seqplots 1.14.0
Przemyslaw Stempor
| Snapshot Date: 2017-08-15 17:17:57 -0400 (Tue, 15 Aug 2017) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_3_5/madman/Rpacks/seqplots | | Last Changed Rev: 131333 / Revision: 131943 | | Last Changed Date: 2017-07-18 16:15:46 -0400 (Tue, 18 Jul 2017) |
| malbec2 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | NotNeeded | OK | OK | |  |
| tokay2 | Windows Server 2012 R2 Standard / x64 | NotNeeded | OK | OK | [ OK ] | |
| veracruz2 | OS X 10.11.6 El Capitan / x86_64 | NotNeeded | OK | OK | OK | |
##############################################################################
##############################################################################
###
### Running command:
###
### cd seqplots.buildbin-libdir/seqplots && zip -r ../../seqplots_1.14.0.zip . & cd ../..
###
##############################################################################
##############################################################################
updating: seqplots/ (304 bytes security) (stored 0%)
adding: DESCRIPTION (264 bytes security) (deflated 50%)
adding: doc/ (304 bytes security) (stored 0%)
adding: doc/index.html (264 bytes security) (deflated 68%)
adding: doc/QuickStart.html (264 bytes security) (deflated 28%)
adding: doc/QuickStart.R (264 bytes security) (deflated 49%)
adding: doc/QuickStart.Rmd (264 bytes security) (deflated 43%)
adding: doc/SeqPlotsGUI.html (264 bytes security) (deflated 30%)
adding: doc/SeqPlotsGUI.R (264 bytes security) (deflated 73%)
adding: doc/SeqPlotsGUI.Rmd (264 bytes security) (deflated 45%)
adding: extdata/ (304 bytes security) (stored 0%)
adding: extdata/GSM1208360_chrI_100Kb_q5_sample.bw (264 bytes security) (deflated 72%)
adding: extdata/GSM1208361_chrI_100Kb_PeakCalls.bed (264 bytes security) (deflated 73%)
adding: extdata/precalc_plotset.Rdata (264 bytes security) (deflated 2%)
adding: extdata/Transcripts_ce10_chrI_100Kb.bed (264 bytes security) (deflated 61%)
adding: help/ (304 bytes security) (stored 0%)
adding: help/aliases.rds (264 bytes security) (stored 0%)
adding: help/AnIndex (264 bytes security) (deflated 77%)
adding: help/paths.rds (264 bytes security) (stored 0%)
adding: help/seqplots.rdb (264 bytes security) (deflated 1%)
adding: help/seqplots.rdx (264 bytes security) (stored 0%)
adding: html/ (304 bytes security) (stored 0%)
adding: html/00Index.html (264 bytes security) (deflated 77%)
adding: html/R.css (264 bytes security) (deflated 75%)
adding: INDEX (264 bytes security) (deflated 62%)
adding: MD5 (264 bytes security) (deflated 58%)
adding: Meta/ (304 bytes security) (stored 0%)
adding: Meta/features.rds (264 bytes security) (stored 0%)
adding: Meta/hsearch.rds (264 bytes security) (stored 0%)
adding: Meta/links.rds (264 bytes security) (stored 0%)
adding: Meta/nsInfo.rds (264 bytes security) (stored 0%)
adding: Meta/package.rds (264 bytes security) (stored 0%)
adding: Meta/Rd.rds (264 bytes security) (stored 0%)
adding: Meta/vignette.rds (264 bytes security) (stored 0%)
adding: NAMESPACE (264 bytes security) (deflated 60%)
adding: NEWS (264 bytes security) (deflated 62%)
adding: R/ (304 bytes security) (stored 0%)
adding: R/seqplots (264 bytes security) (deflated 41%)
adding: R/seqplots.rdb (264 bytes security) (deflated 13%)
adding: R/seqplots.rdx (264 bytes security) (stored 0%)
adding: seqplots/functions/ (304 bytes security) (stored 0%)
adding: seqplots/functions/doFileOperations.R (264 bytes security) (deflated 64%)
adding: seqplots/functions/LOCAL/ (304 bytes security) (stored 0%)
adding: seqplots/functions/LOCAL/mceval.R (264 bytes security) (deflated 71%)
adding: seqplots/functions/LOCAL/server_plotHeatmap.R (264 bytes security) (deflated 66%)
adding: seqplots/functions/LOCAL/server_plotLineplot.R (264 bytes security) (deflated 72%)
adding: seqplots/functions/mcCalcStart_calculations.R (264 bytes security) (deflated 69%)
adding: seqplots/functions/mcDoParallel_plotting.R (264 bytes security) (deflated 69%)
adding: seqplots/functions/renderHTMLgrid.R (264 bytes security) (deflated 83%)
adding: seqplots/global.R (264 bytes security) (deflated 45%)
adding: seqplots/server.R (264 bytes security) (deflated 72%)
adding: seqplots/server_config.R (264 bytes security) (deflated 25%)
adding: seqplots/ui/ (304 bytes security) (stored 0%)
adding: seqplots/ui/DataTablesColumnSetup.js (264 bytes security) (deflated 67%)
adding: seqplots/ui/DataTablesToolsSetup.js (264 bytes security) (deflated 65%)
adding: seqplots/ui/FileManagementModal.R (264 bytes security) (deflated 68%)
adding: seqplots/ui/loadModal.html (264 bytes security) (deflated 59%)
adding: seqplots/ui.R (264 bytes security) (deflated 71%)
adding: seqplots/www/ (304 bytes security) (stored 0%)
adding: seqplots/www/biodalliance.html (264 bytes security) (deflated 57%)
adding: seqplots/www/color/ (304 bytes security) (stored 0%)
adding: seqplots/www/color/arrow.gif (264 bytes security) (deflated 6%)
adding: seqplots/www/color/cross.gif (264 bytes security) (deflated 10%)
adding: seqplots/www/color/hs.png (264 bytes security) (deflated 0%)
adding: seqplots/www/color/hv.png (264 bytes security) (deflated 0%)
adding: seqplots/www/color/jscolor.js (264 bytes security) (deflated 74%)
adding: seqplots/www/css/ (304 bytes security) (stored 0%)
adding: seqplots/www/css/DT_bootstrap.css (264 bytes security) (deflated 75%)
adding: seqplots/www/css/font-awesome.min.css (264 bytes security) (deflated 80%)
adding: seqplots/www/css/images/ (304 bytes security) (stored 0%)
adding: seqplots/www/css/images/back_disabled.png (264 bytes security) (deflated 23%)
adding: seqplots/www/css/images/back_enabled.png (264 bytes security) (deflated 22%)
adding: seqplots/www/css/images/back_enabled_hover.png (264 bytes security) (deflated 23%)
adding: seqplots/www/css/images/forward_disabled.png (264 bytes security) (deflated 23%)
adding: seqplots/www/css/images/forward_enabled.png (264 bytes security) (deflated 23%)
adding: seqplots/www/css/images/forward_enabled_hover.png (264 bytes security) (deflated 22%)
adding: seqplots/www/css/images/sort_asc.png (264 bytes security) (deflated 33%)
adding: seqplots/www/css/images/sort_asc_disabled.png (264 bytes security) (deflated 32%)
adding: seqplots/www/css/images/sort_both.png (264 bytes security) (deflated 30%)
adding: seqplots/www/css/images/sort_desc.png (264 bytes security) (deflated 33%)
adding: seqplots/www/css/images/sort_desc_disabled.png (264 bytes security) (deflated 32%)
adding: seqplots/www/css/mask2.png (264 bytes security) (deflated 0%)
adding: seqplots/www/css/NewFont.woff (264 bytes security) (deflated 14%)
adding: seqplots/www/css/style.css (264 bytes security) (deflated 74%)
adding: seqplots/www/css/TableTools.css (264 bytes security) (deflated 79%)
adding: seqplots/www/font/ (304 bytes security) (stored 0%)
adding: seqplots/www/font/fontawesome-webfont.eot (264 bytes security) (deflated 0%)
adding: seqplots/www/font/fontawesome-webfont.svg (264 bytes security) (deflated 72%)
adding: seqplots/www/font/fontawesome-webfont.ttf (264 bytes security) (deflated 45%)
adding: seqplots/www/font/fontawesome-webfont.woff (264 bytes security) (deflated 0%)
adding: seqplots/www/font/FontAwesome.otf (264 bytes security) (deflated 20%)
adding: seqplots/www/help/ (304 bytes security) (stored 0%)
adding: seqplots/www/help/AdvOup.md (264 bytes security) (deflated 51%)
adding: seqplots/www/help/Batch.md (264 bytes security) (deflated 54%)
adding: seqplots/www/help/Errors.md (264 bytes security) (deflated 45%)
adding: seqplots/www/help/Files.md (264 bytes security) (deflated 56%)
adding: seqplots/www/help/Genomes.md (264 bytes security) (deflated 43%)
adding: seqplots/www/help/GUIplottingControls.md (264 bytes security) (deflated 85%)
adding: seqplots/www/help/Heatmaps.md (264 bytes security) (deflated 62%)
adding: seqplots/www/help/help.html (264 bytes security) (deflated 76%)
adding: seqplots/www/help/Home.md (264 bytes security) (deflated 52%)
adding: seqplots/www/help/Home2.md (264 bytes security) (deflated 50%)
adding: seqplots/www/help/img/ (304 bytes security) (stored 0%)
adding: seqplots/www/help/img/01_QuickStart/ (304 bytes security) (stored 0%)
adding: seqplots/www/help/img/01_QuickStart/01_QuickStart_01.png (264 bytes security) (deflated 8%)
adding: seqplots/www/help/img/01_QuickStart/01_QuickStart_02.png (264 bytes security) (deflated 7%)
adding: seqplots/www/help/img/01_QuickStart/01_QuickStart_03.png (264 bytes security) (deflated 6%)
adding: seqplots/www/help/img/01_QuickStart/01_QuickStart_04.png (264 bytes security) (deflated 4%)
adding: seqplots/www/help/img/01_QuickStart/01_QuickStart_05.png (264 bytes security) (deflated 3%)
adding: seqplots/www/help/img/01_QuickStart/01_QuickStart_06.png (264 bytes security) (deflated 6%)
adding: seqplots/www/help/img/01_QuickStart/01_QuickStart_07.png (264 bytes security) (deflated 3%)
adding: seqplots/www/help/img/01_QuickStart/01_QuickStart_08.png (264 bytes security) (deflated 2%)
adding: seqplots/www/help/img/01_QuickStart/01_QuickStart_09.png (264 bytes security) (deflated 5%)
adding: seqplots/www/help/img/01_QuickStart/01_QuickStart_10.png (264 bytes security) (deflated 4%)
adding: seqplots/www/help/img/01_QuickStart/01_QuickStart_11.png (264 bytes security) (deflated 5%)
adding: seqplots/www/help/img/01_QuickStart/01_QuickStart_12.png (264 bytes security) (deflated 1%)
adding: seqplots/www/help/img/03_01.png (264 bytes security) (deflated 3%)
adding: seqplots/www/help/img/03_01a.png (264 bytes security) (deflated 3%)
adding: seqplots/www/help/img/03_01b.png (264 bytes security) (deflated 9%)
adding: seqplots/www/help/img/03_02.png (264 bytes security) (deflated 2%)
adding: seqplots/www/help/img/03_03.png (264 bytes security) (deflated 1%)
adding: seqplots/www/help/img/03_04.png (264 bytes security) (deflated 5%)
adding: seqplots/www/help/img/05_01.png (264 bytes security) (deflated 3%)
adding: seqplots/www/help/img/05_02.png (264 bytes security) (deflated 5%)
adding: seqplots/www/help/img/05_03.png (264 bytes security) (deflated 3%)
adding: seqplots/www/help/img/05_04.png (264 bytes security) (deflated 10%)
adding: seqplots/www/help/img/06/ (304 bytes security) (stored 0%)
adding: seqplots/www/help/img/06/06_01.png (264 bytes security) (deflated 10%)
adding: seqplots/www/help/img/06/06_02.png (264 bytes security) (deflated 7%)
adding: seqplots/www/help/img/06/06_03.png (264 bytes security) (deflated 7%)
adding: seqplots/www/help/img/06/06_04.png (264 bytes security) (deflated 5%)
adding: seqplots/www/help/img/07_01.png (264 bytes security) (deflated 2%)
adding: seqplots/www/help/img/07_02.png (264 bytes security) (deflated 1%)
adding: seqplots/www/help/img/07_03.png (264 bytes security) (deflated 6%)
adding: seqplots/www/help/img/07_04.png (264 bytes security) (deflated 5%)
adding: seqplots/www/help/img/07_05_06.png (264 bytes security) (deflated 5%)
adding: seqplots/www/help/img/08_01.png (264 bytes security) (deflated 0%)
adding: seqplots/www/help/img/08_02.png (264 bytes security) (deflated 4%)
adding: seqplots/www/help/img/08_03.png (264 bytes security) (deflated 0%)
adding: seqplots/www/help/img/08_04.png (264 bytes security) (deflated 0%)
adding: seqplots/www/help/img/08_05.png (264 bytes security) (deflated 0%)
adding: seqplots/www/help/img/09_01.png (264 bytes security) (deflated 2%)
adding: seqplots/www/help/img/09_02.png (264 bytes security) (deflated 3%)
adding: seqplots/www/help/img/09_03.png (264 bytes security) (deflated 5%)
adding: seqplots/www/help/img/09_04.png (264 bytes security) (deflated 1%)
adding: seqplots/www/help/img/10_00.png (264 bytes security) (deflated 5%)
adding: seqplots/www/help/img/10_01.png (264 bytes security) (deflated 5%)
adding: seqplots/www/help/img/11_01.png (264 bytes security) (deflated 6%)
adding: seqplots/www/help/img/fav.ico (264 bytes security) (deflated 51%)
adding: seqplots/www/help/img/ico_full.png (264 bytes security) (deflated 2%)
adding: seqplots/www/help/img/ico_full_color.png (264 bytes security) (deflated 1%)
adding: seqplots/www/help/img/palettes.png (264 bytes security) (deflated 14%)
adding: seqplots/www/help/img/SeqPlots_fig1_web.png (264 bytes security) (deflated 0%)
adding: seqplots/www/help/index_files/ (304 bytes security) (stored 0%)
adding: seqplots/www/help/index_files/bootstrap-3.3.1/ (304 bytes security) (stored 0%)
adding: seqplots/www/help/index_files/bootstrap-3.3.1/css/ (304 bytes security) (stored 0%)
adding: seqplots/www/help/index_files/bootstrap-3.3.1/css/bootstrap.min.css (264 bytes security) (deflated 84%)
adding: seqplots/www/help/index_files/bootstrap-3.3.1/css/fonts/ (304 bytes security) (stored 0%)
adding: seqplots/www/help/index_files/bootstrap-3.3.1/css/fonts/Ubuntu.ttf (264 bytes security) (deflated 43%)
adding: seqplots/www/help/index_files/bootstrap-3.3.1/css/united.min.css (264 bytes security) (deflated 84%)
adding: seqplots/www/help/index_files/bootstrap-3.3.1/fonts/ (304 bytes security) (stored 0%)
adding: seqplots/www/help/index_files/bootstrap-3.3.1/fonts/glyphicons-halflings-regular.eot (264 bytes security) (deflated 0%)
adding: seqplots/www/help/index_files/bootstrap-3.3.1/fonts/glyphicons-halflings-regular.svg (264 bytes security) (deflated 73%)
adding: seqplots/www/help/index_files/bootstrap-3.3.1/fonts/glyphicons-halflings-regular.ttf (264 bytes security) (deflated 44%)
adding: seqplots/www/help/index_files/bootstrap-3.3.1/fonts/glyphicons-halflings-regular.woff (264 bytes security) (deflated 1%)
adding: seqplots/www/help/index_files/bootstrap-3.3.1/js/ (304 bytes security) (stored 0%)
adding: seqplots/www/help/index_files/bootstrap-3.3.1/js/bootstrap.min.js (264 bytes security) (deflated 74%)
adding: seqplots/www/help/index_files/bootstrap-3.3.1/shim/ (304 bytes security) (stored 0%)
adding: seqplots/www/help/index_files/bootstrap-3.3.1/shim/html5shiv.min.js (264 bytes security) (deflated 50%)
adding: seqplots/www/help/index_files/bootstrap-3.3.1/shim/respond.min.js (264 bytes security) (deflated 51%)
adding: seqplots/www/help/index_files/jquery-1.11.0/ (304 bytes security) (stored 0%)
adding: seqplots/www/help/index_files/jquery-1.11.0/jquery.min.js (264 bytes security) (deflated 66%)
adding: seqplots/www/help/Install_Docker.md (264 bytes security) (deflated 55%)
adding: seqplots/www/help/Install_OSX.md (264 bytes security) (deflated 51%)
adding: seqplots/www/help/Install_R.md (264 bytes security) (deflated 52%)
adding: seqplots/www/help/Install_server.md (264 bytes security) (deflated 54%)
adding: seqplots/www/help/Outputs.md (264 bytes security) (deflated 59%)
adding: seqplots/www/help/PlotSets.md (264 bytes security) (deflated 60%)
adding: seqplots/www/help/Plotting.md (264 bytes security) (deflated 62%)
adding: seqplots/www/help/QuickStart.md (264 bytes security) (deflated 59%)
adding: seqplots/www/help/References.md (264 bytes security) (deflated 52%)
adding: seqplots/www/help/SaveAndLoad.md (264 bytes security) (deflated 67%)
adding: seqplots/www/help/style.css (264 bytes security) (deflated 67%)
adding: seqplots/www/help/Terms.md (264 bytes security) (deflated 57%)
adding: seqplots/www/help/themes/ (304 bytes security) (stored 0%)
adding: seqplots/www/help/Versions.md (264 bytes security) (deflated 62%)
adding: seqplots/www/js/ (304 bytes security) (stored 0%)
adding: seqplots/www/js/actionbutton.js (264 bytes security) (deflated 58%)
adding: seqplots/www/js/afterHTMLgridrender.js (264 bytes security) (deflated 80%)
adding: seqplots/www/js/color.js (264 bytes security) (deflated 68%)
adding: seqplots/www/js/DataTables/ (304 bytes security) (stored 0%)
adding: seqplots/www/js/DataTables/dataTables.tableTools.min.js (264 bytes security) (deflated 71%)
adding: seqplots/www/js/DataTables/DT_bootstrap.js (264 bytes security) (deflated 67%)
adding: seqplots/www/js/DataTables/DT_filter.js (264 bytes security) (deflated 60%)
adding: seqplots/www/js/DataTables/jquery.dataTables.js (264 bytes security) (deflated 75%)
adding: seqplots/www/js/jquery.ba-throttle-debounce.js (264 bytes security) (deflated 70%)
adding: seqplots/www/js/jquery.cookie.js (264 bytes security) (deflated 57%)
adding: seqplots/www/js/jquery.lettering.js (264 bytes security) (deflated 49%)
adding: seqplots/www/js/js_addons.js (264 bytes security) (deflated 60%)
adding: seqplots/www/js/load_finished.js (264 bytes security) (deflated 37%)
adding: seqplots/www/js/modal_events.js (264 bytes security) (deflated 51%)
adding: seqplots/www/js/pdf.js (264 bytes security) (deflated 79%)
adding: seqplots/www/js/pdf.worker.js (264 bytes security) (deflated 83%)
adding: seqplots/www/js/tmpl.min.js (264 bytes security) (deflated 60%)
adding: seqplots/www/js/tutorial.js (264 bytes security) (deflated 73%)
adding: seqplots/www/outro.html (264 bytes security) (deflated 71%)
adding: seqplots/www/tutorial.html (264 bytes security) (deflated 72%)
adding: seqplots/www/upload/ (304 bytes security) (stored 0%)
adding: seqplots/www/upload/css/ (304 bytes security) (stored 0%)
adding: seqplots/www/upload/css/jquery.fileupload-ui-noscript.css (264 bytes security) (deflated 43%)
adding: seqplots/www/upload/css/jquery.fileupload-ui.css (264 bytes security) (deflated 54%)
adding: seqplots/www/upload/css/style.css (264 bytes security) (deflated 28%)
adding: seqplots/www/upload/img/ (304 bytes security) (stored 0%)
adding: seqplots/www/upload/img/loading.gif (264 bytes security) (deflated 6%)
adding: seqplots/www/upload/img/progressbar.gif (264 bytes security) (deflated 38%)
adding: seqplots/www/upload/js/ (304 bytes security) (stored 0%)
adding: seqplots/www/upload/js/cors/ (304 bytes security) (stored 0%)
adding: seqplots/www/upload/js/cors/jquery.postmessage-transport.js (264 bytes security) (deflated 70%)
adding: seqplots/www/upload/js/cors/jquery.xdr-transport.js (264 bytes security) (deflated 72%)
adding: seqplots/www/upload/js/jquery.fileupload-fp.js (264 bytes security) (deflated 72%)
adding: seqplots/www/upload/js/jquery.fileupload-ui.js (264 bytes security) (deflated 82%)
adding: seqplots/www/upload/js/jquery.fileupload-validate.js (264 bytes security) (deflated 68%)
adding: seqplots/www/upload/js/jquery.fileupload.js (264 bytes security) (deflated 79%)
adding: seqplots/www/upload/js/jquery.iframe-transport.js (264 bytes security) (deflated 73%)
adding: seqplots/www/upload/js/main.js (264 bytes security) (deflated 70%)
adding: seqplots/www/upload/js/md5.js (264 bytes security) (deflated 63%)
adding: seqplots/www/upload/js/vendor/ (304 bytes security) (stored 0%)
adding: seqplots/www/upload/js/vendor/jquery.ui.widget.js (264 bytes security) (deflated 69%)
adding: seqplots/www/upload/upload.html (264 bytes security) (deflated 75%)