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:04:16.832][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:04:16.833][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:16.833][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:16.834][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:16.835][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:16.836][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:16.837][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:16.838][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:16.839][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:16.840][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:16.841][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:16.842][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:16.842][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:16.843][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:16.844][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:16.845][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-06-28 16:04:16.846][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:04:16.847][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:16.848][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:16.849][ef$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:04:16.850][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:04:16.851][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:16.851][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:16.852][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:04:16.853][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:04:16.854][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:16.855][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:16.856][ef$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:04:16.857][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:04:16.858][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:16.859][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:16.859][ef$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:04:16.860][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:04:16.861][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:16.862][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:16.863][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:16.864][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:16.865][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:16.866][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:16.867][ef$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:04:16.868][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:04:16.868][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:16.869][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:16.870][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:04:16.871][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:04:16.872][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:16.873][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:16.874][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:04:16.875][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:04:16.876][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:16.876][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:16.877][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:16.878][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:16.879][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:16.880][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:16.881][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:16.882][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:16.883][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:16.884][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:16.884][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:16.885][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:16.886][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:16.887][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:16.888][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-06-28 16:04:16.889][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:04:16.890][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:16.891][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:16.892][ef$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:04:16.893][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:04:16.893][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:16.894][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:16.895][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:04:16.896][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:04:16.897][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:16.898][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:16.899][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-06-28 16:04:16.900][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-06-28 16:04:16.901][ef$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:04:16.902][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:04:16.902][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:16.903][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:16.904][ef$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:04:16.905][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:04:16.906][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:16.907][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:16.908][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:16.909][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:16.909][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:16.910][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:16.911][ef$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:04:16.912][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:04:16.913][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:16.914][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:16.915][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:04:16.916][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:04:16.917][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:16.917][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:16.918][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:04:16.919][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:04:16.920][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:16.921][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:16.922][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:16.923][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:16.924][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:16.925][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:16.925][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:16.926][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:16.931][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:16.933][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:16.933][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-06-28 16:04:16.934][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:04:16.935][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:16.936][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:16.937][ef$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:04:16.938][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:04:16.939][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:16.940][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:16.941][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:04:16.942][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:04:16.942][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:16.943][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:16.944][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-06-28 16:04:16.945][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:04:16.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:04:16.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:16.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:16.949][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:04:16.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:04:16.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:16.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:16.952][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:04:16.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:04:16.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:16.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:16.956][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:04:16.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:04:16.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:16.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:16.960][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:04:16.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:04:16.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:16.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:16.963][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:04:16.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:04:16.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:16.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:16.967][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:16.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:16.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:16.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:16.970][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:16.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:16.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:16.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:16.974][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:16.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:16.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:16.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:16.978][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:04:16.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:04:16.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:16.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:16.981][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:04:16.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:04:16.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:16.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:16.985][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:04:16.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:04:16.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:16.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:16.988][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:04:16.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:04:16.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:16.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:16.992][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:04:16.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:04:16.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:16.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:16.996][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:04:16.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:04:16.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:16.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:16.999][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:04:17.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:04:17.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:17.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:17.003][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:04:17.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:04:17.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:17.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:17.006][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:04:17.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:04:17.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:17.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:17.010][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:17.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:17.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:17.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:17.014][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:17.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:17.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:17.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:17.017][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:17.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:17.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:17.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:17.021][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:17.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:17.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:17.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:17.024][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:17.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:17.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:17.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:17.028][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:17.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:17.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:17.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:17.032][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-06-28 16:04:17.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:04:17.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:17.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:17.035][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-06-28 16:04:17.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:04:17.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:17.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:17.039][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-06-28 16:04:17.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:04:17.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:17.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:17.042][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:04:17.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:04:17.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:17.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:17.046][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:04:17.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:04:17.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:17.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:17.050][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:04:17.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:04:17.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:17.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:17.053][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:04:17.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:04:17.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:17.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:17.057][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:04:17.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:04:17.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:17.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:17.061][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:04:17.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:04:17.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:17.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:17.069][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [64199, 0, 64199, C24H27ClN2O2, InChI=1S/C24H26N2O2.ClH/c27-24(28)20-9-10-23-22(16-20)21(17-25-23)8-4-5-13-26-14-11-19(12-15-26)18-6-2-1-3-7-18;/h1-3,6-7,9-11,16-17,25H,4-5,8,12-15H2,(H,27,28);1H, ...].
biodb.DEBUG[2025-06-28 16:04:17.070][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:04:17.071][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:04:17.072][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:04:17.076][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:04:17.077][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:04:17.078][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:04:17.079][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:04:17.080][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:04:17.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:04:17.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:17.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:17.083][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:04:17.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:04:17.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:17.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:17.087][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:04:17.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:04:17.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:17.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:17.090][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:04:17.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:04:17.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:17.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:17.094][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:17.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:17.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:17.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:17.098][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:17.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:17.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:17.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:17.101][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:04:17.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:04:17.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:17.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:17.105][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:04:17.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:04:17.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:17.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:17.108][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:04:17.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:04:17.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:17.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:17.112][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:04:17.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:04:17.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:17.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:17.116][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:04:17.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:04:17.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:17.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:17.119][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:04:17.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:04:17.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:17.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:17.123][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:17.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:17.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:17.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:17.126][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:17.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:17.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:17.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:17.130][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:17.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:17.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:17.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:17.134][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:17.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:17.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:17.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:17.137][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:17.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:17.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:17.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:17.141][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:17.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:17.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:17.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:17.145][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-06-28 16:04:17.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:04:17.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:17.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:17.148][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-06-28 16:04:17.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:04:17.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:17.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:17.152][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:04:17.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:04:17.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:17.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:17.155][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:04:17.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:04:17.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:17.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:17.159][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:04:17.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:04:17.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:17.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:17.162][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:04:17.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:04:17.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:17.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:17.166][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-06-28 16:04:17.167][private$selectFields]
biodb.TRACE[2025-06-28 16:04:17.168][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-06-28 16:04:17.173][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-06-28 16:04:17.174][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-06-28 16:04:17.175][ef$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:04:17.176][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:04:17.177][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:17.178][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:17.179][ef$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:04:17.180][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:04:17.180][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:17.181][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:17.182][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:17.183][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:17.184][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:17.185][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:17.186][ef$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:04:17.187][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:04:17.187][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:17.188][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:17.189][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:04:17.190][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:04:17.191][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:17.192][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:17.193][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:04:17.194][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:04:17.194][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:17.195][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:17.196][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:17.197][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:17.198][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:17.199][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:17.200][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:17.201][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:17.202][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:17.202][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:17.203][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:17.204][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:17.205][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:17.206][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:17.207][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-06-28 16:04:17.208][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:04:17.209][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:17.209][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:17.210][ef$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:04:17.211][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:04:17.212][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:17.213][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:17.214][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:04:17.215][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:04:17.216][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:17.216][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:17.217][ef$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:04:17.218][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:04:17.219][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:17.220][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:17.221][ef$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:04:17.222][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:04:17.223][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:17.223][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:17.224][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:17.225][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:17.226][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:17.227][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:17.228][ef$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:04:17.229][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:04:17.230][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:17.230][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:17.231][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:04:17.232][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:04:17.233][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:17.234][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:17.235][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:04:17.236][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:04:17.237][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:17.238][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:17.238][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:17.239][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:17.240][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:17.241][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:17.242][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:17.243][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:17.244][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:17.245][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:17.245][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:17.246][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:17.247][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:17.248][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:17.249][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-06-28 16:04:17.250][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:04:17.251][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:17.252][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:17.252][ef$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:04:17.253][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:04:17.254][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:17.255][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:17.256][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:04:17.257][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:04:17.258][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:17.259][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:17.260][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-06-28 16:04:17.261][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-06-28 16:04:17.261][ef$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:04:17.262][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:04:17.263][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:17.264][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:17.265][ef$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:04:17.266][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:04:17.267][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:17.268][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:17.268][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:17.269][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:17.270][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:17.271][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:17.272][ef$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:04:17.273][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:04:17.274][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:17.275][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:17.276][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:04:17.277][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:04:17.277][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:17.278][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:17.279][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:04:17.280][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:04:17.281][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:17.282][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:17.283][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:17.284][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:17.285][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:17.285][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:17.286][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:17.287][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:17.288][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:17.289][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:17.290][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-06-28 16:04:17.291][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:04:17.292][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:17.292][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:17.293][ef$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:04:17.294][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:04:17.295][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:17.296][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:17.297][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:04:17.298][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:04:17.299][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:17.300][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:17.300][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-06-28 16:04:17.301][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:04:17.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:04:17.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:17.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:17.305][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:04:17.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:04:17.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:17.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:17.309][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:04:17.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:04:17.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:17.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:17.312][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:04:17.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:04:17.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:17.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:17.316][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:04:17.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:04:17.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:17.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:17.320][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:04:17.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:04:17.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:17.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:17.324][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:17.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:17.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:17.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:17.327][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:17.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:17.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:17.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:17.331][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:17.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:17.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:17.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:17.335][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:04:17.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:04:17.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:17.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:17.338][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:04:17.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:04:17.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:17.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:17.342][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:04:17.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:04:17.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:17.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:17.346][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:04:17.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:04:17.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:17.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:17.349][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:04:17.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:04:17.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:17.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:17.353][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:04:17.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:04:17.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:17.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:17.357][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:04:17.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:04:17.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:17.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:17.360][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:04:17.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:04:17.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:17.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:17.364][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:04:17.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:04:17.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:17.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:17.368][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:17.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:17.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:17.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:17.371][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:17.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:17.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:17.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:17.375][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:17.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:17.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:17.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:17.379][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:17.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:17.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:17.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:17.382][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:17.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:17.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:17.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:17.386][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:17.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:17.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:17.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:17.390][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-06-28 16:04:17.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:04:17.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:17.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:17.393][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-06-28 16:04:17.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:04:17.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:17.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:17.397][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-06-28 16:04:17.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:04:17.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:17.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:17.401][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:04:17.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:04:17.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:17.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:17.404][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:04:17.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:04:17.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:17.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:17.408][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:04:17.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:04:17.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:17.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:17.416][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:04:17.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:04:17.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:17.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:17.420][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:04:17.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:04:17.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:17.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:17.423][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:04:17.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:04:17.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:17.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:17.432][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [65648, 0, 65648, C24H26O6, InChI=1S/C24H26O6/c1-13(2)9-10-23-20(27)22(28-5)11-14-19(26)18-15(25)7-6-8-16(18)29-24(14,23)17(12-22)21(3,4)30-23/h6-9,11,17,25H,10,12H2,1-5H3/t17-,22-,23-,24+/m0/s1, ...].
biodb.DEBUG[2025-06-28 16:04:17.433][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-06-28 16:04:17.434][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-06-28 16:04:17.441][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:04:17.442][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:04:17.443][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:04:17.447][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:04:17.448][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:04:17.449][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:04:17.449][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-06-28 16:04:17.452][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-06-28 16:04:17.454][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-06-28 16:04:17.456][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/2e865a03592d6effdf242ff63104f35a.content.
sched.DEBUG[2025-06-28 16:04:17.457][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
sched.DEBUG[2025-06-28 16:04:17.459][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-06-28 16:04:17.461][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-06-28 16:04:17.464][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/f0c73645ca32490f91d503a462d812b2.content.
sched.DEBUG[2025-06-28 16:04:17.464][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-06-28 16:04:17.467][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:04:17.468][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:04:17.468][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:04:17.472][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:04:17.473][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:04:17.474][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:04:17.475][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:04:17.476][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:17.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:17.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:17.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:17.479][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:17.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:17.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:17.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:17.483][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:17.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:17.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:17.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:04:17.487][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:04:17.487][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:04:17.488][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:04:17.492][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:04:17.493][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:04:17.494][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:04:17.495][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:04:17.496][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:17.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:17.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:17.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:17.499][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:17.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:17.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:17.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:17.503][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:17.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:17.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:17.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:04:17.506][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:04:17.507][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:04:17.508][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:04:17.512][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:04:17.513][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:04:17.514][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:04:17.514][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:04:17.515][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:17.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:17.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:17.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:17.519][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:17.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:17.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:17.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:17.523][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:17.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:17.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:17.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:04:17.527][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-06-28 16:04:17.528][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:04:17.529][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:04:17.530][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:04:17.534][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:04:17.534][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:04:17.535][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:04:17.536][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:04:17.537][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:04:17.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:04:17.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:17.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:17.541][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:04:17.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:04:17.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:17.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:17.544][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:04:17.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:04:17.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:17.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:17.548][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:04:17.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:04:17.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:17.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:17.551][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:17.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:17.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:17.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:17.555][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:17.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:17.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:17.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:17.559][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:04:17.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:04:17.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:17.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:17.562][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:04:17.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:04:17.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:17.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:17.566][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:04:17.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:04:17.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:17.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:17.570][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:04:17.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:04:17.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:17.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:17.573][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:04:17.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:04:17.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:17.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:17.577][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:04:17.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:04:17.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:17.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:17.580][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:17.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:17.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:17.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:17.584][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:17.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:17.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:17.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:17.588][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:17.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:17.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:17.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:17.591][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:17.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:17.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:17.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:17.595][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:17.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:17.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:17.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:17.598][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:17.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:17.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:17.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:17.602][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-06-28 16:04:17.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:04:17.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:17.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:17.606][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-06-28 16:04:17.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:04:17.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:17.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:17.609][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:04:17.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:04:17.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:17.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:17.613][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:04:17.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:04:17.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:17.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:17.616][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:04:17.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:04:17.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:17.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:17.620][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:04:17.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:04:17.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:17.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:17.624][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-06-28 16:04:17.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-06-28 16:04:17.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:17.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:17.627][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-06-28 16:04:17.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-06-28 16:04:17.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:17.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:17.631][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-06-28 16:04:17.632][private$selectFields]
biodb.TRACE[2025-06-28 16:04:17.633][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-06-28 16:04:17.633][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-06-28 16:04:17.634][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-06-28 16:04:17.635][ef$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:04:17.636][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:04:17.637][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:17.638][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:17.639][ef$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:04:17.640][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:04:17.641][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:17.642][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:17.642][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:17.643][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:17.644][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:17.645][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:17.646][ef$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:04:17.647][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:04:17.648][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:17.649][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:17.650][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:04:17.651][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:04:17.651][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:17.652][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:17.653][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:04:17.659][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:04:17.660][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:17.661][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:17.662][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:17.663][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:17.663][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:17.664][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:17.665][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:17.666][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:17.667][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:17.668][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:17.669][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:17.670][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:17.671][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:17.671][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:17.672][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-06-28 16:04:17.673][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:04:17.674][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:17.675][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:17.676][ef$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:04:17.677][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:04:17.678][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:17.678][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:17.679][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:04:17.680][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:04:17.681][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:17.682][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:17.683][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-06-28 16:04:17.684][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-06-28 16:04:17.685][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:17.685][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:17.686][ef$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:04:17.687][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:04:17.688][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:17.689][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:17.690][ef$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:04:17.691][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:04:17.692][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:17.692][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:17.693][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:17.694][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:17.695][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:17.696][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:17.697][ef$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:04:17.698][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:04:17.699][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:17.699][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:17.700][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:04:17.701][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:04:17.702][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:17.703][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:17.704][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:04:17.705][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:04:17.706][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:17.706][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:17.707][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:17.708][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:17.709][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:17.710][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:17.711][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:17.712][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:17.713][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:17.714][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:17.714][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:17.715][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:17.716][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:17.717][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:17.718][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-06-28 16:04:17.719][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:04:17.720][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:17.721][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:17.721][ef$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:04:17.722][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:04:17.723][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:17.724][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:17.725][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:04:17.726][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:04:17.727][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:17.728][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:17.728][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-06-28 16:04:17.729][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-06-28 16:04:17.730][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:17.731][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:17.732][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-06-28 16:04:17.733][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-06-28 16:04:17.734][ef$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:04:17.735][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:04:17.736][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:17.736][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:17.737][ef$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:04:17.738][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:04:17.739][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:17.740][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:17.741][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:17.742][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:17.743][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:17.743][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:17.744][ef$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:04:17.745][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:04:17.746][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:17.747][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:17.748][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:04:17.749][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:04:17.750][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:17.751][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:17.751][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:04:17.752][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:04:17.753][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:17.754][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:17.755][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:17.756][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:17.757][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:17.758][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:17.758][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:17.759][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:17.760][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:17.761][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:17.762][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:17.763][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:17.764][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:17.765][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:17.765][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-06-28 16:04:17.766][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:04:17.767][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:17.768][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:17.769][ef$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:04:17.770][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:04:17.771][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:17.772][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:17.773][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:04:17.773][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:04:17.774][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:17.775][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:17.776][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-06-28 16:04:17.777][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:04:17.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:04:17.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:17.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:17.781][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:04:17.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:04:17.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:17.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:17.784][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:04:17.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:04:17.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:17.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:17.788][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:04:17.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:04:17.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:17.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:17.791][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:04:17.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:04:17.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:17.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:17.795][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:04:17.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:04:17.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:17.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:17.799][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:17.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:17.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:17.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:17.803][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:17.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:17.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:17.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:17.806][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:17.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:17.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:17.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:17.810][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:04:17.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:04:17.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:17.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:17.814][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:04:17.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:04:17.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:17.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:17.817][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:04:17.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:04:17.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:17.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:17.821][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:04:17.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:04:17.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:17.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:17.825][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:04:17.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:04:17.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:17.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:17.828][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:04:17.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:04:17.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:17.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:17.832][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:04:17.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:04:17.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:17.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:17.836][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:04:17.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:04:17.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:17.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:17.839][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:04:17.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:04:17.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:17.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:17.843][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:17.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:17.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:17.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:17.846][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:17.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:17.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:17.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:17.850][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:17.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:17.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:17.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:17.854][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:17.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:17.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:17.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:17.858][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:17.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:17.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:17.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:17.861][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:17.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:17.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:17.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:17.865][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:17.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:17.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:17.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:17.869][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:17.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:17.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:17.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:17.872][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:17.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:17.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:17.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:17.876][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-06-28 16:04:17.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:04:17.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:17.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:17.880][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-06-28 16:04:17.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:04:17.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:17.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:17.883][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-06-28 16:04:17.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:04:17.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:17.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:17.887][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:04:17.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:04:17.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:17.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:17.891][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:04:17.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:04:17.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:17.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:17.894][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:04:17.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:04:17.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:17.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:17.903][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:04:17.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:04:17.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:17.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:17.906][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:04:17.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:04:17.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:17.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:17.910][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:04:17.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:04:17.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:17.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:17.919][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [4648, 0, 4648, C30H50, InChI=1S/C30H50/c1-20(2)21-12-17-27(5)22(21)13-18-29(7)24(27)10-11-25-28(6)16-9-15-26(3,4)23(28)14-19-30(25,29)8/h21-25H,1,9-19H2,2-8H3/t21-,22+,23+,24-,25-,27+,28+,29-,30-/m1/s1, ...].
biodb.DEBUG[2025-06-28 16:04:17.920][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:04:17.921][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:04:17.922][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:04:17.926][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:04:17.926][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:04:17.927][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:04:17.928][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:04:17.929][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:04:17.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:04:17.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:17.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:17.933][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:04:17.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:04:17.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:17.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:17.936][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:04:17.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:04:17.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:17.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:17.940][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:04:17.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:04:17.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:17.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:17.943][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:17.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:17.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:17.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:17.947][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:17.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:17.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:17.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:17.950][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:04:17.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:04:17.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:17.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:17.954][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:04:17.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:04:17.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:17.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:17.958][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:04:17.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:04:17.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:17.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:17.961][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:04:17.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:04:17.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:17.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:17.965][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:04:17.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:04:17.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:17.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:17.968][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:04:17.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:04:17.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:17.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:17.972][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:17.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:17.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:17.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:17.975][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:17.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:17.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:17.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:17.979][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:17.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:17.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:17.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:17.983][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:17.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:17.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:17.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:17.986][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:17.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:17.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:17.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:17.990][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:17.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:17.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:17.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:17.993][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-06-28 16:04:17.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:04:17.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:17.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:17.997][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-06-28 16:04:17.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:04:17.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:17.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:18.000][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:04:18.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:04:18.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:18.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:18.004][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:04:18.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:04:18.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:18.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:18.007][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:04:18.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:04:18.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:18.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:18.011][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:04:18.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:04:18.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:18.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:18.015][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-06-28 16:04:18.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-06-28 16:04:18.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:18.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:18.018][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-06-28 16:04:18.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-06-28 16:04:18.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:18.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:18.022][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-06-28 16:04:18.023][private$selectFields]
biodb.TRACE[2025-06-28 16:04:18.024][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-06-28 16:04:18.024][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-06-28 16:04:18.025][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-06-28 16:04:18.026][ef$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:04:18.027][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:04:18.028][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:18.029][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:18.030][ef$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:04:18.031][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:04:18.031][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:18.032][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:18.033][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:18.034][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:18.035][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:18.036][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:18.037][ef$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:04:18.038][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:04:18.039][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:18.039][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:18.040][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:04:18.041][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:04:18.042][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:18.043][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:18.044][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:04:18.045][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:04:18.046][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:18.047][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:18.048][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:18.049][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:18.049][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:18.050][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:18.051][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:18.052][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:18.053][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:18.054][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:18.055][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:18.056][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:18.057][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:18.057][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:18.058][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-06-28 16:04:18.059][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:04:18.060][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:18.061][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:18.062][ef$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:04:18.063][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:04:18.064][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:18.065][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:18.065][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:04:18.066][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:04:18.067][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:18.068][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:18.069][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-06-28 16:04:18.070][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-06-28 16:04:18.071][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:18.072][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:18.073][ef$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:04:18.074][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:04:18.074][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:18.075][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:18.076][ef$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:04:18.077][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:04:18.078][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:18.079][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:18.080][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:18.081][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:18.082][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:18.082][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:18.083][ef$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:04:18.084][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:04:18.085][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:18.086][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:18.087][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:04:18.088][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:04:18.089][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:18.090][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:18.090][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:04:18.091][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:04:18.092][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:18.093][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:18.094][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:18.095][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:18.096][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:18.097][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:18.098][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:18.099][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:18.099][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:18.100][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:18.101][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:18.102][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:18.103][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:18.104][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:18.105][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-06-28 16:04:18.106][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:04:18.107][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:18.107][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:18.108][ef$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:04:18.109][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:04:18.110][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:18.111][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:18.112][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:04:18.113][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:04:18.114][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:18.115][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:18.115][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-06-28 16:04:18.116][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-06-28 16:04:18.117][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:18.118][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:18.119][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-06-28 16:04:18.120][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-06-28 16:04:18.121][ef$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:04:18.122][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:04:18.123][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:18.124][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:18.124][ef$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:04:18.125][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:04:18.126][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:18.127][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:18.128][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:18.129][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:18.130][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:18.131][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:18.132][ef$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:04:18.133][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:04:18.133][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:18.139][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:18.140][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:04:18.141][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:04:18.142][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:18.142][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:18.143][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:04:18.144][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:04:18.145][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:18.146][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:18.147][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:18.148][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:18.149][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:18.149][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:18.150][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:18.151][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:18.152][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:18.153][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:18.154][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:18.155][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:18.156][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:18.156][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:18.157][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-06-28 16:04:18.158][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:04:18.159][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:18.160][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:18.161][ef$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:04:18.162][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:04:18.163][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:18.163][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:18.164][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:04:18.165][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:04:18.166][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:18.167][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:18.168][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-06-28 16:04:18.169][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:04:18.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:04:18.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:18.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:18.172][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:04:18.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:04:18.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:18.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:18.176][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:04:18.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:04:18.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:18.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:18.180][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:04:18.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:04:18.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:18.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:18.183][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:04:18.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:04:18.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:18.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:18.187][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:04:18.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:04:18.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:18.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:18.190][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:18.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:18.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:18.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:18.194][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:18.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:18.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:18.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:18.197][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:18.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:18.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:18.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:18.201][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:04:18.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:04:18.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:18.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:18.205][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:04:18.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:04:18.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:18.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:18.208][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:04:18.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:04:18.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:18.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:18.212][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:04:18.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:04:18.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:18.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:18.216][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:04:18.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:04:18.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:18.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:18.219][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:04:18.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:04:18.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:18.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:18.223][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:04:18.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:04:18.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:18.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:18.226][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:04:18.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:04:18.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:18.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:18.230][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:04:18.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:04:18.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:18.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:18.234][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:18.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:18.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:18.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:18.237][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:18.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:18.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:18.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:18.241][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:18.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:18.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:18.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:18.245][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:18.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:18.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:18.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:18.248][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:18.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:18.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:18.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:18.252][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:18.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:18.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:18.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:18.256][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:18.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:18.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:18.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:18.259][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:18.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:18.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:18.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:18.263][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:18.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:18.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:18.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:18.266][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-06-28 16:04:18.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:04:18.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:18.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:18.270][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-06-28 16:04:18.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:04:18.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:18.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:18.274][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-06-28 16:04:18.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:04:18.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:18.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:18.277][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:04:18.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:04:18.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:18.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:18.281][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:04:18.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:04:18.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:18.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:18.285][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:04:18.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:04:18.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:18.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:18.288][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:04:18.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:04:18.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:18.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:18.292][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:04:18.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:04:18.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:18.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:18.296][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:04:18.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:04:18.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:18.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:18.305][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [15440, 0, 15440, C30H50, InChI=1S/C30H50/c1-25(2)15-11-19-29(7)23-13-21-27(5)17-9-10-18-28(6)22-14-24-30(8)20-12-16-26(3)4/h15-18,23-24H,9-14,19-22H2,1-8H3/b27-17+,28-18+,29-23+,30-24+, ...].
biodb.DEBUG[2025-06-28 16:04:18.306][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:04:18.307][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:04:18.307][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:04:18.312][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:04:18.312][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:04:18.313][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:04:18.314][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:04:18.315][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:04:18.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:04:18.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:18.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:18.319][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:04:18.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:04:18.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:18.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:18.322][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:04:18.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:04:18.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:18.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:18.326][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:04:18.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:04:18.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:18.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:18.330][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:18.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:18.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:18.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:18.333][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:18.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:18.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:18.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:18.337][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:04:18.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:04:18.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:18.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:18.340][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:04:18.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:04:18.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:18.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:18.344][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:04:18.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:04:18.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:18.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:18.348][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:04:18.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:04:18.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:18.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:18.351][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:04:18.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:04:18.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:18.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:18.355][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:04:18.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:04:18.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:18.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:18.359][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:18.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:18.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:18.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:18.362][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:18.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:18.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:18.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:18.366][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:18.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:18.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:18.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:18.369][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:18.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:18.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:18.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:18.373][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:18.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:18.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:18.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:18.381][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:18.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:18.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:18.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:18.385][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-06-28 16:04:18.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:04:18.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:18.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:18.388][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-06-28 16:04:18.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:04:18.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:18.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:18.392][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:04:18.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:04:18.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:18.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:18.396][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:04:18.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:04:18.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:18.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:18.399][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:04:18.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:04:18.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:18.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:18.403][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:04:18.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:04:18.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:18.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:18.406][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-06-28 16:04:18.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-06-28 16:04:18.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:18.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:18.410][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-06-28 16:04:18.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-06-28 16:04:18.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:18.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:18.413][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-06-28 16:04:18.414][private$selectFields]
biodb.TRACE[2025-06-28 16:04:18.415][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-06-28 16:04:18.416][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-06-28 16:04:18.417][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-06-28 16:04:18.418][ef$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:04:18.418][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:04:18.419][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:18.420][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:18.421][ef$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:04:18.422][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:04:18.423][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:18.424][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:18.425][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:18.426][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:18.426][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:18.427][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:18.428][ef$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:04:18.429][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:04:18.430][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:18.431][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:18.432][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:04:18.433][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:04:18.433][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:18.434][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:18.435][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:04:18.436][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:04:18.437][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:18.438][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:18.439][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:18.440][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:18.441][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:18.441][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:18.442][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:18.443][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:18.444][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:18.445][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:18.446][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:18.447][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:18.448][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:18.448][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:18.449][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-06-28 16:04:18.450][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:04:18.451][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:18.452][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:18.453][ef$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:04:18.454][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:04:18.455][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:18.455][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:18.456][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:04:18.457][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:04:18.458][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:18.459][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:18.460][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-06-28 16:04:18.461][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-06-28 16:04:18.462][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:18.462][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:18.463][ef$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:04:18.464][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:04:18.465][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:18.466][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:18.467][ef$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:04:18.468][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:04:18.469][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:18.470][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:18.470][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:18.471][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:18.472][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:18.473][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:18.474][ef$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:04:18.475][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:04:18.476][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:18.477][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:18.477][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:04:18.478][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:04:18.479][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:18.480][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:18.481][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:04:18.482][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:04:18.483][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:18.484][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:18.485][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:18.485][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:18.486][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:18.487][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:18.488][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:18.489][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:18.490][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:18.491][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:18.492][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:18.493][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:18.493][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:18.494][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:18.495][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-06-28 16:04:18.496][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:04:18.497][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:18.498][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:18.499][ef$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:04:18.500][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:04:18.500][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:18.501][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:18.502][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:04:18.503][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:04:18.504][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:18.505][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:18.506][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-06-28 16:04:18.507][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-06-28 16:04:18.508][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:18.508][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:18.509][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-06-28 16:04:18.510][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-06-28 16:04:18.511][ef$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:04:18.512][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:04:18.513][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:18.514][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:18.515][ef$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:04:18.516][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:04:18.517][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:18.517][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:18.518][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:18.519][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:18.520][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:18.521][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:18.522][ef$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:04:18.523][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:04:18.524][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:18.525][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:18.526][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:04:18.527][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:04:18.527][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:18.528][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:18.529][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:04:18.530][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:04:18.531][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:18.532][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:18.533][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:18.534][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:18.535][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:18.535][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:18.536][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:18.537][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:18.538][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:18.539][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:18.540][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-06-28 16:04:18.541][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:04:18.542][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:18.543][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:18.543][ef$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:04:18.544][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:04:18.545][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:18.546][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:18.547][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:04:18.548][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:04:18.549][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:18.550][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:18.551][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-06-28 16:04:18.552][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:04:18.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:04:18.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:18.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:18.555][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:04:18.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:04:18.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:18.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:18.559][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:04:18.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:04:18.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:18.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:18.563][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:04:18.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:04:18.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:18.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:18.566][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:04:18.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:04:18.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:18.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:18.570][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:04:18.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:04:18.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:18.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:18.574][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:18.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:18.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:18.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:18.577][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:18.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:18.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:18.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:18.581][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:18.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:18.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:18.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:18.585][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:04:18.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:04:18.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:18.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:18.588][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:04:18.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:04:18.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:18.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:18.592][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:04:18.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:04:18.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:18.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:18.596][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:04:18.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:04:18.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:18.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:18.599][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:04:18.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:04:18.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:18.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:18.603][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:04:18.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:04:18.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:18.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:18.607][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:04:18.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:04:18.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:18.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:18.611][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:04:18.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:04:18.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:18.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:18.614][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:04:18.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:04:18.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:18.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:18.623][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:18.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:18.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:18.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:18.626][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:18.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:18.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:18.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:18.630][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:18.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:18.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:18.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:18.634][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:18.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:18.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:18.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:18.637][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:18.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:18.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:18.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:18.641][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:18.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:18.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:18.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:18.645][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-06-28 16:04:18.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:04:18.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:18.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:18.648][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-06-28 16:04:18.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:04:18.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:18.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:18.652][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-06-28 16:04:18.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:04:18.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:18.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:18.655][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:04:18.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:04:18.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:18.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:18.659][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:04:18.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:04:18.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:18.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:18.663][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:04:18.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:04:18.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:18.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:18.666][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:04:18.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:04:18.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:18.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:18.670][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:04:18.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:04:18.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:18.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:18.674][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:04:18.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:04:18.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:18.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:18.682][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [62447, 0, 62447, C30H50, InChI=1S/C30H50/c1-21(2)11-9-12-22(3)23-15-19-29(7)24(23)13-14-26-28(6)18-10-17-27(4,5)25(28)16-20-30(26,29)8/h11,23-26H,3,9-10,12-20H2,1-2,4-8H3/t23-,24-,25+,26-,28+,29-,30-/m1/s1, ...].
biodb.DEBUG[2025-06-28 16:04:18.683][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-06-28 16:04:18.684][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-06-28 16:04:18.687][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:04:18.688][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:04:18.688][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:04:18.693][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:04:18.693][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:04:18.694][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:04:18.695][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-06-28 16:04:18.697][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=480.29*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-06-28 16:04:18.700][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-06-28 16:04:18.702][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/aad5aa7c63b98774a5df46d96a4e7cac.content.
sched.DEBUG[2025-06-28 16:04:18.703][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-06-28 16:04:18.705][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:04:18.706][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:04:18.707][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:04:18.711][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:04:18.712][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:04:18.713][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:04:18.713][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:04:18.714][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:18.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:18.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:18.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:18.718][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:18.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:18.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:18.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:18.722][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:18.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:18.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:18.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:04:18.725][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:04:18.726][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:04:18.727][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:04:18.731][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:04:18.732][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:04:18.732][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:04:18.733][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:04:18.734][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:18.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:18.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:18.737][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:18.738][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:18.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:18.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:18.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:18.742][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:18.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:18.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:18.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:04:18.745][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:04:18.746][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:04:18.747][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:04:18.751][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:04:18.752][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:04:18.753][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:04:18.753][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:04:18.754][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:18.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:18.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:18.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:18.758][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:18.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:18.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:18.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:18.762][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:18.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:18.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:18.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:04:18.765][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-06-28 16:04:18.767][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:04:18.768][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:04:18.769][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:04:18.772][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:04:18.773][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:04:18.774][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:04:18.775][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:04:18.776][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:04:18.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:04:18.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:18.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:18.780][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:04:18.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:04:18.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:18.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:18.783][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:04:18.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:04:18.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:18.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:18.787][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:04:18.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:04:18.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:18.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:18.790][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:18.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:18.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:18.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:18.794][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:18.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:18.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:18.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:18.798][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:04:18.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:04:18.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:18.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:18.801][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:04:18.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:04:18.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:18.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:18.805][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:04:18.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:04:18.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:18.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:18.809][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:04:18.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:04:18.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:18.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:18.812][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:04:18.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:04:18.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:18.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:18.816][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:04:18.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:04:18.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:18.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:18.819][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:18.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:18.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:18.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:18.823][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:18.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:18.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:18.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:18.827][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:18.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:18.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:18.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:18.830][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:18.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:18.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:18.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:18.834][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:18.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:18.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:18.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:18.837][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:18.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:18.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:18.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:18.841][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-06-28 16:04:18.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:04:18.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:18.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:18.845][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-06-28 16:04:18.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:04:18.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:18.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:18.848][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:04:18.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:04:18.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:18.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:18.852][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:04:18.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:04:18.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:18.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:18.855][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:04:18.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:04:18.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:18.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:18.864][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:04:18.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:04:18.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:18.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:18.868][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-06-28 16:04:18.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-06-28 16:04:18.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:18.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:18.871][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-06-28 16:04:18.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-06-28 16:04:18.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:18.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:18.875][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-06-28 16:04:18.876][private$selectFields]
biodb.TRACE[2025-06-28 16:04:18.876][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-06-28 16:04:18.877][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-06-28 16:04:18.878][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-06-28 16:04:18.879][ef$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:04:18.880][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:04:18.881][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:18.882][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:18.883][ef$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:04:18.884][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:04:18.884][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:18.885][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:18.886][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:18.887][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:18.888][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:18.889][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:18.890][ef$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:04:18.891][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:04:18.891][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:18.892][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:18.893][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:04:18.894][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:04:18.895][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:18.896][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:18.897][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:04:18.898][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:04:18.898][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:18.899][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:18.900][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:18.901][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:18.902][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:18.903][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:18.904][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:18.905][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:18.905][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:18.906][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:18.907][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:18.908][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:18.909][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:18.910][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:18.911][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-06-28 16:04:18.912][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:04:18.913][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:18.913][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:18.914][ef$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:04:18.915][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:04:18.916][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:18.917][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:18.918][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:04:18.919][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:04:18.920][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:18.920][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:18.921][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-06-28 16:04:18.922][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-06-28 16:04:18.923][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:18.924][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:18.925][ef$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:04:18.926][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:04:18.927][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:18.928][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:18.928][ef$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:04:18.929][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:04:18.930][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:18.931][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:18.932][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:18.933][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:18.934][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:18.935][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:18.935][ef$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:04:18.936][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:04:18.937][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:18.938][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:18.939][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:04:18.940][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:04:18.941][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:18.942][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:18.942][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:04:18.943][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:04:18.944][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:18.945][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:18.946][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:18.947][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:18.948][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:18.949][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:18.949][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:18.950][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:18.951][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:18.952][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:18.953][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:18.954][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:18.955][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:18.956][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:18.957][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-06-28 16:04:18.958][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:04:18.958][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:18.959][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:18.960][ef$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:04:18.961][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:04:18.962][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:18.963][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:18.964][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:04:18.965][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:04:18.965][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:18.966][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:18.967][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-06-28 16:04:18.968][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-06-28 16:04:18.969][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:18.970][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:18.971][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-06-28 16:04:18.972][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-06-28 16:04:18.973][ef$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:04:18.973][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:04:18.974][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:18.975][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:18.976][ef$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:04:18.977][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:04:18.978][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:18.979][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:18.980][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:18.981][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:18.981][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:18.982][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:18.983][ef$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:04:18.984][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:04:18.985][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:18.986][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:18.987][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:04:18.988][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:04:18.988][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:18.989][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:18.990][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:04:18.991][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:04:18.992][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:18.993][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:18.994][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:18.995][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:18.996][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:18.996][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:18.997][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:18.998][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:18.999][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:19.000][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:19.001][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:19.002][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:19.003][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:19.004][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:19.004][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-06-28 16:04:19.005][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:04:19.006][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:19.007][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:19.008][ef$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:04:19.009][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:04:19.010][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:19.011][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:19.012][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:04:19.013][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:04:19.013][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:19.014][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:19.015][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-06-28 16:04:19.016][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:04:19.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:04:19.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:19.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:19.020][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:04:19.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:04:19.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:19.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:19.024][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:04:19.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:04:19.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:19.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:19.027][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:04:19.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:04:19.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:19.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:19.031][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:04:19.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:04:19.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:19.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:19.035][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:04:19.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:04:19.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:19.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:19.038][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:19.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:19.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:19.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:19.042][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:19.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:19.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:19.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:19.046][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:19.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:19.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:19.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:19.049][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:04:19.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:04:19.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:19.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:19.053][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:04:19.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:04:19.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:19.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:19.057][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:04:19.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:04:19.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:19.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:19.060][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:04:19.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:04:19.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:19.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:19.064][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:04:19.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:04:19.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:19.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:19.068][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:04:19.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:04:19.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:19.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:19.071][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:04:19.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:04:19.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:19.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:19.075][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:04:19.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:04:19.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:19.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:19.079][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:04:19.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:04:19.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:19.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:19.082][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:19.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:19.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:19.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:19.086][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:19.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:19.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:19.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:19.090][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:19.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:19.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:19.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:19.093][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:19.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:19.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:19.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:19.097][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:19.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:19.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:19.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:19.105][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:19.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:19.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:19.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:19.109][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:19.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:19.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:19.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:19.113][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:19.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:19.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:19.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:19.116][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:19.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:19.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:19.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:19.120][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-06-28 16:04:19.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:04:19.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:19.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:19.123][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-06-28 16:04:19.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:04:19.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:19.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:19.127][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-06-28 16:04:19.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:04:19.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:19.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:19.131][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:04:19.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:04:19.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:19.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:19.134][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:04:19.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:04:19.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:19.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:19.138][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:04:19.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:04:19.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:19.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:19.141][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:04:19.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:04:19.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:19.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:19.145][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:04:19.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:04:19.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:19.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:19.148][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:04:19.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:04:19.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:19.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:19.158][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [4781, 0, 4781, C29H40N2O4, InChI=1S/C29H40N2O4/c1-6-18-17-31-10-8-20-14-27(33-3)29(35-5)16-23(20)25(31)12-21(18)11-24-22-15-28(34-4)26(32-2)13-19(22)7-9-30-24/h13-16,18,21,24-25,30H,6-12,17H2,1-5H3/t18-,21-,24+,25-/m0/s1, ...].
biodb.DEBUG[2025-06-28 16:04:19.159][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:04:19.159][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:04:19.160][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:04:19.164][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:04:19.165][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:04:19.166][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:04:19.167][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:04:19.168][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:04:19.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:04:19.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:19.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:19.171][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:04:19.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:04:19.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:19.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:19.175][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:04:19.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:04:19.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:19.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:19.179][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:04:19.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:04:19.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:19.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:19.182][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:19.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:19.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:19.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:19.186][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:19.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:19.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:19.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:19.189][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:04:19.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:04:19.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:19.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:19.193][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:04:19.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:04:19.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:19.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:19.196][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:04:19.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:04:19.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:19.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:19.200][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:04:19.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:04:19.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:19.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:19.204][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:04:19.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:04:19.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:19.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:19.207][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:04:19.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:04:19.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:19.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:19.211][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:19.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:19.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:19.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:19.214][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:19.215][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:19.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:19.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:19.218][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:19.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:19.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:19.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:19.221][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:19.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:19.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:19.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:19.225][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:19.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:19.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:19.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:19.229][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:19.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:19.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:19.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:19.232][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-06-28 16:04:19.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:04:19.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:19.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:19.236][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-06-28 16:04:19.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:04:19.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:19.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:19.239][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:04:19.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:04:19.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:19.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:19.243][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:04:19.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:04:19.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:19.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:19.247][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:04:19.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:04:19.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:19.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:19.250][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:04:19.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:04:19.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:19.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:19.254][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-06-28 16:04:19.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-06-28 16:04:19.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:19.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:19.257][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-06-28 16:04:19.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-06-28 16:04:19.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:19.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:19.261][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-06-28 16:04:19.262][private$selectFields]
biodb.TRACE[2025-06-28 16:04:19.263][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-06-28 16:04:19.264][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-06-28 16:04:19.265][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-06-28 16:04:19.265][ef$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:04:19.266][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:04:19.267][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:19.268][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:19.269][ef$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:04:19.270][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:04:19.271][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:19.272][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:19.273][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:19.274][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:19.274][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:19.275][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:19.276][ef$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:04:19.277][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:04:19.278][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:19.279][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:19.280][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:04:19.281][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:04:19.282][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:19.282][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:19.283][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:04:19.284][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:04:19.285][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:19.286][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:19.287][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:19.288][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:19.289][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:19.290][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:19.290][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:19.291][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:19.292][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:19.293][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:19.294][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:19.295][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:19.296][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:19.297][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:19.298][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-06-28 16:04:19.299][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:04:19.299][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:19.300][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:19.301][ef$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:04:19.302][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:04:19.303][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:19.304][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:19.305][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:04:19.306][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:04:19.307][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:19.307][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:19.308][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-06-28 16:04:19.309][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-06-28 16:04:19.310][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:19.311][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:19.312][ef$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:04:19.313][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:04:19.314][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:19.315][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:19.315][ef$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:04:19.316][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:04:19.317][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:19.318][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:19.319][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:19.320][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:19.321][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:19.322][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:19.323][ef$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:04:19.324][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:04:19.324][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:19.325][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:19.326][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:04:19.327][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:04:19.328][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:19.329][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:19.330][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:04:19.331][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:04:19.332][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:19.332][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:19.333][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:19.334][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:19.335][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:19.336][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:19.343][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:19.345][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:19.346][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:19.347][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:19.348][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:19.348][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:19.349][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:19.350][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:19.351][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-06-28 16:04:19.352][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:04:19.353][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:19.354][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:19.355][ef$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:04:19.356][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:04:19.356][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:19.357][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:19.358][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:04:19.359][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:04:19.360][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:19.361][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:19.362][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-06-28 16:04:19.363][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-06-28 16:04:19.364][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:19.364][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:19.365][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-06-28 16:04:19.366][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-06-28 16:04:19.367][ef$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:04:19.368][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:04:19.369][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:19.370][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:19.371][ef$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:04:19.372][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:04:19.372][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:19.373][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:19.374][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:19.375][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:19.376][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:19.377][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:19.378][ef$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:04:19.379][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:04:19.379][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:19.380][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:19.381][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:04:19.382][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:04:19.383][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:19.384][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:19.385][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:04:19.386][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:04:19.386][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:19.387][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:19.388][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:19.389][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:19.390][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:19.391][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:19.392][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:19.393][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:19.393][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:19.394][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:19.395][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-06-28 16:04:19.396][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:04:19.397][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:19.398][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:19.399][ef$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:04:19.400][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:04:19.401][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:19.401][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:19.402][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:04:19.403][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:04:19.404][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:19.405][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:19.406][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-06-28 16:04:19.407][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:04:19.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:04:19.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:19.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:19.410][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:04:19.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:04:19.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:19.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:19.414][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:04:19.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:04:19.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:19.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:19.418][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:04:19.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:04:19.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:19.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:19.421][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:04:19.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:04:19.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:19.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:19.425][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:04:19.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:04:19.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:19.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:19.428][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:19.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:19.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:19.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:19.432][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:19.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:19.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:19.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:19.436][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:19.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:19.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:19.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:19.439][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:04:19.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:04:19.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:19.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:19.443][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:04:19.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:04:19.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:19.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:19.446][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:04:19.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:04:19.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:19.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:19.450][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:04:19.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:04:19.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:19.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:19.454][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:04:19.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:04:19.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:19.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:19.457][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:04:19.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:04:19.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:19.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:19.461][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:04:19.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:04:19.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:19.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:19.465][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:04:19.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:04:19.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:19.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:19.468][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:04:19.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:04:19.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:19.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:19.472][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:19.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:19.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:19.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:19.475][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:19.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:19.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:19.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:19.479][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:19.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:19.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:19.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:19.483][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:19.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:19.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:19.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:19.486][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:19.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:19.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:19.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:19.490][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:19.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:19.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:19.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:19.494][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-06-28 16:04:19.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:04:19.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:19.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:19.497][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-06-28 16:04:19.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:04:19.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:19.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:19.501][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-06-28 16:04:19.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:04:19.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:19.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:19.505][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:04:19.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:04:19.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:19.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:19.508][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:04:19.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:04:19.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:19.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:19.512][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:04:19.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:04:19.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:19.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:19.516][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:04:19.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:04:19.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:19.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:19.519][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:04:19.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:04:19.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:19.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:19.523][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:04:19.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:04:19.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:19.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:19.532][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [91601, 0, 91601, C29H40N2O4, InChI=1S/C29H40N2O4/c1-6-18-17-31-10-8-20-14-27(33-3)29(35-5)16-23(20)25(31)12-21(18)11-24-22-15-28(34-4)26(32-2)13-19(22)7-9-30-24/h13-16,18,21,24-25,30H,6-12,17H2,1-5H3/t18-,21-,24?,25?/m0/s1, ...].
biodb.DEBUG[2025-06-28 16:04:19.533][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:04:19.533][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:04:19.534][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:04:19.538][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:04:19.539][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:04:19.540][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:04:19.541][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:04:19.542][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:04:19.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:04:19.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:19.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:19.546][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:04:19.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:04:19.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:19.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:19.549][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:04:19.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:04:19.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:19.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:19.553][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:04:19.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:04:19.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:19.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:19.556][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:19.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:19.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:19.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:19.560][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:19.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:19.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:19.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:19.564][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:04:19.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:04:19.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:19.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:19.567][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:04:19.568][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:04:19.569][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:19.570][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:19.571][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:04:19.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:04:19.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:19.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:19.574][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:04:19.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:04:19.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:19.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:19.578][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:04:19.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:04:19.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:19.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:19.586][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:04:19.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:04:19.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:19.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:19.590][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:19.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:19.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:19.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:19.594][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:19.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:19.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:19.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:19.597][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:19.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:19.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:19.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:19.601][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:19.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:19.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:19.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:19.604][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:19.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:19.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:19.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:19.608][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:19.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:19.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:19.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:19.612][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-06-28 16:04:19.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:04:19.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:19.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:19.615][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-06-28 16:04:19.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:04:19.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:19.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:19.619][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:04:19.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:04:19.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:19.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:19.622][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:04:19.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:04:19.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:19.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:19.626][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:04:19.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:04:19.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:19.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:19.629][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:04:19.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:04:19.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:19.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:19.633][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-06-28 16:04:19.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-06-28 16:04:19.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:19.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:19.636][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-06-28 16:04:19.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-06-28 16:04:19.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:19.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:19.640][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-06-28 16:04:19.641][private$selectFields]
biodb.TRACE[2025-06-28 16:04:19.642][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-06-28 16:04:19.643][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-06-28 16:04:19.643][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-06-28 16:04:19.644][ef$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:04:19.645][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:04:19.646][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:19.647][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:19.648][ef$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:04:19.649][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:04:19.650][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:19.651][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:19.651][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:19.652][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:19.653][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:19.654][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:19.655][ef$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:04:19.656][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:04:19.657][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:19.658][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:19.658][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:04:19.659][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:04:19.660][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:19.661][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:19.662][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:04:19.663][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:04:19.664][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:19.665][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:19.665][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:19.666][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:19.667][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:19.668][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:19.669][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:19.670][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:19.671][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:19.672][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:19.673][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:19.673][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:19.674][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:19.675][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:19.676][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-06-28 16:04:19.677][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:04:19.678][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:19.679][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:19.680][ef$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:04:19.680][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:04:19.681][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:19.682][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:19.683][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:04:19.684][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:04:19.685][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:19.686][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:19.687][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-06-28 16:04:19.688][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-06-28 16:04:19.688][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:19.689][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:19.690][ef$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:04:19.691][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:04:19.692][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:19.693][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:19.694][ef$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:04:19.695][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:04:19.695][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:19.696][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:19.697][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:19.698][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:19.699][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:19.700][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:19.701][ef$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:04:19.702][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:04:19.703][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:19.703][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:19.704][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:04:19.705][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:04:19.706][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:19.707][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:19.708][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:04:19.709][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:04:19.710][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:19.710][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:19.711][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:19.712][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:19.713][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:19.714][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:19.715][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:19.716][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:19.717][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:19.717][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:19.718][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:19.719][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:19.720][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:19.721][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:19.722][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-06-28 16:04:19.723][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:04:19.724][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:19.725][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:19.725][ef$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:04:19.726][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:04:19.727][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:19.728][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:19.729][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:04:19.730][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:04:19.731][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:19.732][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:19.733][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-06-28 16:04:19.734][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-06-28 16:04:19.735][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:19.735][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:19.736][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-06-28 16:04:19.737][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-06-28 16:04:19.738][ef$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:04:19.739][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:04:19.740][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:19.741][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:19.742][ef$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:04:19.743][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:04:19.743][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:19.744][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:19.745][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:19.746][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:19.747][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:19.748][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:19.749][ef$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:04:19.750][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:04:19.751][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:19.751][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:19.752][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:04:19.753][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:04:19.754][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:19.755][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:19.756][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:04:19.757][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:04:19.758][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:19.759][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:19.759][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:19.760][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:19.761][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:19.762][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:19.763][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:19.764][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:19.765][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:19.766][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:19.767][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-06-28 16:04:19.767][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:04:19.768][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:19.769][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:19.770][ef$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:04:19.771][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:04:19.772][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:19.773][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:19.774][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:04:19.775][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:04:19.775][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:19.776][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:19.777][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-06-28 16:04:19.778][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:04:19.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:04:19.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:19.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:19.782][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:04:19.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:04:19.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:19.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:19.786][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:04:19.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:04:19.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:19.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:19.789][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:04:19.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:04:19.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:19.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:19.793][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:04:19.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:04:19.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:19.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:19.797][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:04:19.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:04:19.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:19.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:19.800][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:19.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:19.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:19.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:19.804][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:19.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:19.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:19.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:19.808][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:19.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:19.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:19.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:19.818][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:04:19.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:04:19.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:19.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:19.823][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:04:19.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:04:19.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:19.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:19.827][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:04:19.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:04:19.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:19.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:19.849][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:04:19.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:04:19.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:19.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:19.855][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:04:19.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:04:19.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:19.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:19.860][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:04:19.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:04:19.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:19.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:19.864][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:04:19.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:04:19.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:19.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:19.868][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:04:19.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:04:19.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:19.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:19.872][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:04:19.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:04:19.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:19.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:19.876][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:19.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:19.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:19.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:19.880][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:19.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:19.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:19.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:19.884][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:19.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:19.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:19.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:19.888][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:19.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:19.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:19.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:19.892][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:19.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:19.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:19.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:19.896][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:19.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:19.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:19.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:19.900][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-06-28 16:04:19.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:04:19.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:19.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:19.904][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-06-28 16:04:19.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:04:19.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:19.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:19.908][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-06-28 16:04:19.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:04:19.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:19.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:19.912][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:04:19.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:04:19.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:19.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:19.916][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:04:19.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:04:19.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:19.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:19.920][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:04:19.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:04:19.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:19.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:19.924][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:04:19.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:04:19.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:19.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:19.928][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:04:19.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:04:19.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:19.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:19.932][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:04:19.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:04:19.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:19.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:19.942][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [95147, 0, 95147, C29H40N2O4, InChI=1S/C29H40N2O4/c1-3-18-16(2)14-22-20(18)10-11-21-19-6-4-8-26(33)30-13-5-7-24-28(34)27(29(35)31-24)25(32)12-9-17(19)15-23(21)22/h4,8,10-11,16-24,27H,3,5-7,9,12-15H2,1-2H3,(H,30,33)(H,31,35)/t16-,17-,18-,19+,20+,21-,22+,23+,24+,27?/m1/s1, ...].
biodb.DEBUG[2025-06-28 16:04:19.943][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-06-28 16:04:19.943][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-06-28 16:04:19.947][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:04:19.948][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:04:19.948][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:04:19.953][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:04:19.954][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:04:19.955][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:04:19.956][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
sched.DEBUG[2025-06-28 16:04:19.959][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.17*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
fscache.INFO [2025-06-28 16:04:19.962][private$cache$loadContents] Load 1 contents, from /home/biocbuild/.cache/R/sched.
fscache.DEBUG[2025-06-28 16:04:19.966][FUN] Found encoding ISO-8859-1 for file /home/biocbuild/.cache/R/sched/039d0a183be9e894c19f49abb7cadca8.content.
sched.DEBUG[2025-06-28 16:04:19.967][self$getBiodb()$getRequestScheduler( ...] Content loaded from cache.
biodb.DEBUG[2025-06-28 16:04:19.970][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:04:19.971][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:04:19.972][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:04:19.976][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:04:19.977][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:04:19.978][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:04:19.979][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:04:19.980][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:19.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:19.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:19.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:19.984][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:19.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:19.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:19.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:19.988][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:19.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:19.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:19.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:04:19.992][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:04:19.993][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:04:19.994][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:04:19.998][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:04:19.999][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:04:20.000][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:04:20.001][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:04:20.002][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:20.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:20.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:20.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:20.006][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:20.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:20.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:20.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:20.010][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:20.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:20.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:20.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:04:20.014][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:04:20.015][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:04:20.016][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:04:20.020][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:04:20.021][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:04:20.022][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:04:20.023][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:04:20.024][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:20.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:20.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:20.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:20.028][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:20.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:20.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:20.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:20.032][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:20.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:20.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:20.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-06-28 16:04:20.036][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-06-28 16:04:20.038][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:04:20.039][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:04:20.039][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:04:20.044][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:04:20.045][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:04:20.045][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:04:20.046][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:04:20.048][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:04:20.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:04:20.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:20.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:20.052][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:04:20.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:04:20.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:20.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:20.055][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:04:20.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:04:20.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:20.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:20.059][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:04:20.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:04:20.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:20.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:20.063][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:20.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:20.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:20.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:20.067][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:20.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:20.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:20.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:20.071][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:04:20.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:04:20.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:20.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:20.075][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:04:20.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:04:20.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:20.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:20.079][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:04:20.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:04:20.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:20.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:20.083][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:04:20.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:04:20.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:20.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:20.087][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:04:20.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:04:20.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:20.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:20.091][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:04:20.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:04:20.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:20.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:20.095][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:20.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:20.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:20.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:20.099][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:20.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:20.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:20.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:20.103][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:20.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:20.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:20.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:20.106][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:20.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:20.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:20.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:20.110][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:20.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:20.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:20.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:20.114][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:20.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:20.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:20.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:20.122][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-06-28 16:04:20.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:04:20.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:20.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:20.126][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-06-28 16:04:20.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:04:20.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:20.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:20.130][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:04:20.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:04:20.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:20.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:20.133][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:04:20.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:04:20.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:20.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:20.137][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:04:20.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:04:20.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:20.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:20.140][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:04:20.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:04:20.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:20.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:20.144][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-06-28 16:04:20.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-06-28 16:04:20.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:20.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:20.148][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-06-28 16:04:20.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-06-28 16:04:20.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:20.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:20.151][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-06-28 16:04:20.152][private$selectFields]
biodb.TRACE[2025-06-28 16:04:20.153][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-06-28 16:04:20.154][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-06-28 16:04:20.155][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-06-28 16:04:20.155][ef$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:04:20.156][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:04:20.157][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:20.158][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:20.159][ef$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:04:20.160][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:04:20.161][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:20.162][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:20.162][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:20.163][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:20.164][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:20.165][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:20.166][ef$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:04:20.167][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:04:20.168][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:20.169][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:20.170][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:04:20.170][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:04:20.171][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:20.172][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:20.173][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:04:20.174][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:04:20.175][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:20.176][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:20.177][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:20.178][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:20.178][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:20.179][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:20.180][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:20.181][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:20.182][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:20.183][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:20.184][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:20.185][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:20.186][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:20.186][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:20.187][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-06-28 16:04:20.188][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:04:20.189][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:20.190][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:20.191][ef$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:04:20.192][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:04:20.193][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:20.193][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:20.194][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:04:20.195][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:04:20.196][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:20.197][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:20.198][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-06-28 16:04:20.199][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-06-28 16:04:20.200][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:20.201][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:20.201][ef$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:04:20.202][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:04:20.203][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:20.204][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:20.205][ef$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:04:20.206][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:04:20.207][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:20.208][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:20.209][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:20.209][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:20.210][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:20.211][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:20.212][ef$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:04:20.213][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:04:20.214][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:20.215][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:20.216][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:04:20.217][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:04:20.217][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:20.218][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:20.219][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:04:20.220][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:04:20.221][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:20.222][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:20.223][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:20.224][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:20.225][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:20.225][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:20.226][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:20.227][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:20.228][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:20.229][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:20.230][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:20.231][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:20.232][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:20.233][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:20.233][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-06-28 16:04:20.234][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:04:20.235][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:20.236][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:20.237][ef$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:04:20.238][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:04:20.239][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:20.240][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:20.241][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:04:20.242][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:04:20.242][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:20.243][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:20.244][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-06-28 16:04:20.245][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-06-28 16:04:20.246][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:20.247][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:20.248][private$selectFields] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-06-28 16:04:20.249][private$organizeFieldsByGroups] Fields [12]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-06-28 16:04:20.250][ef$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:04:20.251][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:04:20.251][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:20.252][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:20.253][ef$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:04:20.254][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:04:20.255][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:20.256][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:20.257][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:20.258][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:20.258][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:20.259][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:20.260][ef$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:04:20.261][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:04:20.262][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:20.263][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:20.264][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:04:20.265][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:04:20.266][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:20.267][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:20.267][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:04:20.268][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:04:20.269][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:20.270][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:20.271][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:20.272][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:20.273][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:20.274][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:20.275][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:20.276][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:20.276][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:20.277][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:20.278][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:20.279][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:20.280][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:20.281][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:20.282][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-06-28 16:04:20.283][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:04:20.284][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:20.285][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:20.285][ef$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:04:20.286][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:04:20.287][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:20.288][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:20.289][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:04:20.290][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:04:20.291][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:20.292][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:20.293][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "kegg.compound.id", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-06-28 16:04:20.294][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:04:20.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:04:20.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:20.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:20.297][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:04:20.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:04:20.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:20.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:20.301][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:04:20.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:04:20.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:20.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:20.305][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:04:20.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:04:20.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:20.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:20.309][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:04:20.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:04:20.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:20.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:20.312][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:04:20.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:04:20.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:20.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:20.316][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:20.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:20.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:20.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:20.320][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:20.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:20.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:20.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:20.323][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:20.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:20.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:20.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:20.327][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:04:20.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:04:20.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:20.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:20.331][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:04:20.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:04:20.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:20.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:20.334][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:04:20.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:04:20.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:20.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:20.338][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:04:20.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:04:20.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:20.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:20.342][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:04:20.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:04:20.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:20.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:20.345][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:04:20.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:04:20.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:20.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:20.349][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:04:20.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:04:20.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:20.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:20.353][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:04:20.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:04:20.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:20.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:20.356][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:04:20.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:04:20.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:20.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:20.365][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:20.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:20.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:20.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:20.369][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:20.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:20.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:20.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:20.373][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:20.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:20.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:20.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:20.376][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:20.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:20.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:20.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:20.380][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:20.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:20.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:20.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:20.383][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:20.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:20.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:20.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:20.387][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:20.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:20.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:20.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:20.391][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:20.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:20.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:20.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:20.394][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:20.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:20.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:20.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:20.398][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-06-28 16:04:20.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:04:20.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:20.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:20.402][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-06-28 16:04:20.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:04:20.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:20.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:20.405][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-06-28 16:04:20.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:04:20.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:20.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:20.409][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:04:20.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:04:20.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:20.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:20.412][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:04:20.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:04:20.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:20.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:20.416][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:04:20.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:04:20.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:20.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:20.420][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:04:20.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:04:20.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:20.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:20.423][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:04:20.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:04:20.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:20.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:20.427][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:04:20.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:04:20.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:20.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:20.436][private$entriesToListOfDataframes] Entry converted to data frame: [1, 12]: [accession, charge, chebi.id, formula, inchi, ...] [636, 0, 636, C24H26O6, InChI=1S/C24H26O6/c1-12(2)6-7-14-19-17(11-16(26)22(14)28-5)29-18-10-15(25)13-8-9-24(3,4)30-23(13)20(18)21(19)27/h6,10-11,25-26H,7-9H2,1-5H3, ...].
biodb.DEBUG[2025-06-28 16:04:20.437][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:04:20.438][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:04:20.439][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:04:20.443][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:04:20.444][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:04:20.445][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:04:20.445][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:04:20.447][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:04:20.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:04:20.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:20.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:20.450][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:04:20.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:04:20.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:20.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:20.454][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:04:20.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:04:20.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:20.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:20.457][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:04:20.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:04:20.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:20.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:20.461][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:20.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:20.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:20.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:20.465][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:20.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:20.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:20.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:20.468][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:04:20.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:04:20.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:20.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:20.472][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:04:20.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:04:20.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:20.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:20.475][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:04:20.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:04:20.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:20.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:20.479][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:04:20.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:04:20.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:20.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:20.483][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:04:20.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:04:20.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:20.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:20.486][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:04:20.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:04:20.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:20.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:20.490][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:20.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:20.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:20.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:20.493][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:20.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:20.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:20.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:20.497][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:20.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:20.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:20.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:20.500][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:20.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:20.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:20.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:20.504][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:20.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:20.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:20.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:20.508][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:20.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:20.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:20.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:20.511][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-06-28 16:04:20.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:04:20.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:20.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:20.515][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-06-28 16:04:20.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:04:20.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:20.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:20.519][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:04:20.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:04:20.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:20.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:20.522][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:04:20.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:04:20.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:20.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:20.526][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:04:20.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:04:20.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:20.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:20.529][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:04:20.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:04:20.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:20.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:20.533][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-06-28 16:04:20.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-06-28 16:04:20.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:20.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:20.537][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-06-28 16:04:20.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-06-28 16:04:20.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:20.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:20.540][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-06-28 16:04:20.541][private$selectFields]
biodb.TRACE[2025-06-28 16:04:20.542][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-06-28 16:04:20.543][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-06-28 16:04:20.544][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-06-28 16:04:20.545][ef$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:04:20.546][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:04:20.546][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:20.547][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:20.548][ef$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:04:20.549][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:04:20.550][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:20.551][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:20.552][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:20.553][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:20.554][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:20.554][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:20.555][ef$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:04:20.556][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:04:20.557][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:20.558][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:20.559][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:04:20.560][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:04:20.561][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:20.562][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:20.562][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:04:20.563][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:04:20.564][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:20.565][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:20.566][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:20.567][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:20.568][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:20.569][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:20.570][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:20.571][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:20.571][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:20.572][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:20.573][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:20.574][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:20.575][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:20.576][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:20.577][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-06-28 16:04:20.578][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:04:20.579][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:20.579][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:20.580][ef$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:04:20.581][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:04:20.582][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:20.583][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:20.584][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:04:20.585][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:04:20.586][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:20.587][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:20.587][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-06-28 16:04:20.588][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-06-28 16:04:20.589][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:20.590][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:20.591][ef$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:04:20.592][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:04:20.593][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:20.594][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:20.595][ef$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:04:20.596][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:04:20.596][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:20.597][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:20.598][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:20.603][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:20.604][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:20.605][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:20.607][ef$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:04:20.607][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:04:20.608][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:20.609][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:20.610][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:04:20.611][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:04:20.612][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:20.613][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:20.614][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:04:20.615][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:04:20.615][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:20.616][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:20.617][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:20.618][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:20.619][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:20.620][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:20.621][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:20.622][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:20.623][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:20.623][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:20.624][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:20.625][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:20.626][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:20.627][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:20.628][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-06-28 16:04:20.629][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:04:20.630][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:20.630][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:20.631][ef$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:04:20.632][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:04:20.633][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:20.634][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:20.635][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:04:20.636][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:04:20.637][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:20.637][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:20.638][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-06-28 16:04:20.639][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-06-28 16:04:20.640][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:20.641][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:20.642][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-06-28 16:04:20.643][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-06-28 16:04:20.644][ef$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:04:20.645][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:04:20.645][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:20.646][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:20.647][ef$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:04:20.648][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:04:20.649][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:20.650][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:20.651][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:20.652][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:20.652][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:20.653][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:20.654][ef$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:04:20.655][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:04:20.656][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:20.657][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:20.658][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:04:20.659][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:04:20.659][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:20.660][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:20.661][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:04:20.662][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:04:20.663][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:20.664][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:20.665][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:20.666][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:20.667][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:20.667][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:20.668][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:20.669][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:20.670][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:20.671][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:20.672][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-06-28 16:04:20.673][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:04:20.674][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:20.674][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:20.675][ef$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:04:20.676][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:04:20.677][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:20.678][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:20.679][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:04:20.680][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:04:20.681][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:20.682][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:20.682][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-06-28 16:04:20.683][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:04:20.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:04:20.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:20.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:20.687][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:04:20.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:04:20.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:20.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:20.691][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:04:20.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:04:20.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:20.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:20.694][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:04:20.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:04:20.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:20.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:20.698][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:04:20.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:04:20.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:20.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:20.701][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:04:20.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:04:20.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:20.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:20.705][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:20.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:20.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:20.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:20.709][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:20.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:20.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:20.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:20.712][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:20.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:20.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:20.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:20.716][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:04:20.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:04:20.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:20.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:20.720][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:04:20.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:04:20.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:20.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:20.723][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:04:20.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:04:20.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:20.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:20.727][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:04:20.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:04:20.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:20.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:20.730][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:04:20.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:04:20.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:20.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:20.734][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:04:20.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:04:20.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:20.737][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:20.738][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:04:20.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:04:20.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:20.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:20.742][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:04:20.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:04:20.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:20.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:20.745][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:04:20.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:04:20.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:20.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:20.749][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:20.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:20.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:20.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:20.753][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:20.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:20.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:20.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:20.756][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:20.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:20.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:20.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:20.760][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:20.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:20.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:20.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:20.764][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:20.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:20.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:20.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:20.767][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:20.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:20.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:20.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:20.771][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-06-28 16:04:20.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:04:20.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:20.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:20.774][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-06-28 16:04:20.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:04:20.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:20.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:20.778][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-06-28 16:04:20.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:04:20.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:20.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:20.782][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:04:20.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:04:20.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:20.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:20.785][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:04:20.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:04:20.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:20.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:20.789][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:04:20.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:04:20.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:20.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:20.793][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:04:20.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:04:20.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:20.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:20.796][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:04:20.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:04:20.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:20.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:20.800][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:04:20.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:04:20.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:20.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:20.809][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [64199, 0, 64199, C24H27ClN2O2, InChI=1S/C24H26N2O2.ClH/c27-24(28)20-9-10-23-22(16-20)21(17-25-23)8-4-5-13-26-14-11-19(12-15-26)18-6-2-1-3-7-18;/h1-3,6-7,9-11,16-17,25H,4-5,8,12-15H2,(H,27,28);1H, ...].
biodb.DEBUG[2025-06-28 16:04:20.810][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-06-28 16:04:20.811][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:04:20.811][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:04:20.816][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:04:20.816][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:04:20.817][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:04:20.818][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-06-28 16:04:20.819][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:04:20.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:04:20.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:20.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:20.823][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:04:20.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:04:20.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:20.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:20.826][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:04:20.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:04:20.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:20.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:20.830][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:04:20.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:04:20.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:20.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:20.834][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:20.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:20.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:20.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:20.837][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:20.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:20.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:20.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:20.845][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:04:20.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:04:20.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:20.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:20.849][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:04:20.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:04:20.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:20.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:20.853][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:04:20.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:04:20.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:20.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:20.856][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:04:20.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:04:20.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:20.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:20.860][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:04:20.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:04:20.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:20.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:20.864][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:04:20.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:04:20.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:20.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:20.867][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:20.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:20.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:20.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:20.871][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:20.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:20.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:20.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:20.874][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:20.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:20.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:20.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:20.878][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:20.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:20.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:20.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:20.881][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:20.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:20.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:20.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:20.885][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:20.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:20.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:20.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:20.888][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-06-28 16:04:20.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:04:20.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:20.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:20.892][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-06-28 16:04:20.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:04:20.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:20.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:20.896][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:04:20.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:04:20.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:20.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:20.899][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:04:20.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:04:20.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:20.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:20.903][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:04:20.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:04:20.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:20.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:20.906][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:04:20.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:04:20.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:20.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:20.910][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-06-28 16:04:20.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-06-28 16:04:20.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:20.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:20.913][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-06-28 16:04:20.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-06-28 16:04:20.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:20.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:20.917][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-06-28 16:04:20.918][private$selectFields]
biodb.TRACE[2025-06-28 16:04:20.919][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-06-28 16:04:20.919][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-06-28 16:04:20.920][private$selectFields] Fields [13]: "accession, charge, chebi.id, formula, inchi, inchikey, kegg.compound.id, molecular.mass, monoisotopic.mass, n.stars, ..."
biodb.TRACE[2025-06-28 16:04:20.921][ef$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:04:20.922][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:04:20.923][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:20.924][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:20.925][ef$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:04:20.926][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:04:20.927][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:20.927][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:20.928][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:20.929][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:20.930][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:20.931][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:20.932][ef$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:04:20.933][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:04:20.934][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:20.934][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:20.935][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:04:20.936][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:04:20.937][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:20.938][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:20.939][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:04:20.940][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:04:20.941][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:20.941][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:20.942][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:20.943][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:20.944][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:20.945][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:20.946][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:20.947][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:20.948][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:20.948][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:20.949][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:20.950][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:20.951][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:20.952][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:20.953][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-06-28 16:04:20.954][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:04:20.955][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:20.956][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:20.956][ef$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:04:20.957][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:04:20.958][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:20.959][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:20.960][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:04:20.961][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:04:20.962][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:20.963][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:20.963][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-06-28 16:04:20.964][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-06-28 16:04:20.965][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:20.966][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:20.967][ef$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:04:20.968][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:04:20.969][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:20.970][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:20.971][ef$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:04:20.972][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:04:20.972][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:20.973][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:20.974][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:20.975][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:20.976][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:20.977][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:20.978][ef$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:04:20.979][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:04:20.979][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:20.980][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:20.981][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:04:20.982][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:04:20.983][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:20.984][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:20.985][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:04:20.986][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:04:20.987][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:20.987][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:20.988][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:20.989][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-06-28 16:04:20.990][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:20.991][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:20.992][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:20.993][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:20.994][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:20.995][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:20.996][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:20.996][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:20.997][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:20.998][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:20.999][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-06-28 16:04:21.000][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:04:21.001][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:21.002][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:21.003][ef$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:04:21.004][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:04:21.004][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:21.005][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:21.006][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:04:21.007][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:04:21.008][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:21.009][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:21.010][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-06-28 16:04:21.011][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-06-28 16:04:21.012][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:21.012][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:21.013][private$selectFields] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-06-28 16:04:21.014][private$organizeFieldsByGroups] Fields [11]: "accession, charge, chebi.id, formula, inchi, inchikey, molecular.mass, monoisotopic.mass, n.stars, name, ..."
biodb.TRACE[2025-06-28 16:04:21.015][ef$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:04:21.016][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:04:21.017][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:21.018][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:21.019][ef$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:04:21.020][ef$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:04:21.021][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:21.021][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:21.022][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:21.023][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:21.024][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:21.025][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:21.026][ef$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:04:21.027][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:04:21.028][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:21.029][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:21.029][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:04:21.030][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:04:21.031][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:21.032][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:21.033][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:04:21.034][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:04:21.035][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:21.036][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:21.036][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:21.037][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:21.038][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:21.039][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:21.040][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:21.041][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:21.042][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:21.043][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:21.044][ef$get] Asked field names are: n.stars.
biodb.TRACE[2025-06-28 16:04:21.045][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:04:21.045][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:21.046][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:21.047][ef$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:04:21.048][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:04:21.049][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:21.050][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:21.051][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:04:21.052][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:04:21.053][ef$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:21.053][ef$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:21.054][private$organizeFieldsByGroups] Groups [2]: "c("accession", "charge", "chebi.id", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "n.stars", "name", "smiles"), list()"
biodb.TRACE[2025-06-28 16:04:21.055][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:04:21.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:04:21.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:21.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:21.059][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:04:21.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:04:21.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:21.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:21.063][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-06-28 16:04:21.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-06-28 16:04:21.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:21.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:21.066][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:04:21.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:04:21.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:21.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:21.070][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:04:21.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:04:21.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:21.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:21.073][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2025-06-28 16:04:21.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2025-06-28 16:04:21.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:21.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:21.077][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:21.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:21.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:21.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:21.085][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:21.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:21.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:21.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:21.089][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-06-28 16:04:21.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-06-28 16:04:21.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:21.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:21.093][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:04:21.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:04:21.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:21.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:21.097][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:04:21.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:04:21.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:21.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:21.101][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-06-28 16:04:21.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-06-28 16:04:21.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:21.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:21.104][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:04:21.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:04:21.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:21.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:21.108][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:04:21.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:04:21.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:21.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:21.111][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-06-28 16:04:21.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-06-28 16:04:21.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:21.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:21.115][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:04:21.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:04:21.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:21.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:21.119][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:04:21.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:04:21.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:21.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:21.122][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-06-28 16:04:21.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-06-28 16:04:21.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:21.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:21.126][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:21.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:21.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:21.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:21.129][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:21.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:21.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:21.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:21.133][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:21.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-06-28 16:04:21.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:21.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:21.137][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:21.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:21.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:21.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:21.140][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:21.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:21.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:21.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:21.144][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:21.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-06-28 16:04:21.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:21.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:21.147][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-06-28 16:04:21.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:04:21.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:21.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:21.151][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-06-28 16:04:21.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:04:21.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:21.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:21.154][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2025-06-28 16:04:21.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2025-06-28 16:04:21.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:21.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:21.158][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:04:21.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:04:21.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:21.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:21.162][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:04:21.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:04:21.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:21.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:21.165][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-06-28 16:04:21.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-06-28 16:04:21.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:21.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:21.169][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:04:21.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:04:21.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:21.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:21.172][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:04:21.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:04:21.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:21.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:21.176][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-06-28 16:04:21.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-06-28 16:04:21.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:21.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:21.185][private$entriesToListOfDataframes] Entry converted to data frame: [1, 11]: [accession, charge, chebi.id, formula, inchi, ...] [65648, 0, 65648, C24H26O6, InChI=1S/C24H26O6/c1-13(2)9-10-23-20(27)22(28-5)11-14-19(26)18-15(25)7-6-8-16(18)29-24(14,23)17(12-22)21(3,4)30-23/h6-9,11,17,25H,10,12H2,1-5H3/t17-,22-,23-,24+/m0/s1, ...].
biodb.DEBUG[2025-06-28 16:04:21.186][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-06-28 16:04:21.186][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2025-06-28 16:04:21.192][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2025-06-28 16:04:21.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2025-06-28 16:04:21.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:21.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:21.195][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2025-06-28 16:04:21.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2025-06-28 16:04:21.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:21.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-06-28 16:04:21.199][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2025-06-28 16:04:21.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2025-06-28 16:04:21.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-06-28 16:04:21.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2025-06-28 16:04:21.205][biodb$terminate] Closing BiodbMain instance...
biodb.INFO [2025-06-28 16:04:21.206][self$deleteConn] Connector "chebi" deleted.
biodb.DEBUG[2025-06-28 16:04:21.207][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2025-06-28 16:04:21.208][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-06-28 16:04:21.208][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-06-28 16:04:21.209][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2025-06-28 16:04:21.210][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-06-28 16:04:21.211][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2025-06-28 16:04:21.212][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 1371 ]
>
> proc.time()
user system elapsed
78.234 1.870 161.196
##############################################################################
##############################################################################
###
### Running command:
###
### /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD check --test-dir=longtests --no-stop-on-test-error --no-codoc --no-examples --no-manual --ignore-vignettes --check-subdirs=no biodbChebi_1.15.1.tar.gz
###
##############################################################################
##############################################################################
* using log directory ‘/home/biocbuild/bbs-3.22-bioc-longtests/meat/biodbChebi.Rcheck’
* using R version 4.5.1 (2025-06-13)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
gcc (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
GNU Fortran (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
* running under: Ubuntu 24.04.2 LTS
* using session charset: UTF-8
* using options ‘--no-codoc --no-examples --no-manual --ignore-vignettes --no-stop-on-test-error’
* checking for file ‘biodbChebi/DESCRIPTION’ ... OK
* this is package ‘biodbChebi’ version ‘1.15.1’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘biodbChebi’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... SKIPPED
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... SKIPPED
* checking examples ... SKIPPED
* checking for unstated dependencies in ‘longtests’ ... OK
* checking tests in ‘longtests’ ...
Running ‘testthat.R’
OK
* DONE
Status: OK
biodbChebi.Rcheck/00install.out
* installing *source* package ‘biodbChebi’ ... ** this is package ‘biodbChebi’ version ‘1.15.1’ ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (biodbChebi)