ATACseqQC 1.0.5
Jianhong Ou
| Snapshot Date: 2017-10-17 17:00:52 -0400 (Tue, 17 Oct 2017) | | URL: https://git.bioconductor.org/packages/ATACseqQC | | Branch: RELEASE_3_5 | | Last Commit: 3ed5c35 | | Last Changed Date: 2017-08-28 20:15:04 -0400 (Mon, 28 Aug 2017) |
| malbec2 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | NotNeeded | OK | OK | |  |
| tokay2 | Windows Server 2012 R2 Standard / x64 | NotNeeded | OK | [ OK ] | OK | |
| veracruz2 | OS X 10.11.6 El Capitan / x86_64 | NotNeeded | OK | OK | OK | |
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### Running command:
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### rm -rf ATACseqQC.buildbin-libdir ATACseqQC.Rcheck && mkdir ATACseqQC.buildbin-libdir ATACseqQC.Rcheck && C:\Users\biocbuild\bbs-3.5-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=ATACseqQC.buildbin-libdir ATACseqQC_1.0.5.tar.gz >ATACseqQC.Rcheck\00install.out 2>&1 && cp ATACseqQC.Rcheck\00install.out ATACseqQC-install.out && C:\Users\biocbuild\bbs-3.5-bioc\R\bin\R.exe CMD check --library=ATACseqQC.buildbin-libdir --install="check:ATACseqQC-install.out" --force-multiarch --no-vignettes --timings ATACseqQC_1.0.5.tar.gz
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* using log directory 'C:/Users/biocbuild/bbs-3.5-bioc/meat/ATACseqQC.Rcheck'
* using R version 3.4.2 Patched (2017-10-07 r73498)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'ATACseqQC/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'ATACseqQC' version '1.0.5'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'ATACseqQC' can be installed ... OK
* checking installed package size ... NOTE
installed size is 8.4Mb
sub-directories of 1Mb or more:
extdata 7.5Mb
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
Examples with CPU or elapsed time > 5s
user system elapsed
splitBam 91.27 1.66 93.34
enrichedFragments 90.14 2.17 92.31
shiftGAlignmentsList 22.72 0.31 23.03
factorFootprints 20.14 0.27 21.86
splitGAlignmentsByCut 5.80 0.69 6.49
** running examples for arch 'x64' ... OK
Examples with CPU or elapsed time > 5s
user system elapsed
enrichedFragments 114.83 2.43 117.28
splitBam 114.59 1.83 116.72
shiftGAlignmentsList 26.25 0.25 26.51
factorFootprints 21.83 0.32 23.36
splitGAlignmentsByCut 7.17 0.89 8.06
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 1 NOTE
See
'C:/Users/biocbuild/bbs-3.5-bioc/meat/ATACseqQC.Rcheck/00check.log'
for details.
install for i386
* installing *source* package 'ATACseqQC' ...
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
install for x64
* installing *source* package 'ATACseqQC' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'ATACseqQC' as ATACseqQC_1.0.5.zip
* DONE (ATACseqQC)