Michael Lawrence
| Snapshot Date: 2024-11-17 13:40 -0500 (Sun, 17 Nov 2024) |
| git_url: https://git.bioconductor.org/packages/biovizBase |
| git_branch: devel |
| git_last_commit: 85d7c94 |
| git_last_commit_date: 2024-10-29 09:38:40 -0500 (Tue, 29 Oct 2024) |
| Back to Multiple platform build/check report for BioC 3.21: simplified long |
|
This page was generated on 2024-11-18 11:34 -0500 (Mon, 18 Nov 2024).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 24.04.1 LTS) | x86_64 | R Under development (unstable) (2024-10-21 r87258) -- "Unsuffered Consequences" | 4740 |
| palomino7 | Windows Server 2022 Datacenter | x64 | R Under development (unstable) (2024-10-26 r87273 ucrt) -- "Unsuffered Consequences" | 4454 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 219/2268 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| biovizBase 1.55.0 (landing page) Michael Lawrence
| nebbiolo1 | Linux (Ubuntu 24.04.1 LTS) / x86_64 | OK | OK | WARNINGS | | ||||||||
| palomino7 | Windows Server 2022 Datacenter / x64 | OK | OK | WARNINGS | OK | | ||||||||
|
To the developers/maintainers of the biovizBase package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/biovizBase.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: biovizBase |
| Version: 1.55.0 |
| Command: rm -rf biovizBase.buildbin-libdir && mkdir biovizBase.buildbin-libdir && E:\biocbuild\bbs-3.21-bioc\R\bin\R.exe CMD INSTALL --build --library=biovizBase.buildbin-libdir biovizBase_1.55.0.tar.gz |
| StartedAt: 2024-11-18 06:36:47 -0500 (Mon, 18 Nov 2024) |
| EndedAt: 2024-11-18 06:38:06 -0500 (Mon, 18 Nov 2024) |
| EllapsedTime: 78.8 seconds |
| RetCode: 0 |
| Status: OK |
| PackageFile: biovizBase_1.55.0.zip |
| PackageFileSize: 2.558 MiB |
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### Running command:
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### rm -rf biovizBase.buildbin-libdir && mkdir biovizBase.buildbin-libdir && E:\biocbuild\bbs-3.21-bioc\R\bin\R.exe CMD INSTALL --build --library=biovizBase.buildbin-libdir biovizBase_1.55.0.tar.gz
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* installing *source* package 'biovizBase' ...
** using staged installation
** libs
using C compiler: 'gcc.exe (GCC) 13.3.0'
gcc -I"E:/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c R_init_biovizBase.c -o R_init_biovizBase.o
gcc -I"E:/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c bin_offsets.c -o bin_offsets.o
bin_offsets.c: In function 'scan_bam_bin_offsets':
bin_offsets.c:57:15: warning: pointer targets in passing argument 1 of 'strncmp' differ in signedness [-Wpointer-sign]
57 | if (strncmp(b, "BAI\1", 4))
| ^
| |
| Rbyte * {aka unsigned char *}
In file included from E:/biocbuild/bbs-3.21-bioc/R/include/R_ext/RS.h:34,
from E:/biocbuild/bbs-3.21-bioc/R/include/Rdefines.h:38,
from bin_offsets.h:1,
from bin_offsets.c:3:
c:\rtools44\x86_64-w64-mingw32.static.posix\include\string.h:86:35: note: expected 'const char *' but argument is of type 'Rbyte *' {aka 'unsigned char *'}
86 | int __cdecl strncmp(const char *_Str1,const char *_Str2,size_t _MaxCount);
| ~~~~~~~~~~~~^~~~~
gcc -shared -s -static-libgcc -o biovizBase.dll tmp.def R_init_biovizBase.o bin_offsets.o -LC:/rtools44/x86_64-w64-mingw32.static.posix/lib/x64 -LC:/rtools44/x86_64-w64-mingw32.static.posix/lib -LE:/biocbuild/bbs-3.21-bioc/R/bin/x64 -lR
installing to E:/biocbuild/bbs-3.21-bioc/meat/biovizBase.buildbin-libdir/00LOCK-biovizBase/00new/biovizBase/libs/x64
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* MD5 sums
packaged installation of 'biovizBase' as biovizBase_1.55.0.zip
* DONE (biovizBase)