Back to Multiple platform build/check report for BioC 3.21:   simplified   long
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This page was generated on 2024-11-18 11:34 -0500 (Mon, 18 Nov 2024).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 24.04.1 LTS)x86_64R Under development (unstable) (2024-10-21 r87258) -- "Unsuffered Consequences" 4740
palomino7Windows Server 2022 Datacenterx64R Under development (unstable) (2024-10-26 r87273 ucrt) -- "Unsuffered Consequences" 4454
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 1287/2268HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
mobileRNA 1.3.0  (landing page)
Katie Jeynes-Cupper
Snapshot Date: 2024-11-17 13:40 -0500 (Sun, 17 Nov 2024)
git_url: https://git.bioconductor.org/packages/mobileRNA
git_branch: devel
git_last_commit: d0f0d6c
git_last_commit_date: 2024-10-29 11:27:50 -0500 (Tue, 29 Oct 2024)
nebbiolo1Linux (Ubuntu 24.04.1 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
palomino7Windows Server 2022 Datacenter / x64  OK    OK    OK    OK  NO, package depends on 'DESeq2' which is only available as a source package that needs compilation


CHECK results for mobileRNA on palomino7

To the developers/maintainers of the mobileRNA package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/mobileRNA.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: mobileRNA
Version: 1.3.0
Command: E:\biocbuild\bbs-3.21-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:mobileRNA.install-out.txt --library=E:\biocbuild\bbs-3.21-bioc\R\library --no-vignettes --timings mobileRNA_1.3.0.tar.gz
StartedAt: 2024-11-18 02:36:20 -0500 (Mon, 18 Nov 2024)
EndedAt: 2024-11-18 02:42:09 -0500 (Mon, 18 Nov 2024)
EllapsedTime: 349.1 seconds
RetCode: 0
Status:   OK  
CheckDir: mobileRNA.Rcheck
Warnings: 0

Command output

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### Running command:
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###   E:\biocbuild\bbs-3.21-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:mobileRNA.install-out.txt --library=E:\biocbuild\bbs-3.21-bioc\R\library --no-vignettes --timings mobileRNA_1.3.0.tar.gz
###
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* using log directory 'E:/biocbuild/bbs-3.21-bioc/meat/mobileRNA.Rcheck'
* using R Under development (unstable) (2024-10-26 r87273 ucrt)
* using platform: x86_64-w64-mingw32
* R was compiled by
    gcc.exe (GCC) 13.2.0
    GNU Fortran (GCC) 13.2.0
* running under: Windows Server 2022 x64 (build 20348)
* using session charset: UTF-8
* using option '--no-vignettes'
* checking for file 'mobileRNA/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'mobileRNA' version '1.3.0'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'mobileRNA' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in 'vignettes' ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
                         user system elapsed
RNAdistribution         14.44   0.20   14.67
RNAdicercall            14.05   0.31   14.36
RNAsubset               13.23   0.21   13.43
RNAdifferentialAnalysis  9.69   0.19    9.89
RNAsummary               6.48   0.09    6.58
plotSampleDistance       5.00   0.06    5.06
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK


Installation output

mobileRNA.Rcheck/00install.out

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###
### Running command:
###
###   E:\biocbuild\bbs-3.21-bioc\R\bin\R.exe CMD INSTALL mobileRNA
###
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* installing to library 'E:/biocbuild/bbs-3.21-bioc/R/library'
* installing *source* package 'mobileRNA' ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (mobileRNA)

Tests output


Example timings

mobileRNA.Rcheck/mobileRNA-Ex.timings

nameusersystemelapsed
RNAattributes1.570.001.58
RNAdf2se0.350.030.39
RNAdicercall14.05 0.3114.36
RNAdifferentialAnalysis9.690.199.89
RNAdistribution14.44 0.2014.67
RNAfeatures1.570.011.60
RNAimport000
RNAmergeAnnotations0.380.040.40
RNAmergeGenomes0.080.000.08
RNAmobile0.870.040.92
RNApopulation2.380.032.41
RNAreorder0.170.020.19
RNAsequences1.910.092.00
RNAsubset13.23 0.2113.43
RNAsummary6.480.096.58
mRNA_data0.050.000.05
mapRNA000
plotHeatmap0.940.020.95
plotRNAfeatures1.440.001.44
plotSampleDistance5.000.065.06
plotSamplePCA4.010.064.08
sRNA_data0.140.020.16