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BioC 3.5: CHECK report for Prize on tokay2

This page was generated on 2017-10-18 14:24:57 -0400 (Wed, 18 Oct 2017).

Package 1008/1381HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
Prize 1.6.0
Daryanaz Dargahi
Snapshot Date: 2017-10-17 17:00:52 -0400 (Tue, 17 Oct 2017)
URL: https://git.bioconductor.org/packages/Prize
Branch: RELEASE_3_5
Last Commit: 7d7a561
Last Changed Date: 2017-04-24 15:45:44 -0400 (Mon, 24 Apr 2017)
malbec2 Linux (Ubuntu 16.04.1 LTS) / x86_64  NotNeeded  OK  OK UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64  NotNeeded  OK [ OK ] OK UNNEEDED, same version exists in internal repository
veracruz2 OS X 10.11.6 El Capitan / x86_64  NotNeeded  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: Prize
Version: 1.6.0
Command: rm -rf Prize.buildbin-libdir Prize.Rcheck && mkdir Prize.buildbin-libdir Prize.Rcheck && C:\Users\biocbuild\bbs-3.5-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=Prize.buildbin-libdir Prize_1.6.0.tar.gz >Prize.Rcheck\00install.out 2>&1 && cp Prize.Rcheck\00install.out Prize-install.out && C:\Users\biocbuild\bbs-3.5-bioc\R\bin\R.exe CMD check --library=Prize.buildbin-libdir --install="check:Prize-install.out" --force-multiarch --no-vignettes --timings Prize_1.6.0.tar.gz
StartedAt: 2017-10-18 02:08:14 -0400 (Wed, 18 Oct 2017)
EndedAt: 2017-10-18 02:10:57 -0400 (Wed, 18 Oct 2017)
EllapsedTime: 163.4 seconds
RetCode: 0
Status:  OK  
CheckDir: Prize.Rcheck
Warnings: 0

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf Prize.buildbin-libdir Prize.Rcheck && mkdir Prize.buildbin-libdir Prize.Rcheck && C:\Users\biocbuild\bbs-3.5-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=Prize.buildbin-libdir Prize_1.6.0.tar.gz >Prize.Rcheck\00install.out 2>&1 && cp Prize.Rcheck\00install.out Prize-install.out  &&  C:\Users\biocbuild\bbs-3.5-bioc\R\bin\R.exe CMD check --library=Prize.buildbin-libdir --install="check:Prize-install.out" --force-multiarch --no-vignettes --timings Prize_1.6.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory 'C:/Users/biocbuild/bbs-3.5-bioc/meat/Prize.Rcheck'
* using R version 3.4.2 Patched (2017-10-07 r73498)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'Prize/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'Prize' version '1.6.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'Prize' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
Examples with CPU or elapsed time > 5s
              user system elapsed
Prize-package 8.44   0.02    8.48
** running examples for arch 'x64' ... OK
Examples with CPU or elapsed time > 5s
              user system elapsed
Prize-package 8.95   0.02    8.97
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
** running tests for arch 'i386' ...
  Running 'runTests.R'
 OK
** running tests for arch 'x64' ...
  Running 'runTests.R'
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK

Prize.Rcheck/00install.out:


install for i386

* installing *source* package 'Prize' ...
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded

install for x64

* installing *source* package 'Prize' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'Prize' as Prize_1.6.0.zip
* DONE (Prize)

Prize.Rcheck/examples_i386/Prize-Ex.timings:

nameusersystemelapsed
AIJ1.590.001.59
AIP1.110.001.11
CI1.490.001.49
GCR1.480.001.48
ICR2.440.002.44
IP2.530.002.53
Prize-package8.440.028.48
RM0.300.010.32
ahmatrix000
ahp0.440.000.44
ahp_matrix000
ahp_plot2.440.002.44
ahp_weights3.260.003.26
ahplot0.210.000.21
crplot0.260.000.26
dplot0.170.000.17
gaggregate3.140.003.14
pipeline2.190.002.19
rainbow_plot2.140.002.14
rainbowplot0.170.000.17
rating0.50.00.5
saaty_inconsistency303
simulation2.140.002.15
weight0.520.000.51
weight_plot2.170.002.17
wplot0.390.000.39

Prize.Rcheck/examples_x64/Prize-Ex.timings:

nameusersystemelapsed
AIJ2.070.002.07
AIP1.340.001.34
CI1.860.001.86
GCR1.870.001.88
ICR3.160.003.15
IP3.470.003.47
Prize-package8.950.028.97
RM0.580.000.58
ahmatrix000
ahp0.420.000.42
ahp_matrix000
ahp_plot2.960.012.97
ahp_weights2.760.002.76
ahplot0.200.020.22
crplot0.30.00.3
dplot0.20.00.2
gaggregate3.880.003.88
pipeline2.370.002.37
rainbow_plot2.690.002.69
rainbowplot0.280.000.28
rating0.660.000.66
saaty_inconsistency4.000.014.01
simulation2.550.002.55
weight0.610.000.61
weight_plot2.420.002.43
wplot0.530.000.53