Multiple platform build/check report for BioC 3.20 - BUILD results for recount3 on kunpeng2

Hostname	OS	Arch (*)	R version	Installed pkgs
nebbiolo2	Linux (Ubuntu 22.04.3 LTS)	x86_64	4.4.1 (2024-06-14) -- "Race for Your Life"	4713
teran2	Linux (Ubuntu 24.04.1 LTS)	x86_64	4.4.1 (2024-06-14) -- "Race for Your Life"	4444
palomino8	Windows Server 2022 Datacenter	x64	4.4.1 (2024-06-14 ucrt) -- "Race for Your Life"	4450
lconway	macOS 12.7.1 Monterey	x86_64	4.4.1 (2024-06-14) -- "Race for Your Life"	4483
kjohnson3	macOS 13.6.5 Ventura	arm64	4.4.1 (2024-06-14) -- "Race for Your Life"	4430
kunpeng2	Linux (openEuler 22.03 LTS-SP1)	aarch64	4.4.1 (2024-06-14) -- "Race for Your Life"	4428
Click on any hostname to see more info about the system (e.g. compilers) () as reported by 'uname -p', except on Windows and Mac OS X*

BUILD results for recount3 on kunpeng2

To the developers/maintainers of the recount3 package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/recount3.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.
- See Martin Grigorov's blog post for how to debug Linux ARM64 related issues on a x86_64 host.

raw results

Summary

Package: recount3

Version: 1.15.0

Command: /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data recount3

StartedAt: 2024-09-12 00:48:10 -0000 (Thu, 12 Sep 2024)

EndedAt: 2024-09-12 00:51:23 -0000 (Thu, 12 Sep 2024)

EllapsedTime: 193.3 seconds

RetCode: 1

Status: ERROR

PackageFile: None

PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data recount3
###
##############################################################################
##############################################################################


* checking for file ‘recount3/DESCRIPTION’ ... OK
* preparing ‘recount3’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘recount3-quickstart.Rmd’ using rmarkdown
Could not fetch https://skyserver.sdss.org/dr14/en/images/sciserver_logo_inverted_vertical.png
HttpExceptionRequest Request {
  host                 = "skyserver.sdss.org"
  port                 = 443
  secure               = True
  requestHeaders       = []
  path                 = "/dr14/en/images/sciserver_logo_inverted_vertical.png"
  queryString          = ""
  method               = "GET"
  proxy                = Nothing
  rawBody              = False
  redirectCount        = 10
  responseTimeout      = ResponseTimeoutDefault
  requestVersion       = HTTP/1.1
  proxySecureMode      = ProxySecureWithConnect
}
 (ConnectionFailure Network.Socket.getAddrInfo (called with preferred socket type/protocol: AddrInfo {addrFlags = [AI_ADDRCONFIG], addrFamily = AF_UNSPEC, addrSocketType = Stream, addrProtocol = 0, addrAddress = 0.0.0.0:0, addrCanonName = Nothing}, host name: Just "skyserver.sdss.org", service name: Just "443"): does not exist (Try again))
Error: processing vignette 'recount3-quickstart.Rmd' failed with diagnostics:
pandoc document conversion failed with error 61
--- failed re-building ‘recount3-quickstart.Rmd’

SUMMARY: processing the following file failed:
  ‘recount3-quickstart.Rmd’

Error: Vignette re-building failed.
Execution halted