BioC 3.5: BUILD BIN report for limma on oaxaca

Package: limma

Version: 3.31.16

Command: rm -rf limma.buildbin-libdir && mkdir limma.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh limma_3.31.16.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R limma.buildbin-libdir

StartedAt: 2017-03-04 11:42:41 -0800 (Sat, 04 Mar 2017)

EndedAt: 2017-03-04 11:43:09 -0800 (Sat, 04 Mar 2017)

EllapsedTime: 28.0 seconds

RetCode: 0

Status:  OK

PackageFile: limma_3.31.16.tgz

PackageFileSize: 2.022 MiB

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### Running command:
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###   rm -rf limma.buildbin-libdir && mkdir limma.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh limma_3.31.16.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R limma.buildbin-libdir
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>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=limma.buildbin-libdir limma_3.31.16.tar.gz'
>>>>>>> 

* installing *source* package ‘limma’ ...
** libs
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG   -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include   -fPIC  -Wall -mtune=core2 -g -O2  -c init.c -o init.o
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG   -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include   -fPIC  -Wall -mtune=core2 -g -O2  -c normexp.c -o normexp.o
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG   -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include   -fPIC  -Wall -mtune=core2 -g -O2  -c weighted_lowess.c -o weighted_lowess.o
clang -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o limma.so init.o normexp.o weighted_lowess.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-3.5-bioc/meat/limma.buildbin-libdir/limma/libs
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (limma)


>>>>>>> 
>>>>>>> FIXING LINKS FOR limma.buildbin-libdir/limma/libs//limma.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/3.4/Resources/lib/libgcc_s.1.dylib" "limma.buildbin-libdir/limma/libs//limma.so"
install_name_tool -change "/usr/local/lib/libgfortran.3.dylib" "/Library/Frameworks/R.framework/Versions/3.4/Resources/lib/libgfortran.3.dylib" "limma.buildbin-libdir/limma/libs//limma.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/3.4/Resources/lib/libreadline.5.2.dylib" "limma.buildbin-libdir/limma/libs//limma.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/3.4/Resources/lib/libreadline.dylib" "limma.buildbin-libdir/limma/libs//limma.so"
install_name_tool -change "/usr/local/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/3.4/Resources/lib/libquadmath.0.dylib" "limma.buildbin-libdir/limma/libs//limma.so"