BioC 3.5: INSTALL report for HilbertVisGUI on tokay2

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### Running command:
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###   C:\Users\biocbuild\bbs-3.5-bioc\R\bin\R.exe --arch x64 CMD INSTALL --no-multiarch HilbertVisGUI
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* installing to library 'C:/Users/biocbuild/bbs-3.5-bioc/R/library'
* installing *source* package 'HilbertVisGUI' ...

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   WARNING: this package has a configure script
         It probably needs manual configuration
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** libs
C:/Rtools/mingw_64/bin/gcc  -I"C:/Users/biocbuild/bbs-3.5-bioc/R/include" -DNDEBUG -mms-bitfields -IC:/gtkmm64/include/gtkmm-2.4 -IC:/gtkmm64/lib/gtkmm-2.4/include -IC:/gtkmm64/include/atkmm-1.6 -IC:/gtkmm64/include/giomm-2.4 -IC:/gtkmm64/lib/giomm-2.4/include -IC:/gtkmm64/include/pangomm-1.4 -IC:/gtkmm64/lib/pangomm-1.4/include -IC:/gtkmm64/include/gtk-2.0 -IC:/gtkmm64/include/gdkmm-2.4 -IC:/gtkmm64/lib/gdkmm-2.4/include -IC:/gtkmm64/include/atk-1.0 -IC:/gtkmm64/include/glibmm-2.4 -IC:/gtkmm64/lib/glibmm-2.4/include -IC:/gtkmm64/include/glib-2.0 -IC:/gtkmm64/lib/glib-2.0/include -IC:/gtkmm64/include/sigc++-2.0 -IC:/gtkmm64/lib/sigc++-2.0/include -IC:/gtkmm64/include/cairomm-1.0 -IC:/gtkmm64/lib/cairomm-1.0/include -IC:/gtkmm64/include/pango-1.0 -IC:/gtkmm64/include/cairo -IC:/gtkmm64/include -IC:/gtkmm64/include/freetype2 -IC:/gtkmm64/include/libpng14 -IC:/gtkmm64/lib/gtk-2.0/include -IC:/gtkmm64/include/gdk-pixbuf-2.0   -DSO_NAME=HilbertVisGUI -DMSWINDOWS    -I"C:/local323/include"  -mms-bitfields -IC:/gtkmm64/include/gtkmm-2.4 -IC:/gtkmm64/lib/gtkmm-2.4/include -IC:/gtkmm64/include/atkmm-1.6 -IC:/gtkmm64/include/giomm-2.4 -IC:/gtkmm64/lib/giomm-2.4/include -IC:/gtkmm64/include/pangomm-1.4 -IC:/gtkmm64/lib/pangomm-1.4/include -IC:/gtkmm64/include/gtk-2.0 -IC:/gtkmm64/include/gdkmm-2.4 -IC:/gtkmm64/lib/gdkmm-2.4/include -IC:/gtkmm64/include/atk-1.0 -IC:/gtkmm64/include/glibmm-2.4 -IC:/gtkmm64/lib/glibmm-2.4/include -IC:/gtkmm64/include/glib-2.0 -IC:/gtkmm64/lib/glib-2.0/include -IC:/gtkmm64/include/sigc++-2.0 -IC:/gtkmm64/lib/sigc++-2.0/include -IC:/gtkmm64/include/cairomm-1.0 -IC:/gtkmm64/lib/cairomm-1.0/include -IC:/gtkmm64/include/pango-1.0 -IC:/gtkmm64/include/cairo -IC:/gtkmm64/include -IC:/gtkmm64/include/freetype2 -IC:/gtkmm64/include/libpng14 -IC:/gtkmm64/lib/gtk-2.0/include -IC:/gtkmm64/include/gdk-pixbuf-2.0   -DSO_NAME=HilbertVisGUI -DMSWINDOWS   -O2 -Wall  -std=gnu99 -mtune=core2 -c R_env_prot.c -o R_env_prot.o
C:/Rtools/mingw_64/bin/g++  -I"C:/Users/biocbuild/bbs-3.5-bioc/R/include" -DNDEBUG -mms-bitfields -IC:/gtkmm64/include/gtkmm-2.4 -IC:/gtkmm64/lib/gtkmm-2.4/include -IC:/gtkmm64/include/atkmm-1.6 -IC:/gtkmm64/include/giomm-2.4 -IC:/gtkmm64/lib/giomm-2.4/include -IC:/gtkmm64/include/pangomm-1.4 -IC:/gtkmm64/lib/pangomm-1.4/include -IC:/gtkmm64/include/gtk-2.0 -IC:/gtkmm64/include/gdkmm-2.4 -IC:/gtkmm64/lib/gdkmm-2.4/include -IC:/gtkmm64/include/atk-1.0 -IC:/gtkmm64/include/glibmm-2.4 -IC:/gtkmm64/lib/glibmm-2.4/include -IC:/gtkmm64/include/glib-2.0 -IC:/gtkmm64/lib/glib-2.0/include -IC:/gtkmm64/include/sigc++-2.0 -IC:/gtkmm64/lib/sigc++-2.0/include -IC:/gtkmm64/include/cairomm-1.0 -IC:/gtkmm64/lib/cairomm-1.0/include -IC:/gtkmm64/include/pango-1.0 -IC:/gtkmm64/include/cairo -IC:/gtkmm64/include -IC:/gtkmm64/include/freetype2 -IC:/gtkmm64/include/libpng14 -IC:/gtkmm64/lib/gtk-2.0/include -IC:/gtkmm64/include/gdk-pixbuf-2.0   -DSO_NAME=HilbertVisGUI -DMSWINDOWS    -I"C:/local323/include"     -O2 -Wall  -mtune=core2 -c R_interface.cc -o R_interface.o
In file included from C:/Users/biocbuild/bbs-3.5-bioc/R/include/R.h:91:0,
                 from R_interface.cc:17:
C:/Users/biocbuild/bbs-3.5-bioc/R/include/R_ext/RS.h:55:0: warning: "ERROR" redefined
 #define ERROR   ),error(R_problem_buf);}
 ^
In file included from C:/Rtools/mingw_64/x86_64-w64-mingw32/include/windows.h:71:0,
                 from R_interface.cc:13:
C:/Rtools/mingw_64/x86_64-w64-mingw32/include/wingdi.h:75:0: note: this is the location of the previous definition
 #define ERROR 0
 ^
R_interface.cc: In function 'SEXPREC* R_display_hilbert(SEXP)':
R_interface.cc:510:22: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
    for( int i = 0; i < palette_steps->size(); i++ )
                      ^
R_interface.cc:509:11: warning: unused variable 'palette_level' [-Wunused-variable]
    double palette_level = log( REAL( max_palette_valueR )[ 0 ] ) / log( 10. ) * 4;
           ^
R_interface.cc: In member function 'void MainWindowForRForBidir::set_palette_level(double)':
R_interface.cc:702:22: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
    for( int i = 0; i < palette_steps->size(); i++ )
                      ^
R_interface.cc: In member function 'double RDataVector<data_el_t>::get_bin_value(long int, long int) const [with data_el_t = int]':
R_interface.cc:135:9: warning: 'val' may be used uninitialized in this function [-Wmaybe-uninitialized]
         if( INTEGER(data)[i] < val )
         ^
R_interface.cc: In member function 'double RDataVector<data_el_t>::get_bin_value(long int, long int) const [with data_el_t = double]':
R_interface.cc:196:9: warning: 'val' may be used uninitialized in this function [-Wmaybe-uninitialized]
         if( REAL(data)[i] < val )
         ^
C:/Rtools/mingw_64/bin/g++  -I"C:/Users/biocbuild/bbs-3.5-bioc/R/include" -DNDEBUG -mms-bitfields -IC:/gtkmm64/include/gtkmm-2.4 -IC:/gtkmm64/lib/gtkmm-2.4/include -IC:/gtkmm64/include/atkmm-1.6 -IC:/gtkmm64/include/giomm-2.4 -IC:/gtkmm64/lib/giomm-2.4/include -IC:/gtkmm64/include/pangomm-1.4 -IC:/gtkmm64/lib/pangomm-1.4/include -IC:/gtkmm64/include/gtk-2.0 -IC:/gtkmm64/include/gdkmm-2.4 -IC:/gtkmm64/lib/gdkmm-2.4/include -IC:/gtkmm64/include/atk-1.0 -IC:/gtkmm64/include/glibmm-2.4 -IC:/gtkmm64/lib/glibmm-2.4/include -IC:/gtkmm64/include/glib-2.0 -IC:/gtkmm64/lib/glib-2.0/include -IC:/gtkmm64/include/sigc++-2.0 -IC:/gtkmm64/lib/sigc++-2.0/include -IC:/gtkmm64/include/cairomm-1.0 -IC:/gtkmm64/lib/cairomm-1.0/include -IC:/gtkmm64/include/pango-1.0 -IC:/gtkmm64/include/cairo -IC:/gtkmm64/include -IC:/gtkmm64/include/freetype2 -IC:/gtkmm64/include/libpng14 -IC:/gtkmm64/lib/gtk-2.0/include -IC:/gtkmm64/include/gdk-pixbuf-2.0   -DSO_NAME=HilbertVisGUI -DMSWINDOWS    -I"C:/local323/include"     -O2 -Wall  -mtune=core2 -c colorizers.cc -o colorizers.o
C:/Rtools/mingw_64/bin/g++  -I"C:/Users/biocbuild/bbs-3.5-bioc/R/include" -DNDEBUG -mms-bitfields -IC:/gtkmm64/include/gtkmm-2.4 -IC:/gtkmm64/lib/gtkmm-2.4/include -IC:/gtkmm64/include/atkmm-1.6 -IC:/gtkmm64/include/giomm-2.4 -IC:/gtkmm64/lib/giomm-2.4/include -IC:/gtkmm64/include/pangomm-1.4 -IC:/gtkmm64/lib/pangomm-1.4/include -IC:/gtkmm64/include/gtk-2.0 -IC:/gtkmm64/include/gdkmm-2.4 -IC:/gtkmm64/lib/gdkmm-2.4/include -IC:/gtkmm64/include/atk-1.0 -IC:/gtkmm64/include/glibmm-2.4 -IC:/gtkmm64/lib/glibmm-2.4/include -IC:/gtkmm64/include/glib-2.0 -IC:/gtkmm64/lib/glib-2.0/include -IC:/gtkmm64/include/sigc++-2.0 -IC:/gtkmm64/lib/sigc++-2.0/include -IC:/gtkmm64/include/cairomm-1.0 -IC:/gtkmm64/lib/cairomm-1.0/include -IC:/gtkmm64/include/pango-1.0 -IC:/gtkmm64/include/cairo -IC:/gtkmm64/include -IC:/gtkmm64/include/freetype2 -IC:/gtkmm64/include/libpng14 -IC:/gtkmm64/lib/gtk-2.0/include -IC:/gtkmm64/include/gdk-pixbuf-2.0   -DSO_NAME=HilbertVisGUI -DMSWINDOWS    -I"C:/local323/include"     -O2 -Wall  -mtune=core2 -c display.cc -o display.o
C:/Rtools/mingw_64/bin/g++  -I"C:/Users/biocbuild/bbs-3.5-bioc/R/include" -DNDEBUG -mms-bitfields -IC:/gtkmm64/include/gtkmm-2.4 -IC:/gtkmm64/lib/gtkmm-2.4/include -IC:/gtkmm64/include/atkmm-1.6 -IC:/gtkmm64/include/giomm-2.4 -IC:/gtkmm64/lib/giomm-2.4/include -IC:/gtkmm64/include/pangomm-1.4 -IC:/gtkmm64/lib/pangomm-1.4/include -IC:/gtkmm64/include/gtk-2.0 -IC:/gtkmm64/include/gdkmm-2.4 -IC:/gtkmm64/lib/gdkmm-2.4/include -IC:/gtkmm64/include/atk-1.0 -IC:/gtkmm64/include/glibmm-2.4 -IC:/gtkmm64/lib/glibmm-2.4/include -IC:/gtkmm64/include/glib-2.0 -IC:/gtkmm64/lib/glib-2.0/include -IC:/gtkmm64/include/sigc++-2.0 -IC:/gtkmm64/lib/sigc++-2.0/include -IC:/gtkmm64/include/cairomm-1.0 -IC:/gtkmm64/lib/cairomm-1.0/include -IC:/gtkmm64/include/pango-1.0 -IC:/gtkmm64/include/cairo -IC:/gtkmm64/include -IC:/gtkmm64/include/freetype2 -IC:/gtkmm64/include/libpng14 -IC:/gtkmm64/lib/gtk-2.0/include -IC:/gtkmm64/include/gdk-pixbuf-2.0   -DSO_NAME=HilbertVisGUI -DMSWINDOWS    -I"C:/local323/include"     -O2 -Wall  -mtune=core2 -c ruler.cc -o ruler.o
C:/Rtools/mingw_64/bin/g++  -I"C:/Users/biocbuild/bbs-3.5-bioc/R/include" -DNDEBUG -mms-bitfields -IC:/gtkmm64/include/gtkmm-2.4 -IC:/gtkmm64/lib/gtkmm-2.4/include -IC:/gtkmm64/include/atkmm-1.6 -IC:/gtkmm64/include/giomm-2.4 -IC:/gtkmm64/lib/giomm-2.4/include -IC:/gtkmm64/include/pangomm-1.4 -IC:/gtkmm64/lib/pangomm-1.4/include -IC:/gtkmm64/include/gtk-2.0 -IC:/gtkmm64/include/gdkmm-2.4 -IC:/gtkmm64/lib/gdkmm-2.4/include -IC:/gtkmm64/include/atk-1.0 -IC:/gtkmm64/include/glibmm-2.4 -IC:/gtkmm64/lib/glibmm-2.4/include -IC:/gtkmm64/include/glib-2.0 -IC:/gtkmm64/lib/glib-2.0/include -IC:/gtkmm64/include/sigc++-2.0 -IC:/gtkmm64/lib/sigc++-2.0/include -IC:/gtkmm64/include/cairomm-1.0 -IC:/gtkmm64/lib/cairomm-1.0/include -IC:/gtkmm64/include/pango-1.0 -IC:/gtkmm64/include/cairo -IC:/gtkmm64/include -IC:/gtkmm64/include/freetype2 -IC:/gtkmm64/include/libpng14 -IC:/gtkmm64/lib/gtk-2.0/include -IC:/gtkmm64/include/gdk-pixbuf-2.0   -DSO_NAME=HilbertVisGUI -DMSWINDOWS    -I"C:/local323/include"     -O2 -Wall  -mtune=core2 -c window.cc -o window.o
C:/Rtools/mingw_64/bin/g++ -shared -s -static-libgcc -o HilbertVisGUI.dll tmp.def R_env_prot.o R_interface.o colorizers.o display.o ruler.o window.o -LC:/gtkmm64/lib -Lc:/devel/dist/win64/libpng-1.4.3-1/lib -lgtkmm-2.4 -latkmm-1.6 -lgdkmm-2.4 -lgiomm-2.4 -lpangomm-1.4 -lgtk-win32-2.0 -lglibmm-2.4 -lcairomm-1.0 -lsigc-2.0 -lgdk-win32-2.0 -latk-1.0 -lgio-2.0 -lpangowin32-1.0 -lgdi32 -lpangocairo-1.0 -lgdk_pixbuf-2.0 -lpng14 -lpango-1.0 -lcairo -lgobject-2.0 -lgmodule-2.0 -lgthread-2.0 -lglib-2.0 -lintl -LC:/local323/lib/x64 -LC:/local323/lib -LC:/Users/biocbuild/bbs-3.5-bioc/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.5-bioc/R/library/HilbertVisGUI/libs/x64
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (HilbertVisGUI)
BioC 3.5: INSTALL report for HilbertVisGUI on tokay2

Summary

Command output
