| Back to Multiple platform build/check report for BioC 3.20: simplified long |
|
This page was generated on 2024-09-12 11:50 -0400 (Thu, 12 Sep 2024).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 22.04.3 LTS) | x86_64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4713 |
| teran2 | Linux (Ubuntu 24.04.1 LTS) | x86_64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4444 |
| palomino8 | Windows Server 2022 Datacenter | x64 | 4.4.1 (2024-06-14 ucrt) -- "Race for Your Life" | 4450 |
| lconway | macOS 12.7.1 Monterey | x86_64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4483 |
| kjohnson3 | macOS 13.6.5 Ventura | arm64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4430 |
| kunpeng2 | Linux (openEuler 22.03 LTS-SP1) | aarch64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4428 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 1483/2258 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| pareg 1.9.0 (landing page) Kim Philipp Jablonski
| nebbiolo2 | Linux (Ubuntu 22.04.3 LTS) / x86_64 | OK | ERROR | skipped | |||||||||
| teran2 | Linux (Ubuntu 24.04.1 LTS) / x86_64 | OK | ERROR | skipped | ||||||||||
| palomino8 | Windows Server 2022 Datacenter / x64 | OK | ERROR | skipped | skipped | |||||||||
| lconway | macOS 12.7.1 Monterey / x86_64 | OK | ERROR | skipped | skipped | |||||||||
| kjohnson3 | macOS 13.6.5 Ventura / arm64 | OK | ERROR | skipped | skipped | |||||||||
| kunpeng2 | Linux (openEuler 22.03 LTS-SP1) / aarch64 | OK | ERROR | skipped | ||||||||||
|
To the developers/maintainers of the pareg package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/pareg.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. - See Martin Grigorov's blog post for how to debug Linux ARM64 related issues on a x86_64 host. |
| Package: pareg |
| Version: 1.9.0 |
| Command: /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data pareg |
| StartedAt: 2024-09-12 00:23:06 -0000 (Thu, 12 Sep 2024) |
| EndedAt: 2024-09-12 00:24:55 -0000 (Thu, 12 Sep 2024) |
| EllapsedTime: 108.2 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
##############################################################################
##############################################################################
###
### Running command:
###
### /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data pareg
###
##############################################################################
##############################################################################
* checking for file ‘pareg/DESCRIPTION’ ... OK
* preparing ‘pareg’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘pareg.Rmd’ using rmarkdown
Channels:
- anaconda
Platform: linux-aarch64
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done
## Package Plan ##
environment location: /home/biocbuild/.cache/R/basilisk/1.17.2/pareg/1.9.0/pareg
added / updated specs:
- python=3.10.14
The following NEW packages will be INSTALLED:
_libgcc_mutex anaconda/linux-aarch64::_libgcc_mutex-0.1-main
_openmp_mutex anaconda/linux-aarch64::_openmp_mutex-5.1-51_gnu
bzip2 anaconda/linux-aarch64::bzip2-1.0.8-h998d150_6
ca-certificates anaconda/linux-aarch64::ca-certificates-2024.7.2-hd43f75c_0
ld_impl_linux-aar~ anaconda/linux-aarch64::ld_impl_linux-aarch64-2.38-h8131f2d_1
libffi anaconda/linux-aarch64::libffi-3.4.4-h419075a_1
libgcc-ng anaconda/linux-aarch64::libgcc-ng-11.2.0-h1234567_1
libgomp anaconda/linux-aarch64::libgomp-11.2.0-h1234567_1
libstdcxx-ng anaconda/linux-aarch64::libstdcxx-ng-11.2.0-h1234567_1
libuuid anaconda/linux-aarch64::libuuid-1.41.5-h998d150_0
ncurses anaconda/linux-aarch64::ncurses-6.4-h419075a_0
openssl anaconda/linux-aarch64::openssl-3.0.15-h998d150_0
pip anaconda/linux-aarch64::pip-24.2-py310hd43f75c_0
python anaconda/linux-aarch64::python-3.10.14-h4bb2201_1
readline anaconda/linux-aarch64::readline-8.2-h998d150_0
setuptools anaconda/linux-aarch64::setuptools-72.1.0-py310hd43f75c_0
sqlite anaconda/linux-aarch64::sqlite-3.45.3-h998d150_0
tk anaconda/linux-aarch64::tk-8.6.14-h987d8db_0
tzdata anaconda/noarch::tzdata-2024a-h04d1e81_0
wheel anaconda/linux-aarch64::wheel-0.43.0-py310hd43f75c_0
xz anaconda/linux-aarch64::xz-5.4.6-h998d150_1
zlib anaconda/linux-aarch64::zlib-1.2.13-h998d150_1
Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
Channels:
- anaconda
Platform: linux-aarch64
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done
# All requested packages already installed.
Channels:
- anaconda
Platform: linux-aarch64
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... failed
LibMambaUnsatisfiableError: Encountered problems while solving:
- package tensorflow-base-2.10.0-eigen_py37ha372be2_0 requires python >=3.7,<3.8.0a0, but none of the providers can be installed
Could not solve for environment specs
The following packages are incompatible
├─ python 3.10.14** is installable and it requires
│ └─ openssl >=3.0.13,<4.0a0 , which can be installed;
└─ tensorflow 2.10.0** is not installable because there are no viable options
├─ tensorflow 2.10.0 would require
│ └─ tensorflow-base [2.10.0 eigen_py37ha372be2_0|2.10.0 mkl_py37hfdbf31d_0], which requires
│ └─ python >=3.7,<3.8.0a0 , which conflicts with any installable versions previously reported;
├─ tensorflow 2.10.0 would require
│ └─ tensorflow-base [2.10.0 eigen_py310ha372be2_0|2.10.0 mkl_py310hfdbf31d_0], which requires
│ └─ openssl >=1.1.1s,<1.1.2a , which conflicts with any installable versions previously reported;
├─ tensorflow 2.10.0 would require
│ └─ tensorflow-base [2.10.0 eigen_py38ha372be2_0|2.10.0 mkl_py38hfdbf31d_0], which requires
│ └─ python >=3.8,<3.9.0a0 , which conflicts with any installable versions previously reported;
└─ tensorflow 2.10.0 would require
└─ tensorflow-base [2.10.0 eigen_py39ha372be2_0|2.10.0 mkl_py39hfdbf31d_0], which requires
└─ python >=3.9,<3.10.0a0 , which conflicts with any installable versions previously reported.
Quitting from lines 145-150 [unnamed-chunk-9] (pareg.Rmd)
Error: processing vignette 'pareg.Rmd' failed with diagnostics:
one or more Python packages failed to install [error code 1]
--- failed re-building ‘pareg.Rmd’
--- re-building ‘pathway_similarities.Rmd’ using rmarkdown
--- finished re-building ‘pathway_similarities.Rmd’
SUMMARY: processing the following file failed:
‘pareg.Rmd’
Error: Vignette re-building failed.
Execution halted