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BioC 3.5: BUILD BIN report for R453Plus1Toolbox on tokay2

This page was generated on 2017-08-16 13:20:47 -0400 (Wed, 16 Aug 2017).

Package 1053/1382HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
R453Plus1Toolbox 1.26.0
Hans-Ulrich Klein
Snapshot Date: 2017-08-15 17:17:57 -0400 (Tue, 15 Aug 2017)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_3_5/madman/Rpacks/R453Plus1Toolbox
Last Changed Rev: 129126 / Revision: 131943
Last Changed Date: 2017-04-24 15:25:24 -0400 (Mon, 24 Apr 2017)
malbec2 Linux (Ubuntu 16.04.1 LTS) / x86_64  NotNeeded  OK  OK UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64  NotNeeded  OK  OK [ OK ]UNNEEDED, same version exists in internal repository
veracruz2 OS X 10.11.6 El Capitan / x86_64  NotNeeded  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: R453Plus1Toolbox
Version: 1.26.0
Command: cd R453Plus1Toolbox.buildbin-libdir/R453Plus1Toolbox && zip -r ../../R453Plus1Toolbox_1.26.0.zip . & cd ../..
StartedAt: 2017-08-16 04:47:36 -0400 (Wed, 16 Aug 2017)
EndedAt: 2017-08-16 04:48:09 -0400 (Wed, 16 Aug 2017)
EllapsedTime: 33.0 seconds
RetCode: 0
Status:  OK  
PackageFile: R453Plus1Toolbox_1.26.0.zip
PackageFileSize: 2.979 MiB

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   cd R453Plus1Toolbox.buildbin-libdir/R453Plus1Toolbox && zip -r ../../R453Plus1Toolbox_1.26.0.zip . & cd ../..
###
##############################################################################
##############################################################################


  adding: CITATION (264 bytes security) (deflated 40%)
  adding: data/ (304 bytes security) (stored 0%)
  adding: data/avaSetExample.RData (264 bytes security) (deflated 3%)
  adding: data/avaSetFiltered.RData (264 bytes security) (deflated 3%)
  adding: data/avaSetFiltered_annot.RData (264 bytes security) (stored 0%)
  adding: data/breakpoints.RData (264 bytes security) (stored 0%)
  adding: data/captureArray.RData (264 bytes security) (stored 0%)
  adding: data/mapperSetExample.RData (264 bytes security) (deflated 1%)
  adding: data/plotVariantsExample.RData (264 bytes security) (stored 0%)
  adding: DESCRIPTION (264 bytes security) (deflated 43%)
  adding: doc/ (304 bytes security) (stored 0%)
  adding: doc/index.html (264 bytes security) (deflated 58%)
  adding: doc/vignette.pdf (264 bytes security) (deflated 20%)
  adding: doc/vignette.R (264 bytes security) (deflated 82%)
  adding: doc/vignette.Rnw (264 bytes security) (deflated 71%)
  adding: extdata/ (304 bytes security) (stored 0%)
  adding: extdata/AVASet/ (304 bytes security) (stored 0%)
  adding: extdata/AVASet/Amplicons/ (304 bytes security) (stored 0%)
  adding: extdata/AVASet/Amplicons/ProjectDef/ (304 bytes security) (stored 0%)
  adding: extdata/AVASet/Amplicons/ProjectDef/ampliconsProject.txt (264 bytes security) (deflated 73%)
  adding: extdata/AVASet/Amplicons/Results/ (304 bytes security) (stored 0%)
  adding: extdata/AVASet/Amplicons/Results/Align/ (304 bytes security) (stored 0%)
  adding: extdata/AVASet/Amplicons/Results/Align/I116/ (304 bytes security) (stored 0%)
  adding: extdata/AVASet/Amplicons/Results/Align/I116/I36/ (304 bytes security) (stored 0%)
  adding: extdata/AVASet/Amplicons/Results/Align/I116/I36/I116_vs_I36.ampIds.txt (264 bytes security) (deflated 4%)
  adding: extdata/AVASet/Amplicons/Results/Align/I116/I37/ (304 bytes security) (stored 0%)
  adding: extdata/AVASet/Amplicons/Results/Align/I116/I37/I116_vs_I37.ampIds.txt (264 bytes security) (deflated 4%)
  adding: extdata/AVASet/Amplicons/Results/Align/I116/I40/ (304 bytes security) (stored 0%)
  adding: extdata/AVASet/Amplicons/Results/Align/I116/I40/I116_vs_I40.ampIds.txt (264 bytes security) (deflated 4%)
  adding: extdata/AVASet/Amplicons/Results/Align/I116/I42/ (304 bytes security) (stored 0%)
  adding: extdata/AVASet/Amplicons/Results/Align/I116/I42/I116_vs_I42.ampIds.txt (264 bytes security) (deflated 4%)
  adding: extdata/AVASet/Amplicons/Results/Align/I117/ (304 bytes security) (stored 0%)
  adding: extdata/AVASet/Amplicons/Results/Align/I117/I36/ (304 bytes security) (stored 0%)
  adding: extdata/AVASet/Amplicons/Results/Align/I117/I36/I117_vs_I36.ampIds.txt (264 bytes security) (deflated 4%)
  adding: extdata/AVASet/Amplicons/Results/Align/I117/I37/ (304 bytes security) (stored 0%)
  adding: extdata/AVASet/Amplicons/Results/Align/I117/I37/I117_vs_I37.ampIds.txt (264 bytes security) (deflated 4%)
  adding: extdata/AVASet/Amplicons/Results/Align/I117/I40/ (304 bytes security) (stored 0%)
  adding: extdata/AVASet/Amplicons/Results/Align/I117/I40/I117_vs_I40.ampIds.txt (264 bytes security) (deflated 4%)
  adding: extdata/AVASet/Amplicons/Results/Align/I117/I42/ (304 bytes security) (stored 0%)
  adding: extdata/AVASet/Amplicons/Results/Align/I117/I42/I117_vs_I42.ampIds.txt (264 bytes security) (deflated 4%)
  adding: extdata/AVASet/Amplicons/Results/Align/I118/ (304 bytes security) (stored 0%)
  adding: extdata/AVASet/Amplicons/Results/Align/I118/I36/ (304 bytes security) (stored 0%)
  adding: extdata/AVASet/Amplicons/Results/Align/I118/I36/I118_vs_I36.ampIds.txt (264 bytes security) (deflated 4%)
  adding: extdata/AVASet/Amplicons/Results/Align/I118/I37/ (304 bytes security) (stored 0%)
  adding: extdata/AVASet/Amplicons/Results/Align/I118/I37/I118_vs_I37.ampIds.txt (264 bytes security) (deflated 4%)
  adding: extdata/AVASet/Amplicons/Results/Align/I118/I40/ (304 bytes security) (stored 0%)
  adding: extdata/AVASet/Amplicons/Results/Align/I118/I40/I118_vs_I40.ampIds.txt (264 bytes security) (deflated 4%)
  adding: extdata/AVASet/Amplicons/Results/Align/I118/I42/ (304 bytes security) (stored 0%)
  adding: extdata/AVASet/Amplicons/Results/Align/I118/I42/I118_vs_I42.ampIds.txt (264 bytes security) (deflated 4%)
  adding: extdata/AVASet/Amplicons/Results/Align/I9644/ (304 bytes security) (stored 0%)
  adding: extdata/AVASet/Amplicons/Results/Align/I9644/I36/ (304 bytes security) (stored 0%)
  adding: extdata/AVASet/Amplicons/Results/Align/I9644/I36/I9644_vs_I36.ampIds.txt (264 bytes security) (deflated 6%)
  adding: extdata/AVASet/Amplicons/Results/Align/I9644/I37/ (304 bytes security) (stored 0%)
  adding: extdata/AVASet/Amplicons/Results/Align/I9644/I37/I9644_vs_I37.ampIds.txt (264 bytes security) (deflated 4%)
  adding: extdata/AVASet/Amplicons/Results/Align/I9644/I40/ (304 bytes security) (stored 0%)
  adding: extdata/AVASet/Amplicons/Results/Align/I9644/I40/I9644_vs_I40.ampIds.txt (264 bytes security) (deflated 6%)
  adding: extdata/AVASet/Amplicons/Results/Align/I9644/I42/ (304 bytes security) (stored 0%)
  adding: extdata/AVASet/Amplicons/Results/Align/I9644/I42/I9644_vs_I42.ampIds.txt (264 bytes security) (deflated 4%)
  adding: extdata/AVASet/Amplicons/Results/Align/I9645/ (304 bytes security) (stored 0%)
  adding: extdata/AVASet/Amplicons/Results/Align/I9645/I36/ (304 bytes security) (stored 0%)
  adding: extdata/AVASet/Amplicons/Results/Align/I9645/I36/I9645_vs_I36.ampIds.txt (264 bytes security) (deflated 4%)
  adding: extdata/AVASet/Amplicons/Results/Align/I9645/I37/ (304 bytes security) (stored 0%)
  adding: extdata/AVASet/Amplicons/Results/Align/I9645/I37/I9645_vs_I37.ampIds.txt (264 bytes security) (deflated 6%)
  adding: extdata/AVASet/Amplicons/Results/Align/I9645/I40/ (304 bytes security) (stored 0%)
  adding: extdata/AVASet/Amplicons/Results/Align/I9645/I40/I9645_vs_I40.ampIds.txt (264 bytes security) (deflated 4%)
  adding: extdata/AVASet/Amplicons/Results/Align/I9645/I42/ (304 bytes security) (stored 0%)
  adding: extdata/AVASet/Amplicons/Results/Align/I9645/I42/I9645_vs_I42.ampIds.txt (264 bytes security) (deflated 4%)
  adding: extdata/AVASet/Amplicons/Results/Align/I9646/ (304 bytes security) (stored 0%)
  adding: extdata/AVASet/Amplicons/Results/Align/I9646/I36/ (304 bytes security) (stored 0%)
  adding: extdata/AVASet/Amplicons/Results/Align/I9646/I36/I9646_vs_I36.ampIds.txt (264 bytes security) (deflated 4%)
  adding: extdata/AVASet/Amplicons/Results/Align/I9646/I37/ (304 bytes security) (stored 0%)
  adding: extdata/AVASet/Amplicons/Results/Align/I9646/I37/I9646_vs_I37.ampIds.txt (264 bytes security) (deflated 4%)
  adding: extdata/AVASet/Amplicons/Results/Align/I9646/I37/I9646_vs_I37.readAlign.txt (264 bytes security) (deflated 97%)
  adding: extdata/AVASet/Amplicons/Results/Align/I9646/I40/ (304 bytes security) (stored 0%)
  adding: extdata/AVASet/Amplicons/Results/Align/I9646/I40/I9646_vs_I40.ampIds.txt (264 bytes security) (deflated 4%)
  adding: extdata/AVASet/Amplicons/Results/Align/I9646/I42/ (304 bytes security) (stored 0%)
  adding: extdata/AVASet/Amplicons/Results/Align/I9646/I42/I9646_vs_I42.ampIds.txt (264 bytes security) (deflated 4%)
  adding: extdata/AVASet/Amplicons/Results/Variants/ (304 bytes security) (stored 0%)
  adding: extdata/AVASet/Amplicons/Results/Variants/currentVariantDefs.txt (264 bytes security) (deflated 77%)
  adding: extdata/AVASet/Amplicons/Results/Variants/I116/ (304 bytes security) (stored 0%)
  adding: extdata/AVASet/Amplicons/Results/Variants/I116/I116xI36detectedVariants.txt (264 bytes security) (deflated 83%)
  adding: extdata/AVASet/Amplicons/Results/Variants/I116/I116xI37detectedVariants.txt (264 bytes security) (deflated 83%)
  adding: extdata/AVASet/Amplicons/Results/Variants/I116/I116xI40detectedVariants.txt (264 bytes security) (deflated 83%)
  adding: extdata/AVASet/Amplicons/Results/Variants/I116/I116xI42detectedVariants.txt (264 bytes security) (deflated 83%)
  adding: extdata/AVASet/Amplicons/Results/Variants/I117/ (304 bytes security) (stored 0%)
  adding: extdata/AVASet/Amplicons/Results/Variants/I117/I117xI36detectedVariants.txt (264 bytes security) (deflated 84%)
  adding: extdata/AVASet/Amplicons/Results/Variants/I117/I117xI37detectedVariants.txt (264 bytes security) (deflated 83%)
  adding: extdata/AVASet/Amplicons/Results/Variants/I117/I117xI40detectedVariants.txt (264 bytes security) (deflated 83%)
  adding: extdata/AVASet/Amplicons/Results/Variants/I117/I117xI42detectedVariants.txt (264 bytes security) (deflated 82%)
  adding: extdata/AVASet/Amplicons/Results/Variants/I118/ (304 bytes security) (stored 0%)
  adding: extdata/AVASet/Amplicons/Results/Variants/I118/I118xI36detectedVariants.txt (264 bytes security) (deflated 83%)
  adding: extdata/AVASet/Amplicons/Results/Variants/I118/I118xI37detectedVariants.txt (264 bytes security) (deflated 83%)
  adding: extdata/AVASet/Amplicons/Results/Variants/I118/I118xI40detectedVariants.txt (264 bytes security) (deflated 82%)
  adding: extdata/AVASet/Amplicons/Results/Variants/I118/I118xI42detectedVariants.txt (264 bytes security) (deflated 82%)
  adding: extdata/AVASet/Amplicons/Results/Variants/I9644/ (304 bytes security) (stored 0%)
  adding: extdata/AVASet/Amplicons/Results/Variants/I9644/I9644xI36detectedVariants.txt (264 bytes security) (deflated 86%)
  adding: extdata/AVASet/Amplicons/Results/Variants/I9644/I9644xI37detectedVariants.txt (264 bytes security) (deflated 85%)
  adding: extdata/AVASet/Amplicons/Results/Variants/I9644/I9644xI40detectedVariants.txt (264 bytes security) (deflated 85%)
  adding: extdata/AVASet/Amplicons/Results/Variants/I9644/I9644xI42detectedVariants.txt (264 bytes security) (deflated 85%)
  adding: extdata/AVASet/Amplicons/Results/Variants/I9645/ (304 bytes security) (stored 0%)
  adding: extdata/AVASet/Amplicons/Results/Variants/I9645/I9645xI36detectedVariants.txt (264 bytes security) (deflated 85%)
  adding: extdata/AVASet/Amplicons/Results/Variants/I9645/I9645xI37detectedVariants.txt (264 bytes security) (deflated 85%)
  adding: extdata/AVASet/Amplicons/Results/Variants/I9645/I9645xI40detectedVariants.txt (264 bytes security) (deflated 85%)
  adding: extdata/AVASet/Amplicons/Results/Variants/I9645/I9645xI42detectedVariants.txt (264 bytes security) (deflated 85%)
  adding: extdata/AVASet/Amplicons/Results/Variants/I9646/ (304 bytes security) (stored 0%)
  adding: extdata/AVASet/Amplicons/Results/Variants/I9646/I9646xI36detectedVariants.txt (264 bytes security) (deflated 86%)
  adding: extdata/AVASet/Amplicons/Results/Variants/I9646/I9646xI37detectedVariants.txt (264 bytes security) (deflated 85%)
  adding: extdata/AVASet/Amplicons/Results/Variants/I9646/I9646xI40detectedVariants.txt (264 bytes security) (deflated 85%)
  adding: extdata/AVASet/Amplicons/Results/Variants/I9646/I9646xI42detectedVariants.txt (264 bytes security) (deflated 85%)
  adding: extdata/AVASet_doAmplicon/ (304 bytes security) (stored 0%)
  adding: extdata/AVASet_doAmplicon/amp.csv (264 bytes security) (deflated 42%)
  adding: extdata/AVASet_doAmplicon/reference.csv (264 bytes security) (deflated 63%)
  adding: extdata/AVASet_doAmplicon/sample.csv (264 bytes security) (deflated 58%)
  adding: extdata/AVASet_doAmplicon/variant.csv (264 bytes security) (deflated 82%)
  adding: extdata/AVASet_doAmplicon/variantHits.csv (264 bytes security) (deflated 92%)
  adding: extdata/AVAVarFreqExport/ (304 bytes security) (stored 0%)
  adding: extdata/AVAVarFreqExport/AVAVarFreqExport.xls (264 bytes security) (deflated 81%)
  adding: extdata/MapperSet/ (304 bytes security) (stored 0%)
  adding: extdata/MapperSet/N01/ (304 bytes security) (stored 0%)
  adding: extdata/MapperSet/N01/mapping/ (304 bytes security) (stored 0%)
  adding: extdata/MapperSet/N01/mapping/454HCDiffs.txt (264 bytes security) (deflated 85%)
  adding: extdata/MapperSet/N01/mapping/454NewblerMetrics.txt (264 bytes security) (deflated 77%)
  adding: extdata/MapperSet/N03/ (304 bytes security) (stored 0%)
  adding: extdata/MapperSet/N03/mapping/ (304 bytes security) (stored 0%)
  adding: extdata/MapperSet/N03/mapping/454HCDiffs.txt (264 bytes security) (deflated 85%)
  adding: extdata/MapperSet/N03/mapping/454NewblerMetrics.txt (264 bytes security) (deflated 77%)
  adding: extdata/MapperSet/N04/ (304 bytes security) (stored 0%)
  adding: extdata/MapperSet/N04/mapping/ (304 bytes security) (stored 0%)
  adding: extdata/MapperSet/N04/mapping/454HCDiffs.txt (264 bytes security) (deflated 85%)
  adding: extdata/MapperSet/N04/mapping/454NewblerMetrics.txt (264 bytes security) (deflated 77%)
  adding: extdata/qualityReport.Rnw (264 bytes security) (deflated 79%)
  adding: extdata/SFF/ (304 bytes security) (stored 0%)
  adding: extdata/SFF/example.sff (264 bytes security) (deflated 70%)
  adding: extdata/SVDetection/ (304 bytes security) (stored 0%)
  adding: extdata/SVDetection/bam/ (304 bytes security) (stored 0%)
  adding: extdata/SVDetection/bam/N01.bam (264 bytes security) (deflated 0%)
  adding: extdata/SVDetection/chip/ (304 bytes security) (stored 0%)
  adding: extdata/SVDetection/chip/CaptureArray_hg19.bed (264 bytes security) (deflated 67%)
  adding: extdata/SVDetection/R_2009_07_30/ (304 bytes security) (stored 0%)
  adding: extdata/SVDetection/R_2009_07_30/D_2009_07_31/ (304 bytes security) (stored 0%)
  adding: extdata/SVDetection/R_2009_07_30/D_2009_07_31/1.CAT.454Reads.fna (264 bytes security) (deflated 69%)
  adding: extdata/SVDetection/R_2009_07_30/D_2009_07_31/1.CAT.454Reads.qual (264 bytes security) (deflated 82%)
  adding: extdata/SVDetection/R_2009_07_30/D_2009_07_31/1.TCA.454Reads.fna (264 bytes security) (deflated 69%)
  adding: extdata/SVDetection/R_2009_07_30/D_2009_07_31/1.TCA.454Reads.qual (264 bytes security) (deflated 83%)
  adding: extdata/SVDetection/R_2009_07_30/D_2009_07_31/2.CAT.454Reads.fna (264 bytes security) (deflated 69%)
  adding: extdata/SVDetection/R_2009_07_30/D_2009_07_31/2.CAT.454Reads.qual (264 bytes security) (deflated 81%)
  adding: extdata/SVDetection/R_2009_07_30/D_2009_07_31/2.TCA.454Reads.fna (264 bytes security) (deflated 69%)
  adding: extdata/SVDetection/R_2009_07_30/D_2009_07_31/2.TCA.454Reads.qual (264 bytes security) (deflated 82%)
  adding: extdata/SVDetection/R_2009_07_30/D_2009_07_31/454BaseCallerMetrics.csv (264 bytes security) (deflated 53%)
  adding: extdata/SVDetection/R_2009_07_30/D_2009_07_31/454BaseCallerMetrics.txt (264 bytes security) (deflated 82%)
  adding: extdata/SVDetection/R_2009_07_30/D_2009_07_31/454DataProcessingDir.xml (264 bytes security) (deflated 35%)
  adding: extdata/SVDetection/R_2009_07_30/D_2009_07_31/454QualityFilterMetrics.csv (264 bytes security) (deflated 58%)
  adding: extdata/SVDetection/R_2009_07_30/D_2009_07_31/454QualityFilterMetrics.txt (264 bytes security) (deflated 71%)
  adding: extdata/SVDetection/R_2009_07_30/D_2009_07_31/454RuntimeMetricsAll.csv (264 bytes security) (deflated 69%)
  adding: extdata/SVDetection/R_2009_07_30/D_2009_07_31/454RuntimeMetricsAll.txt (264 bytes security) (deflated 81%)
  adding: extdata/SVDetection/R_2009_07_30/D_2009_07_31/dataRunParams.xml (264 bytes security) (deflated 81%)
  adding: extdata/SVDetection/R_2009_07_30/D_2009_07_31/gsRunProcessor.log (264 bytes security) (deflated 89%)
  adding: help/ (304 bytes security) (stored 0%)
  adding: help/aliases.rds (264 bytes security) (stored 0%)
  adding: help/AnIndex (264 bytes security) (deflated 87%)
  adding: help/paths.rds (264 bytes security) (stored 0%)
  adding: help/R453Plus1Toolbox.rdb (264 bytes security) (deflated 1%)
  adding: help/R453Plus1Toolbox.rdx (264 bytes security) (stored 0%)
  adding: html/ (304 bytes security) (stored 0%)
  adding: html/00Index.html (264 bytes security) (deflated 89%)
  adding: html/R.css (264 bytes security) (deflated 75%)
  adding: INDEX (264 bytes security) (deflated 66%)
  adding: javascript/ (304 bytes security) (stored 0%)
  adding: javascript/sorttable.js (264 bytes security) (deflated 70%)
  adding: libs/ (304 bytes security) (stored 0%)
  adding: libs/i386/ (304 bytes security) (stored 0%)
  adding: libs/i386/R453Plus1Toolbox.dll (264 bytes security) (deflated 57%)
  adding: libs/x64/ (304 bytes security) (stored 0%)
  adding: libs/x64/R453Plus1Toolbox.dll (264 bytes security) (deflated 59%)
  adding: MD5 (264 bytes security) (deflated 65%)
  adding: Meta/ (304 bytes security) (stored 0%)
  adding: Meta/data.rds (264 bytes security) (stored 0%)
  adding: Meta/features.rds (264 bytes security) (stored 0%)
  adding: Meta/hsearch.rds (264 bytes security) (stored 0%)
  adding: Meta/links.rds (264 bytes security) (stored 0%)
  adding: Meta/nsInfo.rds (264 bytes security) (stored 0%)
  adding: Meta/package.rds (264 bytes security) (stored 0%)
  adding: Meta/Rd.rds (264 bytes security) (stored 0%)
  adding: Meta/vignette.rds (264 bytes security) (stored 0%)
  adding: NAMESPACE (264 bytes security) (deflated 65%)
  adding: NEWS.Rd (264 bytes security) (deflated 57%)
  adding: R/ (304 bytes security) (stored 0%)
  adding: R/R453Plus1Toolbox (264 bytes security) (deflated 41%)
  adding: R/R453Plus1Toolbox.rdb (264 bytes security) (deflated 36%)
  adding: R/R453Plus1Toolbox.rdx (264 bytes security) (deflated 6%)