MEIGOR 1.10.0
Jose Egea
| Snapshot Date: 2017-10-17 17:00:52 -0400 (Tue, 17 Oct 2017) | | URL: https://git.bioconductor.org/packages/MEIGOR | | Branch: RELEASE_3_5 | | Last Commit: a657a49 | | Last Changed Date: 2017-04-24 15:45:44 -0400 (Mon, 24 Apr 2017) |
| malbec2 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | NotNeeded | OK | OK | |  |
| tokay2 | Windows Server 2012 R2 Standard / x64 | NotNeeded | OK | [ OK ] | OK | |
| veracruz2 | OS X 10.11.6 El Capitan / x86_64 | NotNeeded | OK | OK | OK | |
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### Running command:
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### rm -rf MEIGOR.buildbin-libdir MEIGOR.Rcheck && mkdir MEIGOR.buildbin-libdir MEIGOR.Rcheck && C:\Users\biocbuild\bbs-3.5-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=MEIGOR.buildbin-libdir MEIGOR_1.10.0.tar.gz >MEIGOR.Rcheck\00install.out 2>&1 && cp MEIGOR.Rcheck\00install.out MEIGOR-install.out && C:\Users\biocbuild\bbs-3.5-bioc\R\bin\R.exe CMD check --library=MEIGOR.buildbin-libdir --install="check:MEIGOR-install.out" --force-multiarch --no-vignettes --timings MEIGOR_1.10.0.tar.gz
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* using log directory 'C:/Users/biocbuild/bbs-3.5-bioc/meat/MEIGOR.Rcheck'
* using R version 3.4.2 Patched (2017-10-07 r73498)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'MEIGOR/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'MEIGOR' version '1.10.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'MEIGOR' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Malformed Description field: should contain one or more complete sentences.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
CeSSR: no visible global function definition for 'sd'
CeSSR: no visible binding for global variable 'sd'
between_chain_variances: no visible global function definition for
'var'
essR: no visible global function definition for 'combn'
essR: no visible global function definition for 'runif'
essR_multistart: no visible global function definition for 'runif'
essR_multistart: no visible global function definition for 'hist'
estimate: no visible global function definition for 'runif'
generate_new_position: no visible global function definition for
'rnorm'
initialize: no visible global function definition for 'runif'
initialize_and_pool: no visible binding for global variable 'mulichain'
nls_fobj: no visible binding for global variable 'fobj_global'
nls_fobj: no visible binding for '<<-' assignment to 'n_fun_eval'
nls_fobj: no visible binding for global variable 'n_fun_eval'
optim_fobj: no visible binding for global variable 'fobj_global'
optim_fobj: no visible binding for '<<-' assignment to 'n_fun_eval'
optim_fobj: no visible binding for global variable 'n_fun_eval'
runBayesFit : prior: no visible binding for global variable
'prior_mean'
runBayesFit : prior: no visible binding for global variable 'prior_var'
rvnds_hamming: no visible global function definition for 'runif'
solnp_eq: no visible binding for global variable 'fobj_global'
solnp_eq: no visible binding for '<<-' assignment to 'n_fun_eval'
solnp_eq: no visible binding for global variable 'n_fun_eval'
solnp_eq: no visible binding for global variable 'neq_global'
solnp_fobj: no visible binding for global variable 'fobj_global'
solnp_fobj: no visible binding for '<<-' assignment to 'n_fun_eval'
solnp_fobj: no visible binding for global variable 'n_fun_eval'
solnp_ineq: no visible binding for global variable 'fobj_global'
solnp_ineq: no visible binding for '<<-' assignment to 'n_fun_eval'
solnp_ineq: no visible binding for global variable 'n_fun_eval'
solnp_ineq: no visible binding for global variable 'neq_global'
solnp_ineq: no visible binding for global variable 'nconst_global'
ssm_beyond: no visible global function definition for 'runif'
ssm_defaults: no visible binding for global variable 'plot'
ssm_localsolver: no visible binding for '<<-' assignment to
'n_fun_eval'
ssm_localsolver: no visible binding for '<<-' assignment to
'fobj_global'
ssm_localsolver: no visible binding for '<<-' assignment to
'neq_global'
ssm_localsolver: no visible binding for '<<-' assignment to
'nconst_global'
ssm_localsolver: no visible binding for '<<-' assignment to
'extra_args'
ssm_localsolver: no visible global function definition for 'optim'
ssm_localsolver: no visible binding for global variable 'n_fun_eval'
ssm_localsolver: no visible global function definition for 'nls'
ssm_localsolver: no visible binding for global variable 'extra_args'
ssm_localsolver: no visible global function definition for 'coef'
within_chain_variances: no visible global function definition for 'var'
Undefined global functions or variables:
coef combn extra_args fobj_global hist mulichain n_fun_eval
nconst_global neq_global nls optim plot prior_mean prior_var rnorm
runif sd var
Consider adding
importFrom("graphics", "hist", "plot")
importFrom("stats", "coef", "nls", "optim", "rnorm", "runif", "sd",
"var")
importFrom("utils", "combn")
to your NAMESPACE file.
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
Examples with CPU or elapsed time > 5s
user system elapsed
essR 10.48 0.04 10.54
cur_params 7.05 0.02 7.10
runBayesFit 5.89 0.02 5.90
CeVNSR 0.97 0.02 10.75
CeSSR 0.33 0.03 5.93
** running examples for arch 'x64' ... OK
Examples with CPU or elapsed time > 5s
user system elapsed
essR 11.10 0.03 11.14
cur_params 7.52 0.02 7.58
runBayesFit 7.16 0.00 7.16
CeVNSR 1.07 0.03 10.82
CeSSR 0.47 0.03 8.11
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 2 NOTEs
See
'C:/Users/biocbuild/bbs-3.5-bioc/meat/MEIGOR.Rcheck/00check.log'
for details.
install for i386
* installing *source* package 'MEIGOR' ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
install for x64
* installing *source* package 'MEIGOR' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'MEIGOR' as MEIGOR_1.10.0.zip
* DONE (MEIGOR)