SpacePAC 1.14.0
Gregory Ryslik
| Snapshot Date: 2017-08-15 17:17:57 -0400 (Tue, 15 Aug 2017) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_3_5/madman/Rpacks/SpacePAC | | Last Changed Rev: 129126 / Revision: 131943 | | Last Changed Date: 2017-04-24 15:25:24 -0400 (Mon, 24 Apr 2017) |
| malbec2 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | OK | OK | OK | |  |
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | [ OK ] | OK | |
| veracruz2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | |
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### Running command:
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### rm -rf SpacePAC.buildbin-libdir SpacePAC.Rcheck && mkdir SpacePAC.buildbin-libdir SpacePAC.Rcheck && C:\Users\biocbuild\bbs-3.5-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=SpacePAC.buildbin-libdir SpacePAC_1.14.0.tar.gz >SpacePAC.Rcheck\00install.out 2>&1 && cp SpacePAC.Rcheck\00install.out SpacePAC-install.out && C:\Users\biocbuild\bbs-3.5-bioc\R\bin\R.exe CMD check --library=SpacePAC.buildbin-libdir --install="check:SpacePAC-install.out" --force-multiarch --no-vignettes --timings SpacePAC_1.14.0.tar.gz
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* using log directory 'C:/Users/biocbuild/bbs-3.5-bioc/meat/SpacePAC.Rcheck'
* using R version 3.4.1 (2017-06-30)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'SpacePAC/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'SpacePAC' version '1.14.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'SpacePAC' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Malformed Title field: should not end in a period.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... NOTE
Package in Depends field not imported from: 'iPAC'
These packages need to be imported from (in the NAMESPACE file)
for when this namespace is loaded but not attached.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
SpaceClust: no visible global function definition for 'flush.console'
SpaceClust: no visible global function definition for 'ppois'
create.Distance.Matrix: no visible global function definition for
'dist'
create.Result.Matrix: no visible global function definition for
'p.adjust'
get.Avg.Neighbor.Distance: no visible global function definition for
'dist'
get.Local.Radius.Results: no visible global function definition for
'sd'
make.3D.Sphere: no visible global function definition for 'rgl.open'
make.3D.Sphere: no visible global function definition for 'rgl.bg'
make.3D.Sphere: no visible global function definition for 'plot3d'
make.3D.Sphere: no visible global function definition for 'decorate3d'
make.3D.Sphere: no visible global function definition for 'spheres3d'
Undefined global functions or variables:
decorate3d dist flush.console p.adjust plot3d ppois rgl.bg rgl.open
sd spheres3d
Consider adding
importFrom("stats", "dist", "p.adjust", "ppois", "sd")
importFrom("utils", "flush.console")
to your NAMESPACE file.
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
Examples with CPU or elapsed time > 5s
user system elapsed
SpaceClust 47.67 1.75 49.92
** running examples for arch 'x64' ... OK
Examples with CPU or elapsed time > 5s
user system elapsed
SpaceClust 51.37 1.57 53.38
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
** running tests for arch 'i386' ...
Running 'runTests.R'
OK
** running tests for arch 'x64' ...
Running 'runTests.R'
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 3 NOTEs
See
'C:/Users/biocbuild/bbs-3.5-bioc/meat/SpacePAC.Rcheck/00check.log'
for details.
install for i386
* installing *source* package 'SpacePAC' ...
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
install for x64
* installing *source* package 'SpacePAC' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'SpacePAC' as SpacePAC_1.14.0.zip
* DONE (SpacePAC)