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BioC 3.5: INSTALL report for SomaticSignatures on tokay2

This page was generated on 2017-08-16 13:22:57 -0400 (Wed, 16 Aug 2017).

Package 1246/1382HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
SomaticSignatures 2.12.1
Julian Gehring
Snapshot Date: 2017-08-15 17:17:57 -0400 (Tue, 15 Aug 2017)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_3_5/madman/Rpacks/SomaticSignatures
Last Changed Rev: 129798 / Revision: 131943
Last Changed Date: 2017-05-22 15:13:46 -0400 (Mon, 22 May 2017)
malbec2 Linux (Ubuntu 16.04.1 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64 [ OK ] OK  OK  OK UNNEEDED, same version exists in internal repository
veracruz2 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: SomaticSignatures
Version: 2.12.1
Command: rm -rf SomaticSignatures.buildbin-libdir && mkdir SomaticSignatures.buildbin-libdir && C:\cygwin\bin\curl.exe -O http://172.29.0.4/BBS/3.5/bioc/src/contrib/SomaticSignatures_2.12.1.tar.gz && C:\Users\biocbuild\bbs-3.5-bioc\R\bin\R.exe CMD INSTALL --build --library=SomaticSignatures.buildbin-libdir --merge-multiarch SomaticSignatures_2.12.1.tar.gz && C:\Users\biocbuild\bbs-3.5-bioc\R\bin\R.exe CMD INSTALL SomaticSignatures_2.12.1.zip && rm SomaticSignatures_2.12.1.tar.gz SomaticSignatures_2.12.1.zip
StartedAt: 2017-08-15 18:40:44 -0400 (Tue, 15 Aug 2017)
EndedAt: 2017-08-15 18:42:51 -0400 (Tue, 15 Aug 2017)
EllapsedTime: 127.5 seconds
RetCode: 0
Status:  OK  

Command output

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###
### Running command:
###
###   rm -rf SomaticSignatures.buildbin-libdir && mkdir SomaticSignatures.buildbin-libdir  && C:\cygwin\bin\curl.exe -O http://172.29.0.4/BBS/3.5/bioc/src/contrib/SomaticSignatures_2.12.1.tar.gz && C:\Users\biocbuild\bbs-3.5-bioc\R\bin\R.exe CMD INSTALL --build --library=SomaticSignatures.buildbin-libdir --merge-multiarch SomaticSignatures_2.12.1.tar.gz && C:\Users\biocbuild\bbs-3.5-bioc\R\bin\R.exe CMD INSTALL SomaticSignatures_2.12.1.zip  && rm SomaticSignatures_2.12.1.tar.gz SomaticSignatures_2.12.1.zip
###
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  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
100  127k  100  127k    0     0  6049k      0 --:--:-- --:--:-- --:--:-- 6695k

install for i386

* installing *source* package 'SomaticSignatures' ...
** R
** data
** inst
** byte-compile and prepare package for lazy loading
No methods found in "RSQLite" for requests: dbGetQuery
** help
*** installing help indices
** building package indices
** installing vignettes
   'SomaticSignatures-vignette.Rhtml' 
** testing if installed package can be loaded
No methods found in "RSQLite" for requests: dbGetQuery

install for x64

* installing *source* package 'SomaticSignatures' ...
** testing if installed package can be loaded
No methods found in "RSQLite" for requests: dbGetQuery
* MD5 sums
packaged installation of 'SomaticSignatures' as SomaticSignatures_2.12.1.zip
* DONE (SomaticSignatures)
* installing to library 'C:/Users/biocbuild/bbs-3.5-bioc/R/library'
package 'SomaticSignatures' successfully unpacked and MD5 sums checked