Back to the "Multiple platform build/check report"

BioC experimental data: CHECK report for QDNAseq.mm10 on moscato1

This page was generated on 2016-05-28 20:31:26 -0700 (Sat, 28 May 2016).

Package 221/292HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
QDNAseq.mm10 1.3.0
Daoud Sie
Snapshot Date: 2016-05-28 09:20:19 -0700 (Sat, 28 May 2016)
URL: https://hedgehog.fhcrc.org/bioc-data/trunk/experiment/pkgs/QDNAseq.mm10
Last Changed Rev: 3763 / Revision: 3781
Last Changed Date: 2016-05-03 14:48:02 -0700 (Tue, 03 May 2016)
zin1 Linux (Ubuntu 16.04 LTS) / x86_64  NotNeeded  OK  OK UNNEEDED, same version exists in internal repository
moscato1 Windows Server 2008 R2 Standard (64-bit) / x64  NotNeeded  OK [ OK ] OK 

Summary

Package: QDNAseq.mm10
Version: 1.3.0
Command: rm -rf QDNAseq.mm10.buildbin-libdir QDNAseq.mm10.Rcheck && mkdir QDNAseq.mm10.buildbin-libdir QDNAseq.mm10.Rcheck && D:\biocbld\bbs-3.4-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=QDNAseq.mm10.buildbin-libdir QDNAseq.mm10_1.3.0.tar.gz >QDNAseq.mm10.Rcheck\00install.out 2>&1 && cp QDNAseq.mm10.Rcheck\00install.out QDNAseq.mm10-install.out && D:\biocbld\bbs-3.4-bioc\R\bin\R.exe CMD check --library=QDNAseq.mm10.buildbin-libdir --install="check:QDNAseq.mm10-install.out" --force-multiarch --no-vignettes --timings QDNAseq.mm10_1.3.0.tar.gz
StartedAt: 2016-05-28 16:03:22 -0700 (Sat, 28 May 2016)
EndedAt: 2016-05-28 16:07:52 -0700 (Sat, 28 May 2016)
EllapsedTime: 270.1 seconds
RetCode: 0
Status:  OK  
CheckDir: QDNAseq.mm10.Rcheck
Warnings: 0

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf QDNAseq.mm10.buildbin-libdir QDNAseq.mm10.Rcheck && mkdir QDNAseq.mm10.buildbin-libdir QDNAseq.mm10.Rcheck && D:\biocbld\bbs-3.4-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=QDNAseq.mm10.buildbin-libdir QDNAseq.mm10_1.3.0.tar.gz >QDNAseq.mm10.Rcheck\00install.out 2>&1 && cp QDNAseq.mm10.Rcheck\00install.out QDNAseq.mm10-install.out  && D:\biocbld\bbs-3.4-bioc\R\bin\R.exe CMD check --library=QDNAseq.mm10.buildbin-libdir --install="check:QDNAseq.mm10-install.out" --force-multiarch --no-vignettes --timings QDNAseq.mm10_1.3.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory 'D:/biocbld/bbs-3.4-data-experiment/meat/QDNAseq.mm10.Rcheck'
* using R version 3.3.0 (2016-05-03)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'QDNAseq.mm10/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'QDNAseq.mm10' version '1.3.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'QDNAseq.mm10' can be installed ... OK
* checking installed package size ... NOTE
  installed size is 31.3Mb
  sub-directories of 1Mb or more:
    data  31.2Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
Examples with CPU or elapsed time > 5s
                user system elapsed
mm10.1kbp.SR50 19.88   0.37   20.25
** running examples for arch 'x64' ... OK
Examples with CPU or elapsed time > 5s
                user system elapsed
mm10.1kbp.SR50 20.31   0.32   22.18
* checking PDF version of manual ... OK
* DONE

Status: 1 NOTE
See
  'D:/biocbld/bbs-3.4-data-experiment/meat/QDNAseq.mm10.Rcheck/00check.log'
for details.


QDNAseq.mm10.Rcheck/00install.out:


install for i386

* installing *source* package 'QDNAseq.mm10' ...
** R
** data
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded

install for x64

* installing *source* package 'QDNAseq.mm10' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'QDNAseq.mm10' as QDNAseq.mm10_1.3.0.zip
* DONE (QDNAseq.mm10)

QDNAseq.mm10.Rcheck/examples_i386/QDNAseq.mm10-Ex.timings:

nameusersystemelapsed
QDNAseq.mm10-package0.860.130.98
mm10.1000kbp.SR500.050.060.11
mm10.100kbp.SR500.350.030.39
mm10.10kbp.SR502.470.062.54
mm10.15kbp.SR501.340.051.39
mm10.1kbp.SR5019.88 0.3720.25
mm10.30kbp.SR500.670.080.75
mm10.500kbp.SR500.070.060.14
mm10.50kbp.SR500.390.070.45
mm10.5kbp.SR504.230.154.39

QDNAseq.mm10.Rcheck/examples_x64/QDNAseq.mm10-Ex.timings:

nameusersystemelapsed
QDNAseq.mm10-package0.950.051.00
mm10.1000kbp.SR500.060.030.09
mm10.100kbp.SR500.210.040.27
mm10.10kbp.SR502.490.052.54
mm10.15kbp.SR501.280.061.35
mm10.1kbp.SR5020.31 0.3222.18
mm10.30kbp.SR500.510.040.56
mm10.500kbp.SR500.050.080.12
mm10.50kbp.SR500.310.060.38
mm10.5kbp.SR504.510.194.69