BioC 3.5: BUILD report for AtlasRDF on tokay2

Package: AtlasRDF

Version: 1.12.0

Command: chmod a+r AtlasRDF -R && C:\Users\biocbuild\bbs-3.5-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data AtlasRDF

StartedAt: 2017-08-15 20:03:27 -0400 (Tue, 15 Aug 2017)

EndedAt: 2017-08-15 20:06:05 -0400 (Tue, 15 Aug 2017)

EllapsedTime: 158.4 seconds

RetCode: 1

Status:  ERROR

PackageFile: None

PackageFileSize: NA

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### Running command:
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###   chmod a+r AtlasRDF -R && C:\Users\biocbuild\bbs-3.5-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data AtlasRDF
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* checking for file 'AtlasRDF/DESCRIPTION' ... OK
* preparing 'AtlasRDF':
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ...Warning: running command '"C:/Users/biocbuild/bbs-3.5-bioc/R/bin/x64/Rscript" --vanilla --default-packages= -e "tools::buildVignettes(dir = '.', tangle = TRUE)"' had status 1
 ERROR
Loading required package: hash
hash-2.2.6 provided by Decision Patterns

Loading required package: SPARQL
Loading required package: XML
Loading required package: RCurl
Loading required package: bitops
An error occured when trying SPARQL query for includeOnlySubclasses function Error: XML content does not seem to be XML: 'virtuoso.jdbc4.VirtuosoException: Virtuoso Communications Link Failure (timeout) : Connection reset'

Error in retrieving subclasses of class efo:EFO_0000408

Error: processing vignette 'AtlasRDF_vignette.Rnw' failed with diagnostics:
 chunk 13 
Error : trying to get slot "p.value" from an object of a basic class ("NULL") with no slots
Execution halted