Kevin Rue-Albrecht
| Snapshot Date: 2024-08-06 14:00 -0400 (Tue, 06 Aug 2024) |
| git_url: https://git.bioconductor.org/packages/velociraptor |
| git_branch: devel |
| git_last_commit: 209fda9 |
| git_last_commit_date: 2024-06-26 09:47:59 -0400 (Wed, 26 Jun 2024) |
| Back to Multiple platform build/check report for BioC 3.20: simplified long |
|
This page was generated on 2024-08-07 11:47 -0400 (Wed, 07 Aug 2024).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 22.04.3 LTS) | x86_64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4701 |
| palomino8 | Windows Server 2022 Datacenter | x64 | 4.4.1 (2024-06-14 ucrt) -- "Race for Your Life" | 4400 |
| lconway | macOS 12.7.1 Monterey | x86_64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4469 |
| kjohnson3 | macOS 13.6.5 Ventura | arm64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4418 |
| kunpeng2 | Linux (openEuler 22.03 LTS-SP1) | aarch64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4411 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 2211/2254 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| velociraptor 1.15.4 (landing page) Kevin Rue-Albrecht
| nebbiolo2 | Linux (Ubuntu 22.04.3 LTS) / x86_64 | OK | ERROR | skipped | |||||||||
| palomino8 | Windows Server 2022 Datacenter / x64 | OK | ERROR | skipped | skipped | |||||||||
| lconway | macOS 12.7.1 Monterey / x86_64 | OK | OK | OK | OK | | ||||||||
| kjohnson3 | macOS 13.6.5 Ventura / arm64 | OK | OK | OK | OK | | ||||||||
| kunpeng2 | Linux (openEuler 22.03 LTS-SP1) / aarch64 | OK | ERROR | skipped | ||||||||||
|
To the developers/maintainers of the velociraptor package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/velociraptor.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. - See Martin Grigorov's blog post for how to debug Linux ARM64 related issues on a x86_64 host. |
| Package: velociraptor |
| Version: 1.15.4 |
| Command: /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data velociraptor |
| StartedAt: 2024-08-07 02:02:18 -0000 (Wed, 07 Aug 2024) |
| EndedAt: 2024-08-07 02:04:50 -0000 (Wed, 07 Aug 2024) |
| EllapsedTime: 152.2 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
##############################################################################
##############################################################################
###
### Running command:
###
### /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data velociraptor
###
##############################################################################
##############################################################################
* checking for file ‘velociraptor/DESCRIPTION’ ... OK
* preparing ‘velociraptor’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘velociraptor.Rmd’ using rmarkdown
Channels:
- bioconda
- conda-forge
Platform: linux-aarch64
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done
## Package Plan ##
environment location: /home/biocbuild/.cache/R/basilisk/1.17.2/velociraptor/1.15.4/env
added / updated specs:
- python=3.8.6
The following NEW packages will be INSTALLED:
_openmp_mutex conda-forge/linux-aarch64::_openmp_mutex-4.5-2_gnu
ca-certificates conda-forge/linux-aarch64::ca-certificates-2024.7.4-hcefe29a_0
ld_impl_linux-aar~ conda-forge/linux-aarch64::ld_impl_linux-aarch64-2.40-h9fc2d93_7
libffi conda-forge/linux-aarch64::libffi-3.3-h884eca8_2
libgcc-ng conda-forge/linux-aarch64::libgcc-ng-14.1.0-he277a41_0
libgomp conda-forge/linux-aarch64::libgomp-14.1.0-he277a41_0
libsqlite conda-forge/linux-aarch64::libsqlite-3.46.0-hf51ef55_0
libstdcxx-ng conda-forge/linux-aarch64::libstdcxx-ng-14.1.0-h3f4de04_0
libzlib conda-forge/linux-aarch64::libzlib-1.2.13-h68df207_6
ncurses conda-forge/linux-aarch64::ncurses-6.5-h0425590_0
openssl conda-forge/linux-aarch64::openssl-1.1.1w-h31becfc_0
pip conda-forge/noarch::pip-24.2-pyhd8ed1ab_0
python conda-forge/linux-aarch64::python-3.8.6-h3bd6a85_5_cpython
readline conda-forge/linux-aarch64::readline-8.2-h8fc344f_1
setuptools conda-forge/noarch::setuptools-72.1.0-pyhd8ed1ab_0
sqlite conda-forge/linux-aarch64::sqlite-3.46.0-hdc7ab3c_0
tk conda-forge/linux-aarch64::tk-8.6.13-h194ca79_0
wheel conda-forge/noarch::wheel-0.44.0-pyhd8ed1ab_0
xz conda-forge/linux-aarch64::xz-5.2.6-h9cdd2b7_0
zlib conda-forge/linux-aarch64::zlib-1.2.13-h68df207_6
Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
Channels:
- bioconda
- conda-forge
Platform: linux-aarch64
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done
==> WARNING: A newer version of conda exists. <==
current version: 24.3.0
latest version: 24.7.1
Please update conda by running
$ conda update -n base -c conda-forge conda
# All requested packages already installed.
Channels:
- bioconda
- conda-forge
Platform: linux-aarch64
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... failed
LibMambaUnsatisfiableError: Encountered problems while solving:
- nothing provides requested umap-learn 0.4.6**
- nothing provides requested stdlib-list 0.6.0**
- nothing provides requested seaborn 0.11.0**
- nothing provides requested anndata 0.7.4**
- nothing provides requested _libgcc_mutex 0.1**
- package pandas-1.1.2-py36hb2ee36f_0 requires setuptools <60.0.0, but none of the providers can be installed
- nothing provides umap-learn >=0.3.10,<0.5 needed by scanpy-1.6.0-py_1
- nothing provides _python_rc needed by python-3.12.0rc3-rc3_h43d1f9e_1_cpython
Could not solve for environment specs
The following packages are incompatible
├─ _libgcc_mutex 0.1** does not exist (perhaps a typo or a missing channel);
├─ anndata 0.7.4** does not exist (perhaps a typo or a missing channel);
├─ h5py 2.10.0** is installable with the potential options
│ ├─ h5py [2.10.0|3.1.0] would require
│ │ └─ python_abi 3.6.* *_cp36m, which can be installed;
│ ├─ h5py [2.10.0|3.1.0|3.2.1|3.3.0] would require
│ │ └─ python_abi 3.7.* *_cp37m, which can be installed;
│ ├─ h5py [2.10.0|3.1.0|3.2.1|3.3.0] would require
│ │ └─ python_abi 3.9.* *_cp39, which can be installed;
│ ├─ h5py 2.10.0 would require
│ │ └─ hdf5 >=1.10.6,<1.10.7.0a0 mpi_openmpi_* with the potential options
│ │ ├─ hdf5 [1.10.5|1.10.6] would require
│ │ │ └─ libgfortran4 >=7.5.0 with the potential options
│ │ │ ├─ libgfortran4 7.5.0 would require
│ │ │ │ └─ libgfortran-ng 7.5.0 *_17, which can be installed;
│ │ │ ├─ libgfortran4 7.5.0 would require
│ │ │ │ └─ libgfortran-ng 7.5.0 *_18, which can be installed;
│ │ │ └─ libgfortran4 7.5.0 would require
│ │ │ └─ libgfortran-ng 7.5.0 *_20, which can be installed;
│ │ ├─ hdf5 [1.10.5|1.10.6] would require
│ │ │ └─ libgfortran-ng >=7,<8.0a0 , which can be installed;
│ │ └─ hdf5 1.10.6, which can be installed;
│ ├─ h5py 2.10.0, which can be installed;
│ ├─ h5py 2.10.0 would require
│ │ └─ hdf5 >=1.10.6,<1.10.7.0a0 mpi_mpich_* with the potential options
│ │ ├─ hdf5 [1.10.5|1.10.6], which can be installed (as previously explained);
│ │ ├─ hdf5 [1.10.5|1.10.6], which can be installed (as previously explained);
│ │ └─ hdf5 1.10.6 conflicts with any installable versions previously reported;
│ ├─ h5py 2.10.0 would require
│ │ └─ hdf5 >=1.10.5,<1.10.6.0a0 mpi_mpich_* with the potential options
│ │ ├─ hdf5 1.10.5 conflicts with any installable versions previously reported;
│ │ ├─ hdf5 [1.10.5|1.10.6], which can be installed (as previously explained);
│ │ └─ hdf5 [1.10.5|1.10.6], which can be installed (as previously explained);
│ ├─ h5py 2.10.0 would require
│ │ └─ hdf5 >=1.10.5,<1.10.6.0a0 mpi_openmpi_* with the potential options
│ │ ├─ hdf5 [1.10.5|1.10.6], which can be installed (as previously explained);
│ │ ├─ hdf5 [1.10.5|1.10.6], which can be installed (as previously explained);
│ │ └─ hdf5 1.10.5 conflicts with any installable versions previously reported;
│ └─ h5py 2.10.0 would require
│ └─ hdf5 >=1.10.5,<1.10.6.0a0 with the potential options
│ ├─ hdf5 1.10.5 conflicts with any installable versions previously reported;
│ ├─ hdf5 [1.10.5|1.10.6], which can be installed (as previously explained);
│ ├─ hdf5 [1.10.5|1.10.6], which can be installed (as previously explained);
│ ├─ hdf5 1.10.5 conflicts with any installable versions previously reported;
│ └─ hdf5 1.10.5 conflicts with any installable versions previously reported;
├─ hdf5 1.10.6** is installable with the potential options
│ ├─ hdf5 [1.10.5|1.10.6], which can be installed (as previously explained);
│ ├─ hdf5 [1.10.5|1.10.6], which can be installed (as previously explained);
│ ├─ hdf5 1.10.6, which can be installed;
│ ├─ hdf5 1.10.6 conflicts with any installable versions previously reported;
│ └─ hdf5 1.10.6 conflicts with any installable versions previously reported;
├─ joblib 0.16.0** is requested and can be installed;
├─ krb5 1.17.2** is requested and can be installed;
├─ libgfortran-ng 13.2.0** is not installable because it requires
│ └─ libgfortran5 [13.2.0 h2af0866_10|13.2.0 h2af0866_11|...|13.2.0 h87d9d71_7] but there are no viable options
│ ├─ libgfortran5 13.2.0 would require
│ │ └─ libgfortran-ng 13.2.0 , which conflicts with any installable versions previously reported;
│ ├─ libgfortran5 13.2.0 would require
│ │ └─ libgfortran-ng 13.2.0 , which conflicts with any installable versions previously reported;
│ ├─ libgfortran5 13.2.0 would require
│ │ └─ libgfortran-ng 13.2.0 , which conflicts with any installable versions previously reported;
│ ├─ libgfortran5 13.2.0 would require
│ │ └─ libgfortran-ng 13.2.0 , which conflicts with any installable versions previously reported;
│ ├─ libgfortran5 13.2.0 would require
│ │ └─ libgfortran-ng 13.2.0 , which conflicts with any installable versions previously reported;
│ ├─ libgfortran5 13.2.0 would require
│ │ └─ libgfortran-ng 13.2.0 , which conflicts with any installable versions previously reported;
│ ├─ libgfortran5 13.2.0 would require
│ │ └─ libgfortran-ng 13.2.0 , which conflicts with any installable versions previously reported;
│ ├─ libgfortran5 13.2.0 would require
│ │ └─ libgfortran-ng 13.2.0 , which conflicts with any installable versions previously reported;
│ ├─ libgfortran5 13.2.0 would require
│ │ └─ libgfortran-ng 13.2.0 , which conflicts with any installable versions previously reported;
│ ├─ libgfortran5 13.2.0 would require
│ │ └─ libgfortran-ng 13.2.0 , which conflicts with any installable versions previously reported;
│ ├─ libgfortran5 13.2.0 would require
│ │ └─ libgfortran-ng 13.2.0 , which conflicts with any installable versions previously reported;
│ ├─ libgfortran5 13.2.0 would require
│ │ └─ libgfortran-ng 13.2.0 , which conflicts with any installable versions previously reported;
│ ├─ libgfortran5 13.2.0 would require
│ │ └─ libgfortran-ng 13.2.0 , which conflicts with any installable versions previously reported;
│ └─ libgfortran5 13.2.0 would require
│ └─ libgfortran-ng 13.2.0 , which conflicts with any installable versions previously reported;
├─ libgfortran5 13.2.0** , which cannot be installed (as previously explained);
├─ libopenblas 0.3.24** is installable and it requires
│ └─ libgfortran-ng with the potential options
│ ├─ libgfortran-ng [7.3.0|7.5.0], which can be installed;
│ ├─ libgfortran-ng 13.2.0, which cannot be installed (as previously explained);
│ └─ libgfortran-ng [10.3.0|10.4.0|...|9.5.0], which can be installed;
├─ libsqlite 3.43.2** is requested and can be installed;
├─ matplotlib-base 3.3.1** is installable with the potential options
│ ├─ matplotlib-base [3.3.1|3.4.1|...|3.5.3] would require
│ │ └─ python_abi 3.7.* *_cp37m, which can be installed;
│ ├─ matplotlib-base 3.3.1, which can be installed;
│ ├─ matplotlib-base 3.3.1 would require
│ │ └─ python_abi 3.6.* *_cp36m, which can be installed;
│ └─ matplotlib-base 3.3.1 would require
│ └─ python_abi 3.6 *_pypy36_pp73, which can be installed;
├─ numpy 1.19.1** is installable with the potential options
│ ├─ numpy [1.19.1|1.19.5] would require
│ │ └─ python_abi 3.6.* *_cp36m, which can be installed;
│ ├─ numpy [1.19.1|1.19.5|...|1.21.6] would require
│ │ └─ python_abi 3.7.* *_cp37m, which can be installed;
│ └─ numpy 1.19.1, which can be installed;
├─ packaging 20.4** is requested and can be installed;
├─ pandas 1.1.2** is installable and it requires
│ └─ setuptools <60.0.0 , which can be installed;
├─ pytables 3.6.1** is installable with the potential options
│ ├─ pytables 3.6.1 would require
│ │ └─ hdf5 >=1.10.6,<1.10.7.0a0 with the potential options
│ │ ├─ hdf5 [1.10.5|1.10.6], which can be installed (as previously explained);
│ │ ├─ hdf5 [1.10.5|1.10.6], which can be installed (as previously explained);
│ │ ├─ hdf5 1.10.6, which can be installed;
│ │ ├─ hdf5 1.10.6 conflicts with any installable versions previously reported;
│ │ └─ hdf5 1.10.6 conflicts with any installable versions previously reported;
│ ├─ pytables 3.6.1 would require
│ │ └─ hdf5 >=1.12.1,<1.12.2.0a0 with the potential options
│ │ ├─ hdf5 1.12.1 would require
│ │ │ └─ libcurl >=7.77.0,<9.0a0 with the potential options
│ │ │ ├─ libcurl [7.77.0|7.78.0] would require
│ │ │ │ └─ krb5 >=1.19.1,<1.20.0a0 , which conflicts with any installable versions previously reported;
│ │ │ ├─ libcurl [7.79.1|7.80.0|7.81.0|7.82.0] would require
│ │ │ │ └─ krb5 >=1.19.2,<1.20.0a0 , which conflicts with any installable versions previously reported;
│ │ │ ├─ libcurl [7.83.0|7.83.1|7.85.0|7.86.0] would require
│ │ │ │ └─ krb5 >=1.19.3,<1.20.0a0 , which conflicts with any installable versions previously reported;
│ │ │ ├─ libcurl [7.86.0|7.87.0|...|8.1.2] would require
│ │ │ │ └─ krb5 >=1.20.1,<1.21.0a0 , which conflicts with any installable versions previously reported;
│ │ │ ├─ libcurl [8.1.2|8.2.0|8.2.1] would require
│ │ │ │ └─ krb5 >=1.21.1,<1.22.0a0 , which conflicts with any installable versions previously reported;
│ │ │ ├─ libcurl [8.3.0|8.4.0|8.5.0|8.6.0|8.7.1] would require
│ │ │ │ └─ krb5 >=1.21.2,<1.22.0a0 , which conflicts with any installable versions previously reported;
│ │ │ └─ libcurl [8.8.0|8.9.0|8.9.1] would require
│ │ │ └─ zstd >=1.5.6,<1.6.0a0 , which can be installed;
│ │ └─ hdf5 1.12.1 would require
│ │ └─ libcurl [>=7.79.1,<9.0a0 |>=7.80.0,<9.0a0 |>=7.81.0,<9.0a0 ] with the potential options
│ │ ├─ libcurl [7.79.1|7.80.0|7.81.0|7.82.0], which cannot be installed (as previously explained);
│ │ ├─ libcurl [7.83.0|7.83.1|7.85.0|7.86.0], which cannot be installed (as previously explained);
│ │ ├─ libcurl [7.86.0|7.87.0|...|8.1.2], which cannot be installed (as previously explained);
│ │ ├─ libcurl [8.1.2|8.2.0|8.2.1], which cannot be installed (as previously explained);
│ │ ├─ libcurl [8.3.0|8.4.0|8.5.0|8.6.0|8.7.1], which cannot be installed (as previously explained);
│ │ └─ libcurl [8.8.0|8.9.0|8.9.1], which can be installed (as previously explained);
│ ├─ pytables 3.6.1 would require
│ │ └─ python_abi 3.6.* *_cp36m, which can be installed;
│ ├─ pytables 3.6.1 would require
│ │ └─ python_abi 3.7 *_pypy37_pp73, which can be installed;
│ ├─ pytables 3.6.1 would require
│ │ └─ python_abi 3.7.* *_cp37m, which can be installed;
│ └─ pytables 3.6.1 would require
│ └─ python_abi 3.9.* *_cp39, which can be installed;
├─ python_abi 3.8** is not installable because it conflicts with any installable versions previously reported;
├─ scanpy 1.6.0** is installable with the potential options
│ ├─ scanpy 1.6.0 would require
│ │ ├─ anndata >=0.7 with the potential options
│ │ │ ├─ anndata [0.8.0|0.9.0|0.9.1|0.9.2] would require
│ │ │ │ └─ h5py >=3.0 with the potential options
│ │ │ │ ├─ h5py [2.10.0|3.1.0], which can be installed (as previously explained);
│ │ │ │ ├─ h5py [2.10.0|3.1.0|3.2.1|3.3.0], which can be installed (as previously explained);
│ │ │ │ ├─ h5py [3.1.0|3.2.1|3.3.0] would require
│ │ │ │ │ └─ hdf5 >=1.10.6,<1.10.7.0a0 mpi_mpich_* with the potential options
│ │ │ │ │ ├─ hdf5 [1.10.5|1.10.6], which can be installed (as previously explained);
│ │ │ │ │ ├─ hdf5 [1.10.5|1.10.6], which can be installed (as previously explained);
│ │ │ │ │ └─ hdf5 1.10.6 conflicts with any installable versions previously reported;
│ │ │ │ ├─ h5py [2.10.0|3.1.0|3.2.1|3.3.0], which can be installed (as previously explained);
│ │ │ │ ├─ h5py [3.1.0|3.2.1|3.3.0] would require
│ │ │ │ │ └─ hdf5 >=1.10.6,<1.10.7.0a0 mpi_openmpi_* with the potential options
│ │ │ │ │ ├─ hdf5 [1.10.5|1.10.6], which can be installed (as previously explained);
│ │ │ │ │ ├─ hdf5 [1.10.5|1.10.6], which can be installed (as previously explained);
│ │ │ │ │ └─ hdf5 1.10.6, which can be installed;
│ │ │ │ ├─ h5py [3.1.0|3.2.1|3.3.0] conflicts with any installable versions previously reported;
│ │ │ │ ├─ h5py [3.3.0|3.4.0|3.6.0] would require
│ │ │ │ │ └─ hdf5 [>=1.12.1,<1.12.2.0a0 |>=1.12.1,<1.12.2.0a0 mpi_mpich_*|>=1.12.1,<1.12.2.0a0 mpi_openmpi_*], which can be installed (as previously explained);
│ │ │ │ ├─ h5py [3.7.0|3.8.0] would require
│ │ │ │ │ └─ hdf5 [>=1.12.2,<1.12.3.0a0 |>=1.12.2,<1.12.3.0a0 mpi_mpich_*|>=1.12.2,<1.12.3.0a0 mpi_openmpi_*] with the potential options
│ │ │ │ │ ├─ hdf5 1.12.2 would require
│ │ │ │ │ │ └─ libcurl >=7.83.1,<9.0a0 with the potential options
│ │ │ │ │ │ ├─ libcurl [7.83.0|7.83.1|7.85.0|7.86.0], which cannot be installed (as previously explained);
│ │ │ │ │ │ ├─ libcurl [7.86.0|7.87.0|...|8.1.2], which cannot be installed (as previously explained);
│ │ │ │ │ │ ├─ libcurl [8.1.2|8.2.0|8.2.1], which cannot be installed (as previously explained);
│ │ │ │ │ │ ├─ libcurl [8.3.0|8.4.0|8.5.0|8.6.0|8.7.1], which cannot be installed (as previously explained);
│ │ │ │ │ │ └─ libcurl [8.8.0|8.9.0|8.9.1], which can be installed (as previously explained);
│ │ │ │ │ └─ hdf5 [1.12.2|1.14.0|1.14.1] would require
│ │ │ │ │ └─ libcurl [>=7.87.0,<9.0a0 |>=7.88.1,<9.0a0 |>=8.1.2,<9.0a0 ] with the potential options
│ │ │ │ │ ├─ libcurl [7.86.0|7.87.0|...|8.1.2], which cannot be installed (as previously explained);
│ │ │ │ │ ├─ libcurl [8.1.2|8.2.0|8.2.1], which cannot be installed (as previously explained);
│ │ │ │ │ ├─ libcurl [8.3.0|8.4.0|8.5.0|8.6.0|8.7.1], which cannot be installed (as previously explained);
│ │ │ │ │ └─ libcurl [8.8.0|8.9.0|8.9.1], which can be installed (as previously explained);
│ │ │ │ ├─ h5py [3.10.0|3.11.0] would require
│ │ │ │ │ └─ hdf5 [>=1.14.3,<1.14.4.0a0 |>=1.14.3,<1.14.4.0a0 mpi_mpich_*|>=1.14.3,<1.14.4.0a0 mpi_openmpi_*] with the potential options
│ │ │ │ │ ├─ hdf5 1.14.3 would require
│ │ │ │ │ │ └─ libcurl >=8.8.0,<9.0a0 , which can be installed (as previously explained);
│ │ │ │ │ └─ hdf5 1.14.3 would require
│ │ │ │ │ └─ libcurl [>=8.4.0,<9.0a0 |>=8.7.1,<9.0a0 ] with the potential options
│ │ │ │ │ ├─ libcurl [8.3.0|8.4.0|8.5.0|8.6.0|8.7.1], which cannot be installed (as previously explained);
│ │ │ │ │ └─ libcurl [8.8.0|8.9.0|8.9.1], which can be installed (as previously explained);
│ │ │ │ ├─ h5py [3.10.0|3.9.0] would require
│ │ │ │ │ └─ hdf5 [>=1.14.2,<1.14.4.0a0 |>=1.14.2,<1.14.4.0a0 mpi_mpich_*|>=1.14.2,<1.14.4.0a0 mpi_openmpi_*] with the potential options
│ │ │ │ │ ├─ hdf5 1.14.2 would require
│ │ │ │ │ │ └─ libcurl >=8.2.1,<9.0a0 with the potential options
│ │ │ │ │ │ ├─ libcurl [8.1.2|8.2.0|8.2.1], which cannot be installed (as previously explained);
│ │ │ │ │ │ ├─ libcurl [8.3.0|8.4.0|8.5.0|8.6.0|8.7.1], which cannot be installed (as previously explained);
│ │ │ │ │ │ └─ libcurl [8.8.0|8.9.0|8.9.1], which can be installed (as previously explained);
│ │ │ │ │ ├─ hdf5 1.14.3, which can be installed (as previously explained);
│ │ │ │ │ └─ hdf5 1.14.3, which can be installed (as previously explained);
│ │ │ │ └─ h5py [3.8.0|3.9.0] would require
│ │ │ │ └─ hdf5 [>=1.14.0,<1.14.1.0a0 |>=1.14.0,<1.14.1.0a0 mpi_mpich_*|...|>=1.14.1,<1.14.2.0a0 mpi_openmpi_*], which can be installed (as previously explained);
│ │ │ ├─ anndata [0.10.0|0.10.1|...|0.10.5.post1] would require
│ │ │ │ └─ python >=3.9 with the potential options
│ │ │ │ ├─ python [3.10.0|3.10.1|...|3.10.9] would require
│ │ │ │ │ └─ python_abi 3.10.* *_cp310, which can be installed;
│ │ │ │ ├─ python [3.11.0|3.11.1|...|3.11.6] would require
│ │ │ │ │ └─ python_abi 3.11.* *_cp311, which can be installed;
│ │ │ │ ├─ python [3.9.0|3.9.1|...|3.9.9] would require
│ │ │ │ │ └─ python_abi 3.9.* *_cp39, which can be installed;
│ │ │ │ ├─ python [3.9.10|3.9.12|3.9.16|3.9.18] would require
│ │ │ │ │ └─ python_abi 3.9 *_pypy39_pp73, which can be installed;
│ │ │ │ ├─ python [3.10.13|3.11.7|3.12.1|3.9.18] would require
│ │ │ │ │ ├─ libsqlite >=3.44.2,<4.0a0 , which conflicts with any installable versions previously reported;
│ │ │ │ │ └─ pypy3.9 7.3.15.* but there are no viable options
│ │ │ │ │ ├─ pypy3.9 7.3.15 would require
│ │ │ │ │ │ └─ libsqlite >=3.44.2,<4.0a0 , which conflicts with any installable versions previously reported;
│ │ │ │ │ └─ pypy3.9 7.3.15 would require
│ │ │ │ │ └─ libsqlite >=3.45.1,<4.0a0 , which conflicts with any installable versions previously reported;
│ │ │ │ ├─ python [3.10.14|3.12.3|3.9.19] would require
│ │ │ │ │ └─ libsqlite >=3.45.2,<4.0a0 , which conflicts with any installable versions previously reported;
│ │ │ │ ├─ python [3.11.8|3.12.2] would require
│ │ │ │ │ └─ libsqlite >=3.45.1,<4.0a0 , which conflicts with any installable versions previously reported;
│ │ │ │ ├─ python 3.11.9 would require
│ │ │ │ │ └─ libsqlite >=3.45.3,<4.0a0 , which conflicts with any installable versions previously reported;
│ │ │ │ ├─ python 3.12.0 would require
│ │ │ │ │ └─ python_abi 3.12.* *_cp312, which can be installed;
│ │ │ │ ├─ python 3.12.0rc3 would require
│ │ │ │ │ └─ _python_rc, which does not exist (perhaps a missing channel);
│ │ │ │ └─ python 3.12.4 would require
│ │ │ │ └─ libsqlite >=3.46.0,<4.0a0 , which conflicts with any installable versions previously reported;
│ │ │ └─ anndata [0.10.6|0.10.7|0.10.8] would require
│ │ │ ├─ python >=3.9 with the potential options
│ │ │ │ ├─ python [3.10.0|3.10.1|...|3.10.9], which can be installed (as previously explained);
│ │ │ │ ├─ python [3.11.0|3.11.1|...|3.11.6], which can be installed (as previously explained);
│ │ │ │ ├─ python [3.9.0|3.9.1|...|3.9.9], which can be installed (as previously explained);
│ │ │ │ ├─ python [3.9.10|3.9.12|3.9.16|3.9.18], which can be installed (as previously explained);
│ │ │ │ ├─ python [3.10.13|3.11.7|3.12.1|3.9.18], which cannot be installed (as previously explained);
│ │ │ │ ├─ python [3.10.14|3.12.3|3.9.19], which cannot be installed (as previously explained);
│ │ │ │ ├─ python [3.11.8|3.12.2], which cannot be installed (as previously explained);
│ │ │ │ ├─ python 3.11.9, which cannot be installed (as previously explained);
│ │ │ │ ├─ python 3.12.0, which can be installed (as previously explained);
│ │ │ │ ├─ python 3.12.0rc3, which cannot be installed (as previously explained);
│ │ │ │ └─ python 3.12.4, which cannot be installed (as previously explained);
│ │ │ └─ scipy >=1.8 with the potential options
│ │ │ ├─ scipy [1.10.0|1.10.1|...|1.9.3], which can be installed;
│ │ │ └─ scipy [1.10.0|1.10.1|1.8.1] would require
│ │ │ └─ python_abi 3.8 *_pypy38_pp73, which conflicts with any installable versions previously reported;
│ │ └─ seaborn, which can be installed;
│ └─ scanpy [1.6.0|1.6.1] would require
│ └─ umap-learn >=0.3.10,<0.5 , which does not exist (perhaps a missing channel);
├─ scikit-learn 0.23.2** is installable with the potential options
│ ├─ scikit-learn 0.23.2 would require
│ │ └─ python_abi 3.6 *_pypy36_pp73, which can be installed;
│ ├─ scikit-learn 0.23.2 would require
│ │ └─ python_abi 3.6.* *_cp36m, which can be installed;
│ ├─ scikit-learn 0.23.2 would require
│ │ └─ python_abi 3.7.* *_cp37m, which can be installed;
│ ├─ scikit-learn 0.23.2 would require
│ │ └─ python_abi 3.8.* *_cp38, which conflicts with any installable versions previously reported;
│ └─ scikit-learn 0.23.2 would require
│ └─ python_abi 3.9.* *_cp39, which can be installed;
├─ scipy 1.5.2** is not installable because there are no viable options
│ ├─ scipy 1.5.2 would require
│ │ └─ python_abi 3.6.* *_cp36m, which can be installed;
│ ├─ scipy 1.5.2 would require
│ │ └─ python_abi 3.6 *_pypy36_pp73, which can be installed;
│ ├─ scipy 1.5.2 would require
│ │ └─ python_abi 3.7.* *_cp37m, which can be installed;
│ ├─ scipy 1.5.2 would require
│ │ ├─ libgfortran4 >=7.5.0 , which can be installed (as previously explained);
│ │ └─ python_abi 3.8.* *_cp38, which conflicts with any installable versions previously reported;
│ ├─ scipy 1.5.2 would require
│ │ └─ python_abi 3.8.* *_cp38, which conflicts with any installable versions previously reported;
│ ├─ scipy 1.5.2 would require
│ │ ├─ libgfortran-ng with the potential options
│ │ │ ├─ libgfortran-ng [7.3.0|7.5.0], which can be installed;
│ │ │ ├─ libgfortran-ng 13.2.0, which cannot be installed (as previously explained);
│ │ │ └─ libgfortran-ng [10.3.0|10.4.0|...|9.5.0], which can be installed;
│ │ └─ python_abi 3.8.* *_cp38, which conflicts with any installable versions previously reported;
│ └─ scipy 1.5.2 would require
│ └─ python_abi 3.9.* *_cp39, which can be installed;
├─ scvelo 0.2.2** is installable with the potential options
│ ├─ scvelo 0.2.2 would require
│ │ └─ scanpy >=1.4 with the potential options
│ │ ├─ scanpy 1.6.0, which can be installed (as previously explained);
│ │ ├─ scanpy [1.6.0|1.6.1], which cannot be installed (as previously explained);
│ │ ├─ scanpy [1.4|1.4.1|...|1.4.4.post1] would require
│ │ │ └─ louvain, which does not exist (perhaps a missing channel);
│ │ ├─ scanpy 1.4.4.post1 would require
│ │ │ └─ matplotlib 3.0.* , which does not exist (perhaps a missing channel);
│ │ ├─ scanpy [1.4.6|1.5.0|...|1.8.2] would require
│ │ │ └─ anndata [>=0.7 |>=0.7.4 ], which can be installed (as previously explained);
│ │ ├─ scanpy [1.9.1|1.9.2|1.9.3] would require
│ │ │ └─ matplotlib-base >=3.4 with the potential options
│ │ │ ├─ matplotlib-base [3.4.1|3.4.2|...|3.5.2] would require
│ │ │ │ └─ python_abi 3.7 *_pypy37_pp73, which can be installed;
│ │ │ ├─ matplotlib-base [3.3.1|3.4.1|...|3.5.3], which can be installed (as previously explained);
│ │ │ ├─ matplotlib-base [3.4.1|3.4.2|3.4.3|3.5.0|3.5.1] conflicts with any installable versions previously reported;
│ │ │ ├─ matplotlib-base [3.4.1|3.4.2|...|3.9.1] would require
│ │ │ │ └─ python_abi 3.9.* *_cp39, which can be installed;
│ │ │ ├─ matplotlib-base [3.4.3|3.5.0|...|3.9.1] would require
│ │ │ │ └─ python_abi 3.10.* *_cp310, which can be installed;
│ │ │ ├─ matplotlib-base [3.5.2|3.5.3|...|3.7.2] would require
│ │ │ │ └─ python_abi 3.8 *_pypy38_pp73, which conflicts with any installable versions previously reported;
│ │ │ ├─ matplotlib-base [3.5.2|3.5.3] would require
│ │ │ │ └─ numpy >=1.19.5,<2.0a0 with the potential options
│ │ │ │ ├─ numpy 1.19.5 would require
│ │ │ │ │ └─ python_abi 3.6 *_pypy36_pp73, which can be installed;
│ │ │ │ ├─ numpy [1.19.1|1.19.5], which can be installed (as previously explained);
│ │ │ │ ├─ numpy [1.19.5|1.20.0|...|1.21.5] would require
│ │ │ │ │ └─ python_abi 3.7 *_pypy37_pp73, which can be installed;
│ │ │ │ ├─ numpy [1.19.1|1.19.5|...|1.21.6], which can be installed (as previously explained);
│ │ │ │ ├─ numpy [1.19.5|1.20.0|1.20.1|1.20.2] conflicts with any installable versions previously reported;
│ │ │ │ ├─ numpy [1.19.5|1.20.3|...|1.24.4] would require
│ │ │ │ │ └─ python_abi 3.8 *_pypy38_pp73, which conflicts with any installable versions previously reported;
│ │ │ │ ├─ numpy [1.19.5|1.20.0|...|1.26.4] would require
│ │ │ │ │ └─ python_abi 3.9.* *_cp39, which can be installed;
│ │ │ │ ├─ numpy [1.19.5|1.20.3|...|1.26.3] would require
│ │ │ │ │ └─ python_abi 3.9 *_pypy39_pp73, which can be installed;
│ │ │ │ ├─ numpy [1.20.3|1.21.0|...|1.21.5] conflicts with any installable versions previously reported;
│ │ │ │ ├─ numpy [1.21.3|1.21.4|...|1.26.4] would require
│ │ │ │ │ └─ python_abi 3.10.* *_cp310, which can be installed;
│ │ │ │ ├─ numpy [1.21.6|1.22.0|1.22.1|1.22.2|1.22.3] conflicts with any installable versions previously reported;
│ │ │ │ ├─ numpy [1.22.4|1.23.0|...|1.24.4] conflicts with any installable versions previously reported;
│ │ │ │ ├─ numpy [1.23.4|1.23.5|...|1.26.4] would require
│ │ │ │ │ └─ python_abi 3.11.* *_cp311, which can be installed;
│ │ │ │ ├─ numpy [1.26.0|1.26.2|1.26.3|1.26.4] would require
│ │ │ │ │ └─ python_abi 3.12.* *_cp312, which can be installed;
│ │ │ │ └─ numpy 1.26.4 would require
│ │ │ │ └─ pypy3.9 >=7.3.15 but there are no viable options
│ │ │ │ ├─ pypy3.9 7.3.15, which cannot be installed (as previously explained);
│ │ │ │ ├─ pypy3.9 7.3.15, which cannot be installed (as previously explained);
│ │ │ │ └─ pypy3.9 7.3.16 would require
│ │ │ │ └─ libsqlite >=3.45.3,<4.0a0 , which conflicts with any installable versions previously reported;
│ │ │ ├─ matplotlib-base [3.5.2|3.5.3|...|3.8.2] would require
│ │ │ │ └─ python_abi 3.9 *_pypy39_pp73, which can be installed;
│ │ │ ├─ matplotlib-base [3.6.0|3.6.1|...|3.7.1] would require
│ │ │ │ └─ numpy >=1.20.3,<2.0a0 with the potential options
│ │ │ │ ├─ numpy [1.19.5|1.20.0|...|1.21.5], which can be installed (as previously explained);
│ │ │ │ ├─ numpy [1.19.1|1.19.5|...|1.21.6], which can be installed (as previously explained);
│ │ │ │ ├─ numpy [1.19.5|1.20.3|...|1.24.4], which cannot be installed (as previously explained);
│ │ │ │ ├─ numpy [1.19.5|1.20.0|...|1.26.4], which can be installed (as previously explained);
│ │ │ │ ├─ numpy [1.19.5|1.20.3|...|1.26.3], which can be installed (as previously explained);
│ │ │ │ ├─ numpy [1.20.3|1.21.0|...|1.21.5] conflicts with any installable versions previously reported;
│ │ │ │ ├─ numpy [1.21.3|1.21.4|...|1.26.4], which can be installed (as previously explained);
│ │ │ │ ├─ numpy [1.21.6|1.22.0|1.22.1|1.22.2|1.22.3] conflicts with any installable versions previously reported;
│ │ │ │ ├─ numpy [1.22.4|1.23.0|...|1.24.4] conflicts with any installable versions previously reported;
│ │ │ │ ├─ numpy [1.23.4|1.23.5|...|1.26.4], which can be installed (as previously explained);
│ │ │ │ ├─ numpy [1.26.0|1.26.2|1.26.3|1.26.4], which can be installed (as previously explained);
│ │ │ │ └─ numpy 1.26.4, which cannot be installed (as previously explained);
│ │ │ ├─ matplotlib-base [3.6.1|3.6.2|...|3.9.1] would require
│ │ │ │ └─ python_abi 3.11.* *_cp311, which can be installed;
│ │ │ ├─ matplotlib-base 3.7.2 would require
│ │ │ │ └─ numpy >=1.21.6,<2.0a0 with the potential options
│ │ │ │ ├─ numpy [1.19.1|1.19.5|...|1.21.6], which can be installed (as previously explained);
│ │ │ │ ├─ numpy [1.19.5|1.20.3|...|1.24.4], which cannot be installed (as previously explained);
│ │ │ │ ├─ numpy [1.19.5|1.20.0|...|1.26.4], which can be installed (as previously explained);
│ │ │ │ ├─ numpy [1.19.5|1.20.3|...|1.26.3], which can be installed (as previously explained);
│ │ │ │ ├─ numpy [1.21.3|1.21.4|...|1.26.4], which can be installed (as previously explained);
│ │ │ │ ├─ numpy [1.21.6|1.22.0|1.22.1|1.22.2|1.22.3] conflicts with any installable versions previously reported;
│ │ │ │ ├─ numpy [1.22.4|1.23.0|...|1.24.4] conflicts with any installable versions previously reported;
│ │ │ │ ├─ numpy [1.23.4|1.23.5|...|1.26.4], which can be installed (as previously explained);
│ │ │ │ ├─ numpy [1.26.0|1.26.2|1.26.3|1.26.4], which can be installed (as previously explained);
│ │ │ │ └─ numpy 1.26.4, which cannot be installed (as previously explained);
│ │ │ ├─ matplotlib-base 3.7.3 would require
│ │ │ │ └─ numpy >=1.22.4,<2.0a0 with the potential options
│ │ │ │ ├─ numpy [1.19.5|1.20.3|...|1.24.4], which cannot be installed (as previously explained);
│ │ │ │ ├─ numpy [1.19.5|1.20.0|...|1.26.4], which can be installed (as previously explained);
│ │ │ │ ├─ numpy [1.19.5|1.20.3|...|1.26.3], which can be installed (as previously explained);
│ │ │ │ ├─ numpy [1.21.3|1.21.4|...|1.26.4], which can be installed (as previously explained);
│ │ │ │ ├─ numpy [1.22.4|1.23.0|...|1.24.4] conflicts with any installable versions previously reported;
│ │ │ │ ├─ numpy [1.23.4|1.23.5|...|1.26.4], which can be installed (as previously explained);
│ │ │ │ ├─ numpy [1.26.0|1.26.2|1.26.3|1.26.4], which can be installed (as previously explained);
│ │ │ │ └─ numpy 1.26.4, which cannot be installed (as previously explained);
│ │ │ ├─ matplotlib-base [3.8.0|3.8.1|...|3.9.1] would require
│ │ │ │ └─ python_abi 3.12.* *_cp312, which can be installed;
│ │ │ └─ matplotlib-base [3.8.3|3.8.4|3.9.1] would require
│ │ │ └─ pypy3.9 >=7.3.15 , which cannot be installed (as previously explained);
│ │ ├─ scanpy [1.10.0|1.10.1|1.10.2] would require
│ │ │ └─ packaging >=21.3 , which conflicts with any installable versions previously reported;
│ │ └─ scanpy [1.9.4|1.9.5|1.9.6|1.9.7|1.9.8] would require
│ │ └─ scikit-learn >=0.24 with the potential options
│ │ ├─ scikit-learn [0.24.0|0.24.1|...|1.0.2] conflicts with any installable versions previously reported;
│ │ ├─ scikit-learn [1.1.0|1.1.1|1.1.2|1.1.3] would require
│ │ │ └─ joblib >=1.0.0 , which conflicts with any installable versions previously reported;
│ │ ├─ scikit-learn [1.2.0|1.2.1|...|1.3.2] would require
│ │ │ └─ joblib >=1.1.1 , which conflicts with any installable versions previously reported;
│ │ ├─ scikit-learn [1.4.0|1.4.1.post1|1.4.2] would require
│ │ │ └─ joblib >=1.2.0 , which conflicts with any installable versions previously reported;
│ │ └─ scikit-learn [1.5.0|1.5.1] would require
│ │ └─ threadpoolctl >=3.1.0 , which can be installed;
│ └─ scvelo 0.2.2 would require
│ └─ anndata >=0.7.0 , which can be installed (as previously explained);
├─ seaborn-base 0.11.0** is not installable because there are no viable options
│ ├─ seaborn-base 0.11.0 would require
│ │ └─ seaborn 0.11.0 *_0, which conflicts with any installable versions previously reported;
│ └─ seaborn-base 0.11.0 would require
│ └─ seaborn 0.11.0 *_1, which conflicts with any installable versions previously reported;
├─ seaborn 0.11.0** does not exist (perhaps a typo or a missing channel);
├─ setuptools 68.2.2** is not installable because it conflicts with any installable versions previously reported;
├─ stdlib-list 0.6.0** does not exist (perhaps a typo or a missing channel);
├─ threadpoolctl 2.1.0** is not installable because it conflicts with any installable versions previously reported;
├─ tornado 6.0.4** is installable with the potential options
│ ├─ tornado 6.0.4, which can be installed;
│ ├─ tornado 6.0.4 would require
│ │ └─ python_abi 3.6.* *_cp36m, which can be installed;
│ ├─ tornado 6.0.4 would require
│ │ └─ python_abi 3.6 *_pypy36_pp73, which can be installed;
│ ├─ tornado 6.0.4 would require
│ │ └─ python_abi 3.7.* *_cp37m, which can be installed;
│ ├─ tornado 6.0.4 would require
│ │ └─ python_abi 3.8.* *_cp38, which conflicts with any installable versions previously reported;
│ ├─ tornado 6.0.4 would require
│ │ └─ python_abi * *_cp38, which conflicts with any installable versions previously reported;
│ └─ tornado 6.0.4 would require
│ └─ python_abi 3.9.* *_cp39, which can be installed;
├─ umap-learn 0.4.6** does not exist (perhaps a typo or a missing channel);
└─ zstd 1.5.5** is not installable because it conflicts with any installable versions previously reported.
Quitting from lines 76-82 [unnamed-chunk-5] (velociraptor.Rmd)
Error: processing vignette 'velociraptor.Rmd' failed with diagnostics:
one or more Python packages failed to install [error code 1]
--- failed re-building ‘velociraptor.Rmd’
SUMMARY: processing the following file failed:
‘velociraptor.Rmd’
Error: Vignette re-building failed.
Execution halted