mgsa 1.24.0
Sebastian Bauer
| Snapshot Date: 2017-08-15 17:17:57 -0400 (Tue, 15 Aug 2017) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_3_5/madman/Rpacks/mgsa | | Last Changed Rev: 129126 / Revision: 131943 | | Last Changed Date: 2017-04-24 15:25:24 -0400 (Mon, 24 Apr 2017) |
| malbec2 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | OK | OK | WARNINGS | |  |
| tokay2 | Windows Server 2012 R2 Standard / x64 | NotNeeded | OK | WARNINGS | OK | |
| veracruz2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | WARNINGS | [ OK ] | |
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### Running command:
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### rm -rf mgsa.buildbin-libdir && mkdir mgsa.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh mgsa_1.24.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R mgsa.buildbin-libdir
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>>>>>>>
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=mgsa.buildbin-libdir mgsa_1.24.0.tar.gz'
>>>>>>>
* installing *source* package ‘mgsa’ ...
configure: creating ./config.status
config.status: creating src/Makevars
** libs
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/local/include -I. -fopenmp -fPIC -Wall -g -O2 -c mgsa-core.c -o mgsa-core.o
mgsa-core.c:796:13: warning: unused function 'print_context' [-Wunused-function]
static void print_context(struct context *cn)
^
1 warning generated.
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/local/include -I. -fopenmp -fPIC -Wall -g -O2 -c mgsa.c -o mgsa.o
mgsa.c:52:10: warning: incompatible pointer types assigning to 'struct parameter_prior *' from 'char *' [-Wincompatible-pointer-types]
if (!(p = R_alloc(1,sizeof(*p))))
^ ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
mgsa.c:65:19: warning: incompatible pointer types assigning to 'double *' from 'char *' [-Wincompatible-pointer-types]
if (!(p->values = R_alloc(p->number_of_states,sizeof(p->values[0]))))
^ ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
mgsa.c:177:19: warning: incompatible pointer types assigning to 'int *' from 'char *' [-Wincompatible-pointer-types]
if (!(sum->dmap = R_alloc(number_of_discrete_values,sizeof(sum->dmap[0]))))
^ ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
mgsa.c:407:7: warning: incompatible pointer types assigning to 'int *' from 'char *' [-Wincompatible-pointer-types]
nas = R_alloc(las,sizeof(nas[0]));
^ ˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
4 warnings generated.
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -I/usr/local/include -I. -fopenmp -fPIC -Wall -g -O2 -c mt.c -o mt.o
clang -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o mgsa.so mgsa-core.o mgsa.o mt.o -fopenmp -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-3.5-bioc/meat/mgsa.buildbin-libdir/mgsa/libs
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (mgsa)
>>>>>>>
>>>>>>> FIXING LINKS FOR mgsa.buildbin-libdir/mgsa/libs//mgsa.so
>>>>>>>
install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/3.4/Resources/lib/libgcc_s.1.dylib" "mgsa.buildbin-libdir/mgsa/libs//mgsa.so"
install_name_tool -change "/usr/local/lib/libgfortran.3.dylib" "/Library/Frameworks/R.framework/Versions/3.4/Resources/lib/libgfortran.3.dylib" "mgsa.buildbin-libdir/mgsa/libs//mgsa.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/3.4/Resources/lib/libreadline.5.2.dylib" "mgsa.buildbin-libdir/mgsa/libs//mgsa.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/3.4/Resources/lib/libreadline.dylib" "mgsa.buildbin-libdir/mgsa/libs//mgsa.so"
install_name_tool -change "/usr/local/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/3.4/Resources/lib/libquadmath.0.dylib" "mgsa.buildbin-libdir/mgsa/libs//mgsa.so"