BioC 3.5: CHECK report for funtooNorm on malbec2

Package: funtooNorm

Version: 1.0.0

Command: /home/biocbuild/bbs-3.5-bioc/R/bin/R CMD check --no-vignettes --timings funtooNorm_1.0.0.tar.gz

StartedAt: 2017-08-15 23:08:43 -0400 (Tue, 15 Aug 2017)

EndedAt: 2017-08-15 23:14:04 -0400 (Tue, 15 Aug 2017)

EllapsedTime: 320.8 seconds

RetCode: 0

Status:  OK

CheckDir: funtooNorm.Rcheck

Warnings: 0

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### Running command:
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###   /home/biocbuild/bbs-3.5-bioc/R/bin/R CMD check --no-vignettes --timings funtooNorm_1.0.0.tar.gz
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* using log directory ‘/home/biocbuild/bbs-3.5-bioc/meat/funtooNorm.Rcheck’
* using R version 3.4.1 (2017-06-30)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘funtooNorm/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘funtooNorm’ version ‘1.0.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘funtooNorm’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking R/sysdata.rda ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU or elapsed time > 5s
                      user system elapsed
plotValidationGraph 21.860  0.116  21.987
funtooNorm          18.232  0.452  18.701
getNormBeta         17.840  0.336  18.182
getNormM            17.708  0.232  17.951
getSnpM             15.940  0.424  16.372
fromRGChannelSet    12.304  1.780  15.367
getRawBeta           5.932  0.172   6.111
getGRanges           5.584  0.160   5.762
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK

* installing *source* package ‘funtooNorm’ ...
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (funtooNorm)

name	user	system	elapsed
SampleSet-class	0.004	0.000	0.002
agreement	0.000	0.000	0.002
fromRGChannelSet	12.304	1.780	15.367
funtooNorm	18.232	0.452	18.701
getGRanges	5.584	0.160	5.762
getNormBeta	17.840	0.336	18.182
getNormM	17.708	0.232	17.951
getRawBeta	5.932	0.172	6.111
getSnpM	15.940	0.424	16.372
plotValidationGraph	21.860	0.116	21.987
show-SampleSet-method	4.388	0.032	4.420