BioC 3.5: CHECK report for MBAmethyl on tokay2

Package: MBAmethyl

Version: 1.10.0

Command: rm -rf MBAmethyl.buildbin-libdir MBAmethyl.Rcheck && mkdir MBAmethyl.buildbin-libdir MBAmethyl.Rcheck && C:\Users\biocbuild\bbs-3.5-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=MBAmethyl.buildbin-libdir MBAmethyl_1.10.0.tar.gz >MBAmethyl.Rcheck\00install.out 2>&1 && cp MBAmethyl.Rcheck\00install.out MBAmethyl-install.out && C:\Users\biocbuild\bbs-3.5-bioc\R\bin\R.exe CMD check --library=MBAmethyl.buildbin-libdir --install="check:MBAmethyl-install.out" --force-multiarch --no-vignettes --timings MBAmethyl_1.10.0.tar.gz

StartedAt: 2017-10-18 01:05:02 -0400 (Wed, 18 Oct 2017)

EndedAt: 2017-10-18 01:05:30 -0400 (Wed, 18 Oct 2017)

EllapsedTime: 28.5 seconds

RetCode: 0

Status:  OK

CheckDir: MBAmethyl.Rcheck

Warnings: 0

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf MBAmethyl.buildbin-libdir MBAmethyl.Rcheck && mkdir MBAmethyl.buildbin-libdir MBAmethyl.Rcheck && C:\Users\biocbuild\bbs-3.5-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=MBAmethyl.buildbin-libdir MBAmethyl_1.10.0.tar.gz >MBAmethyl.Rcheck\00install.out 2>&1 && cp MBAmethyl.Rcheck\00install.out MBAmethyl-install.out  &&  C:\Users\biocbuild\bbs-3.5-bioc\R\bin\R.exe CMD check --library=MBAmethyl.buildbin-libdir --install="check:MBAmethyl-install.out" --force-multiarch --no-vignettes --timings MBAmethyl_1.10.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory 'C:/Users/biocbuild/bbs-3.5-bioc/meat/MBAmethyl.Rcheck'
* using R version 3.4.2 Patched (2017-10-07 r73498)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'MBAmethyl/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'MBAmethyl' version '1.10.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'MBAmethyl' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
** running examples for arch 'x64' ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK

install for i386

* installing *source* package 'MBAmethyl' ...
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded

install for x64

* installing *source* package 'MBAmethyl' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'MBAmethyl' as MBAmethyl_1.10.0.zip
* DONE (MBAmethyl)

name	user	system	elapsed
MBAmethyl-package	0.78	0.00	0.78
MBAmethyl	0.67	0.00	0.68

name	user	system	elapsed
MBAmethyl-package	0.92	0.00	0.92
MBAmethyl	0.83	0.00	0.83