Pviz 1.10.0
Renan Sauteraud
| Snapshot Date: 2017-08-15 17:17:57 -0400 (Tue, 15 Aug 2017) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_3_5/madman/Rpacks/Pviz | | Last Changed Rev: 129126 / Revision: 131943 | | Last Changed Date: 2017-04-24 15:25:24 -0400 (Mon, 24 Apr 2017) |
| malbec2 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | OK | OK | OK | |  |
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | |
| veracruz2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | [ OK ] | OK | |
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### Running command:
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### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --no-vignettes --timings Pviz_1.10.0.tar.gz
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* using log directory ‘/Users/biocbuild/bbs-3.5-bioc/meat/Pviz.Rcheck’
* using R version 3.4.1 (2017-06-30)
* using platform: x86_64-apple-darwin15.6.0 (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘Pviz/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘Pviz’ version ‘1.10.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘Pviz’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
.makeParMapping: no visible global function definition for
'assignInNamespace'
drawGD,ProbeTrack: no visible global function definition for
'pushViewport'
drawGD,ProbeTrack: no visible global function definition for 'viewport'
drawGD,ProbeTrack: no visible global function definition for
'popViewport'
drawGD,ProbeTrack: no visible global function definition for 'unit'
drawGD,ProbeTrack: no visible global function definition for 'gpar'
drawGD,ProbeTrack: no visible global function definition for
'convertWidth'
drawGD,ProbeTrack: no visible global function definition for
'stringWidth'
drawGD,ProbeTrack: no visible global function definition for
'stringHeight'
drawGD,ProbeTrack: no visible global function definition for
'grid.text'
drawGD,ProbeTrack: no visible global function definition for
'grid.rect'
drawGD,ProbeTrack: no visible global function definition for
'dataViewport'
drawGD,ProbeTrack : <anonymous>: no visible global function definition
for 'grid.rect'
drawGD,ProbeTrack : <anonymous>: no visible global function definition
for 'gpar'
drawGD,ProbeTrack : <anonymous>: no visible global function definition
for 'grid.text'
drawGD,ProteinAxisTrack: no visible global function definition for
'pushViewport'
drawGD,ProteinAxisTrack: no visible global function definition for
'dataViewport'
drawGD,ProteinAxisTrack: no visible global function definition for
'convertHeight'
drawGD,ProteinAxisTrack: no visible global function definition for
'stringHeight'
drawGD,ProteinAxisTrack: no visible global function definition for
'popViewport'
drawGD,ProteinAxisTrack: no visible global function definition for
'.getGapPos'
drawGD,ProteinAxisTrack: no visible global function definition for
'gaps'
drawGD,ProteinAxisTrack: no visible global function definition for
'viewport'
drawGD,ProteinAxisTrack: no visible global function definition for
'grid.segments'
drawGD,ProteinAxisTrack: no visible global function definition for
'gpar'
drawGD,ProteinAxisTrack: no visible global function definition for
'coord2ext'
drawGD,ProteinAxisTrack: no visible global function definition for
'grid.text'
drawGD,ProteinAxisTrack: no visible global function definition for
'convertWidth'
drawGD,ProteinAxisTrack: no visible global function definition for
'stringWidth'
drawGD,ProteinSequenceTrack: no visible global function definition for
'pushViewport'
drawGD,ProteinSequenceTrack: no visible global function definition for
'dataViewport'
drawGD,ProteinSequenceTrack: no visible global function definition for
'gpar'
drawGD,ProteinSequenceTrack: no visible global function definition for
'popViewport'
drawGD,ProteinSequenceTrack: no visible global function definition for
'convertUnit'
drawGD,ProteinSequenceTrack: no visible global function definition for
'stringWidth'
drawGD,ProteinSequenceTrack: no visible global function definition for
'grid.lines'
drawGD,ProteinSequenceTrack: no visible global function definition for
'unit'
drawGD,ProteinSequenceTrack: no visible global function definition for
'grid.text'
drawGD,ProteinSequenceTrack: no visible global function definition for
'grid.rect'
Undefined global functions or variables:
.getGapPos assignInNamespace convertHeight convertUnit convertWidth
coord2ext dataViewport gaps gpar grid.lines grid.rect grid.segments
grid.text popViewport pushViewport stringHeight stringWidth unit
viewport
Consider adding
importFrom("utils", "assignInNamespace")
to your NAMESPACE file.
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking sizes of PDF files under ‘inst/doc’ ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 1 NOTE
See
‘/Users/biocbuild/bbs-3.5-bioc/meat/Pviz.Rcheck/00check.log’
for details.