GOSemSim 2.2.0
Guangchuang Yu
| Snapshot Date: 2017-08-15 17:17:57 -0400 (Tue, 15 Aug 2017) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_3_5/madman/Rpacks/GOSemSim | | Last Changed Rev: 129126 / Revision: 131943 | | Last Changed Date: 2017-04-24 15:25:24 -0400 (Mon, 24 Apr 2017) |
| malbec2 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | OK | OK | OK | |  |
| tokay2 | Windows Server 2012 R2 Standard / x64 | [ OK ] | OK | OK | OK | |
| veracruz2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | |
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### Running command:
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### rm -rf GOSemSim.buildbin-libdir && mkdir GOSemSim.buildbin-libdir && C:\cygwin\bin\curl.exe -O http://172.29.0.4/BBS/3.5/bioc/src/contrib/GOSemSim_2.2.0.tar.gz && C:\Users\biocbuild\bbs-3.5-bioc\R\bin\R.exe CMD INSTALL --build --library=GOSemSim.buildbin-libdir --merge-multiarch GOSemSim_2.2.0.tar.gz && C:\Users\biocbuild\bbs-3.5-bioc\R\bin\R.exe CMD INSTALL GOSemSim_2.2.0.zip && rm GOSemSim_2.2.0.tar.gz GOSemSim_2.2.0.zip
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install for i386
* installing *source* package 'GOSemSim' ...
** libs
C:/Rtools/mingw_32/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.5-bioc/R/library/Rcpp/include" -I"C:/local323/include" -O2 -Wall -mtune=core2 -c ICmethod.cpp -o ICmethod.o
ICmethod.cpp: In function 'Rcpp::NumericMatrix infoContentMethod_cpp(Rcpp::StringVector&, Rcpp::StringVector&, Rcpp::List&, Rcpp::NumericVector&, const string&, const string&)':
ICmethod.cpp:82:29: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (std::size_t i=0; i < ic_.size(); i++ ) {
^
ICmethod.cpp:88:29: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (std::size_t i=0; i < ic_.size(); i++ ) {
^
ICmethod.cpp:107:29: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (std::size_t i=0; i < anc_.size(); i++ ) {
^
ICmethod.cpp:118:30: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for ( std::size_t i = 0; i < id1_.size(); i++ ) {
^
ICmethod.cpp:125:34: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for ( std::size_t j = 0; j < id2_.size(); j++ ) {
^
ICmethod.cpp:152:34: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for ( std::size_t j = 0; j < id2_.size(); j++ ) {
^
C:/Rtools/mingw_32/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.5-bioc/R/library/Rcpp/include" -I"C:/local323/include" -O2 -Wall -mtune=core2 -c RcppExports.cpp -o RcppExports.o
C:/Rtools/mingw_32/bin/g++ -shared -s -static-libgcc -o GOSemSim.dll tmp.def ICmethod.o RcppExports.o -LC:/local323/lib/i386 -LC:/local323/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.5-bioc/meat/GOSemSim.buildbin-libdir/GOSemSim/libs/i386
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
install for x64
* installing *source* package 'GOSemSim' ...
** libs
C:/Rtools/mingw_64/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.5-bioc/R/library/Rcpp/include" -I"C:/local323/include" -O2 -Wall -mtune=core2 -c ICmethod.cpp -o ICmethod.o
ICmethod.cpp: In function 'Rcpp::NumericMatrix infoContentMethod_cpp(Rcpp::StringVector&, Rcpp::StringVector&, Rcpp::List&, Rcpp::NumericVector&, const string&, const string&)':
ICmethod.cpp:82:29: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (std::size_t i=0; i < ic_.size(); i++ ) {
^
ICmethod.cpp:88:29: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (std::size_t i=0; i < ic_.size(); i++ ) {
^
ICmethod.cpp:107:29: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for (std::size_t i=0; i < anc_.size(); i++ ) {
^
ICmethod.cpp:118:30: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for ( std::size_t i = 0; i < id1_.size(); i++ ) {
^
ICmethod.cpp:125:34: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for ( std::size_t j = 0; j < id2_.size(); j++ ) {
^
ICmethod.cpp:152:34: warning: comparison between signed and unsigned integer expressions [-Wsign-compare]
for ( std::size_t j = 0; j < id2_.size(); j++ ) {
^
C:/Rtools/mingw_64/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.5-bioc/R/library/Rcpp/include" -I"C:/local323/include" -O2 -Wall -mtune=core2 -c RcppExports.cpp -o RcppExports.o
C:/Rtools/mingw_64/bin/g++ -shared -s -static-libgcc -o GOSemSim.dll tmp.def ICmethod.o RcppExports.o -LC:/local323/lib/x64 -LC:/local323/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.5-B/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.5-bioc/meat/GOSemSim.buildbin-libdir/GOSemSim/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'GOSemSim' as GOSemSim_2.2.0.zip
* DONE (GOSemSim)
* installing to library 'C:/Users/biocbuild/bbs-3.5-bioc/R/library'
package 'GOSemSim' successfully unpacked and MD5 sums checked