BioC 3.5: CHECK report for RTNduals on malbec2

Package: RTNduals

Version: 1.0.3

Command: /home/biocbuild/bbs-3.5-bioc/R/bin/R CMD check --no-vignettes --timings RTNduals_1.0.3.tar.gz

StartedAt: 2017-08-16 02:03:50 -0400 (Wed, 16 Aug 2017)

EndedAt: 2017-08-16 02:06:13 -0400 (Wed, 16 Aug 2017)

EllapsedTime: 143.7 seconds

RetCode: 0

Status:  OK

CheckDir: RTNduals.Rcheck

Warnings: 0

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### Running command:
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###   /home/biocbuild/bbs-3.5-bioc/R/bin/R CMD check --no-vignettes --timings RTNduals_1.0.3.tar.gz
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* using log directory ‘/home/biocbuild/bbs-3.5-bioc/meat/RTNduals.Rcheck’
* using R version 3.4.1 (2017-06-30)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘RTNduals/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘RTNduals’ version ‘1.0.3’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘RTNduals’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU or elapsed time > 5s
                        user system elapsed
mbrAssociation-methods 7.264  0.060   7.337
mbrDpiFilter-methods   5.708  0.060   5.771
mbrDuals-methods       5.592  0.012   5.608
mbrPlotDuals           5.544  0.040   5.587
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘runTests.R’
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK

* installing *source* package ‘RTNduals’ ...
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (RTNduals)

name	user	system	elapsed
mbrAssociation-methods	7.264	0.060	7.337
mbrBootstrap-methods	4.828	0.040	4.870
mbrDpiFilter-methods	5.708	0.060	5.771
mbrDuals-methods	5.592	0.012	5.608
mbrGet-methods	2.132	0.016	2.149
mbrPermutation-methods	4.064	0.004	4.070
mbrPlotDuals	5.544	0.040	5.587
mbrPreprocess-methods	1.820	0.004	1.822
tni2mbrPreprocess-methods	0.896	0.004	0.901