Back to Multiple platform build/check report for BioC 3.7 |
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This page was generated on 2018-10-17 08:56:04 -0400 (Wed, 17 Oct 2018).
Package 470/1561 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
ExperimentHubData 1.6.0 Bioconductor Package Maintainer
| malbec2 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | OK | OK | OK | ![]() | ||||||
tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | WARNINGS | OK | ![]() | ||||||
merida2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | [ OK ] | OK | ![]() |
Package: ExperimentHubData |
Version: 1.6.0 |
Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:ExperimentHubData.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings ExperimentHubData_1.6.0.tar.gz |
StartedAt: 2018-10-16 21:17:55 -0400 (Tue, 16 Oct 2018) |
EndedAt: 2018-10-16 21:21:46 -0400 (Tue, 16 Oct 2018) |
EllapsedTime: 230.8 seconds |
RetCode: 0 |
Status: OK |
CheckDir: ExperimentHubData.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:ExperimentHubData.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings ExperimentHubData_1.6.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/Users/biocbuild/bbs-3.7-bioc/meat/ExperimentHubData.Rcheck’ * using R version 3.5.1 Patched (2018-07-12 r74967) * using platform: x86_64-apple-darwin15.6.0 (64-bit) * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘ExperimentHubData/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘ExperimentHubData’ version ‘1.6.0’ * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘ExperimentHubData’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... NOTE makeExperimentHubMetadata : <anonymous>: no visible binding for global variable ‘Title’ makeExperimentHubMetadata : <anonymous>: no visible binding for global variable ‘Description’ makeExperimentHubMetadata : <anonymous>: no visible binding for global variable ‘BiocVersion’ makeExperimentHubMetadata : <anonymous>: no visible binding for global variable ‘Genome’ makeExperimentHubMetadata : <anonymous>: no visible binding for global variable ‘SourceType’ makeExperimentHubMetadata : <anonymous>: no visible binding for global variable ‘SourceUrl’ makeExperimentHubMetadata : <anonymous>: no visible binding for global variable ‘SourceVersion’ makeExperimentHubMetadata : <anonymous>: no visible binding for global variable ‘Species’ makeExperimentHubMetadata : <anonymous>: no visible binding for global variable ‘TaxonomyId’ makeExperimentHubMetadata : <anonymous>: no visible binding for global variable ‘Coordinate_1_based’ makeExperimentHubMetadata : <anonymous>: no visible binding for global variable ‘DataProvider’ makeExperimentHubMetadata : <anonymous>: no visible binding for global variable ‘Maintainer’ makeExperimentHubMetadata : <anonymous>: no visible binding for global variable ‘RDataClass’ makeExperimentHubMetadata : <anonymous>: no visible binding for global variable ‘RDataDateAdded’ makeExperimentHubMetadata : <anonymous>: no visible binding for global variable ‘RDataPath’ makeExperimentHubMetadata : <anonymous>: no visible binding for global variable ‘DispatchClass’ makeExperimentHubMetadata : <anonymous>: no visible binding for global variable ‘PreparerClass’ Undefined global functions or variables: BiocVersion Coordinate_1_based DataProvider Description DispatchClass Genome Maintainer PreparerClass RDataClass RDataDateAdded RDataPath SourceType SourceUrl SourceVersion Species TaxonomyId Title * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 1 NOTE See ‘/Users/biocbuild/bbs-3.7-bioc/meat/ExperimentHubData.Rcheck/00check.log’ for details.
ExperimentHubData.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD INSTALL ExperimentHubData ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/3.5/Resources/library’ * installing *source* package ‘ExperimentHubData’ ... ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded * DONE (ExperimentHubData)
ExperimentHubData.Rcheck/ExperimentHubData-Ex.timings
name | user | system | elapsed | |
ExperimentHubMetadata-class | 0.006 | 0.002 | 0.007 | |
addResources | 0.002 | 0.000 | 0.002 | |
makeExperimentHubMetadata | 0.003 | 0.000 | 0.003 | |