Markus Riester
| Snapshot Date: 2018-04-11 16:45:18 -0400 (Wed, 11 Apr 2018) |
| URL: https://git.bioconductor.org/packages/PureCN |
| Branch: RELEASE_3_6 |
| Last Commit: 09a4498 |
| Last Changed Date: 2017-12-09 18:37:29 -0400 (Sat, 09 Dec 2017) |
| Back to Multiple platform build/check report for BioC 3.6 |
|
This page was generated on 2018-04-12 13:28:02 -0400 (Thu, 12 Apr 2018).
| Package 1088/1472 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| PureCN 1.8.1 Markus Riester
| malbec1 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | NotNeeded | OK | OK | | ||||||
| tokay1 | Windows Server 2012 R2 Standard / x64 | NotNeeded | OK | OK | [ OK ] | | ||||||
| veracruz1 | OS X 10.11.6 El Capitan / x86_64 | NotNeeded | OK | OK | OK | |
| Package: PureCN |
| Version: 1.8.1 |
| Command: cd PureCN.buildbin-libdir/PureCN && zip -r ../../PureCN_1.8.1.zip . & cd ../.. |
| StartedAt: 2018-04-12 04:58:07 -0400 (Thu, 12 Apr 2018) |
| EndedAt: 2018-04-12 04:58:38 -0400 (Thu, 12 Apr 2018) |
| EllapsedTime: 30.5 seconds |
| RetCode: 0 |
| Status: OK |
| PackageFile: PureCN_1.8.1.zip |
| PackageFileSize: 8.65 MiB |
############################################################################## ############################################################################## ### ### Running command: ### ### cd PureCN.buildbin-libdir/PureCN && zip -r ../../PureCN_1.8.1.zip . & cd ../.. ### ############################################################################## ############################################################################## adding: CITATION (332 bytes security) (deflated 58%) adding: data/ (372 bytes security) (stored 0%) adding: data/centromeres.rda (332 bytes security) (stored 0%) adding: data/purecn.example.output.rda (332 bytes security) (deflated 0%) adding: DESCRIPTION (332 bytes security) (deflated 44%) adding: doc/ (372 bytes security) (stored 0%) adding: doc/index.html (332 bytes security) (deflated 66%) adding: doc/PureCN.pdf (332 bytes security) (deflated 9%) adding: doc/PureCN.R (332 bytes security) (deflated 73%) adding: doc/PureCN.Rnw (332 bytes security) (deflated 68%) adding: doc/Quick.pdf (332 bytes security) (deflated 11%) adding: doc/Quick.R (332 bytes security) (deflated 53%) adding: doc/Quick.Rnw (332 bytes security) (deflated 70%) adding: extdata/ (372 bytes security) (stored 0%) adding: extdata/Coverage.R (332 bytes security) (deflated 71%) adding: extdata/downloadCentromeres.R (332 bytes security) (deflated 55%) adding: extdata/Dx.R (332 bytes security) (deflated 67%) adding: extdata/ex1.bam (332 bytes security) (deflated 0%) adding: extdata/ex1.bam.bai (332 bytes security) (deflated 63%) adding: extdata/ex1_gcgene.txt (332 bytes security) (deflated 31%) adding: extdata/ex1_intervals.txt (332 bytes security) (deflated 35%) adding: extdata/ex2_intervals.bed (332 bytes security) (deflated 35%) adding: extdata/ex2_intervals.txt (332 bytes security) (deflated 34%) adding: extdata/ex2_mappability.bed (332 bytes security) (deflated 48%) adding: extdata/ex2_mappability.bigWig (332 bytes security) (deflated 98%) adding: extdata/ex2_reference.fa (332 bytes security) (deflated 63%) adding: extdata/ex2_reference.fa.fai (332 bytes security) (deflated 22%) adding: extdata/ex3_intervals.bed (332 bytes security) (deflated 35%) adding: extdata/ex3_mappability.bed (332 bytes security) (deflated 49%) adding: extdata/ex3_reference.fa (332 bytes security) (deflated 63%) adding: extdata/ex3_reference.fa.fai (332 bytes security) (deflated 22%) adding: extdata/example_callable.bed.gz (332 bytes security) (deflated 0%) adding: extdata/example_cosmic.vcf.gz (332 bytes security) (stored 0%) adding: extdata/example_cosmic.vcf.gz.tbi (332 bytes security) (deflated 39%) adding: extdata/example_gc.gene.file.txt (332 bytes security) (deflated 70%) adding: extdata/example_gc.gene.file2.txt (332 bytes security) (deflated 70%) adding: extdata/example_normal.list (332 bytes security) (deflated 31%) adding: extdata/example_normal.txt (332 bytes security) (deflated 59%) adding: extdata/example_normal2.txt (332 bytes security) (deflated 59%) adding: extdata/example_normal3.cnn (332 bytes security) (deflated 33%) adding: extdata/example_normal4.cnr (332 bytes security) (deflated 42%) adding: extdata/example_seg.txt (332 bytes security) (deflated 57%) adding: extdata/example_tumor.txt (332 bytes security) (deflated 59%) adding: extdata/example_vcf.vcf (332 bytes security) (deflated 74%) adding: extdata/FilterCallableLoci.R (332 bytes security) (deflated 62%) adding: extdata/IntervalFile.R (332 bytes security) (deflated 71%) adding: extdata/NormalDB.R (332 bytes security) (deflated 64%) adding: extdata/normalpanel.vcf.gz (332 bytes security) (stored 0%) adding: extdata/normalpanel.vcf.gz.tbi (332 bytes security) (deflated 44%) adding: extdata/PureCN.R (332 bytes security) (deflated 74%) adding: extdata/test_coverage_overlapping_intervals.txt (332 bytes security) (deflated 55%) adding: help/ (372 bytes security) (stored 0%) adding: help/aliases.rds (332 bytes security) (stored 0%) adding: help/AnIndex (332 bytes security) (deflated 68%) adding: help/paths.rds (332 bytes security) (stored 0%) adding: help/PureCN.rdb (332 bytes security) (deflated 1%) adding: help/PureCN.rdx (332 bytes security) (stored 0%) adding: html/ (372 bytes security) (stored 0%) adding: html/00Index.html (332 bytes security) (deflated 75%) adding: html/annotateTargets.html (332 bytes security) (deflated 54%) adding: html/autoCurateResults.html (332 bytes security) (deflated 44%) adding: html/bootstrapResults.html (332 bytes security) (deflated 56%) adding: html/calculateBamCoverageByInterval.html (332 bytes security) (deflated 60%) adding: html/calculateGCContentByInterval.html (332 bytes security) (deflated 63%) adding: html/calculateLogRatio.html (332 bytes security) (deflated 58%) adding: html/calculatePowerDetectSomatic.html (332 bytes security) (deflated 65%) adding: html/callAlterations.html (332 bytes security) (deflated 60%) adding: html/callAlterationsFromSegmentation.html (332 bytes security) (deflated 63%) adding: html/callLOH.html (332 bytes security) (deflated 52%) adding: html/callMutationBurden.html (332 bytes security) (deflated 61%) adding: html/centromeres.html (332 bytes security) (deflated 59%) adding: html/correctCoverageBias.html (332 bytes security) (deflated 60%) adding: html/createCurationFile.html (332 bytes security) (deflated 57%) adding: html/createNormalDatabase.html (332 bytes security) (deflated 60%) adding: html/createSNPBlacklist.html (332 bytes security) (deflated 44%) adding: html/createTargetWeights.html (332 bytes security) (deflated 60%) adding: html/filterTargets.html (332 bytes security) (deflated 63%) adding: html/filterVcfBasic.html (332 bytes security) (deflated 63%) adding: html/filterVcfMuTect.html (332 bytes security) (deflated 56%) adding: html/filterVcfMuTect2.html (332 bytes security) (deflated 55%) adding: html/findBestNormal.html (332 bytes security) (deflated 67%) adding: html/findFocal.html (332 bytes security) (deflated 58%) adding: html/getDiploid.html (332 bytes security) (deflated 43%) adding: html/getSexFromCoverage.html (332 bytes security) (deflated 55%) adding: html/getSexFromVcf.html (332 bytes security) (deflated 58%) adding: html/plotAbs.html (332 bytes security) (deflated 63%) adding: html/plotBestNormal.html (332 bytes security) (deflated 67%) adding: html/poolCoverage.html (332 bytes security) (deflated 59%) adding: html/predictSomatic.html (332 bytes security) (deflated 57%) adding: html/PureCN-defunct.html (332 bytes security) (deflated 52%) adding: html/PureCN-deprecated.html (332 bytes security) (deflated 46%) adding: html/purecn.example.output.html (332 bytes security) (deflated 48%) adding: html/R.css (332 bytes security) (deflated 75%) adding: html/readCoverageFile.html (332 bytes security) (deflated 54%) adding: html/readCoverageGatk.html (332 bytes security) (deflated 50%) adding: html/readCurationFile.html (332 bytes security) (deflated 61%) adding: html/runAbsoluteCN.html (332 bytes security) (deflated 70%) adding: html/segmentationCBS.html (332 bytes security) (deflated 65%) adding: html/segmentationPSCBS.html (332 bytes security) (deflated 66%) adding: html/setMappingBiasVcf.html (332 bytes security) (deflated 59%) adding: html/setPriorVcf.html (332 bytes security) (deflated 54%) adding: INDEX (332 bytes security) (deflated 64%) adding: MD5 (332 bytes security) (deflated 52%) adding: Meta/ (372 bytes security) (stored 0%) adding: Meta/data.rds (332 bytes security) (stored 0%) adding: Meta/features.rds (332 bytes security) (stored 0%) adding: Meta/hsearch.rds (332 bytes security) (stored 0%) adding: Meta/links.rds (332 bytes security) (stored 0%) adding: Meta/nsInfo.rds (332 bytes security) (stored 0%) adding: Meta/package.rds (332 bytes security) (stored 0%) adding: Meta/Rd.rds (332 bytes security) (stored 0%) adding: Meta/vignette.rds (332 bytes security) (stored 0%) adding: NAMESPACE (332 bytes security) (deflated 73%) adding: NEWS (332 bytes security) (deflated 53%) adding: R/ (372 bytes security) (stored 0%) adding: R/PureCN (332 bytes security) (deflated 41%) adding: R/PureCN.rdb (332 bytes security) (deflated 0%) adding: R/PureCN.rdx (332 bytes security) (stored 0%) adding: unitTests/ (372 bytes security) (stored 0%) adding: unitTests/test_annotateTargets.R (332 bytes security) (deflated 54%) adding: unitTests/test_bootstrapResults.R (332 bytes security) (deflated 66%) adding: unitTests/test_calculateBamCoverageByInterval.R (332 bytes security) (deflated 62%) adding: unitTests/test_calculateGCContentByInterval.R (332 bytes security) (deflated 78%) adding: unitTests/test_calculatePowerDetectSomatic.R (332 bytes security) (deflated 73%) adding: unitTests/test_callAlterations.R (332 bytes security) (deflated 54%) adding: unitTests/test_callAlterationsFromSegmentation.R (332 bytes security) (deflated 54%) adding: unitTests/test_callLOH.R (332 bytes security) (deflated 62%) adding: unitTests/test_callMutationBurden.R (332 bytes security) (deflated 70%) adding: unitTests/test_correctCoverageBias.R (332 bytes security) (deflated 69%) adding: unitTests/test_createCurationFile.R (332 bytes security) (deflated 80%) adding: unitTests/test_createNormalDatabase.R (332 bytes security) (deflated 74%) adding: unitTests/test_filterVcf.R (332 bytes security) (deflated 58%) adding: unitTests/test_findFocal.R (332 bytes security) (deflated 48%) adding: unitTests/test_getSexFromCoverage.R (332 bytes security) (deflated 71%) adding: unitTests/test_getSexFromVcf.R (332 bytes security) (deflated 37%) adding: unitTests/test_poolCoverage.R (332 bytes security) (deflated 65%) adding: unitTests/test_predictSomatic.R (332 bytes security) (deflated 61%) adding: unitTests/test_readCoverageFile.R (332 bytes security) (deflated 74%) adding: unitTests/test_runAbsoluteCN.R (332 bytes security) (deflated 81%) adding: unitTests/test_setMappingBiasVcf.R (332 bytes security) (deflated 63%) adding: unitTests/test_setPriorVcf.R (332 bytes security) (deflated 44%)